RLG00000004201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003967
Physical Location & Seq
Forward (+)
57174339 .. 57176956
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004201

Sequence Viewer

Length: 801 bp
ATGGCGGATCTTGAAGAAGGCTATGAGATGGTTAATTGGCCTCAGATGAGTGATTTTGAGGATGAAGTTGAAATAAATGATTTTGTTGAGCTCACTCAGGATGAGTTGGACCGTGCCACAACAGAGAAGATTGATTCTGGTAATGAAAACTCTGAAGCCGTGAAAACTTTAGTGGAAGAGTTTGATTCTAAGGGAGGACTTCATGATGGTGTCAAGCATGATTGTTTTCCATCTGCCTCCACAGATGGAAGGGCTTCAGTGGAACCTAAAGTATCTGAGAAGGGGCTTCTTGATGCTATTCAGCAGGATTACTTCCCATCTGCCTCCATAGAGAGTTTTGAATTACCTCTTTCAGAATCAAAAAGGGTTGGGTCTGAAGGAAAGCCACTAGTCATCATTGATGATTATCTCCTTAAGATTTTTGATTCTGGTAAAGCTGATGTTAAGATTTTTCAAGAGTTTCCGGTCCTTGAGAAGATGGATTCTGGAAATAAAGAGCCTCAAAAGAAAACTTCACTGGAAGAGTTTGATTCTGAGAAATCTGATTTCAGTGTGGCTGGAGTGAAGATTGCTGCAGGACAGACACCAGTCGTCATTGAGGATAATGGCTGGAAGAGTTTTGAATTACCTCTTTCAGAATCAAAAAGGGCCGAGTCTGAGGGAAAGCCACTAGTCATCATTGATGATTATATAGGCTGCAGTAAGTATTTTGATTCTGGTGAAGTTGATGTTAATATCTTTCAAGAGTTTCCACTCCTTGAGGCATTACAGCATCTCCCGAATTTCTTTAGGTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.79

Weight (kDa)

4.28

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 3 cut(s) 174, 240, 396
AflII CTTAAG 1 cut(s) 413
AgsI TTSAA 6 cut(s) 14, 71, 341, 455, 623, 743
AhlI ACTAGT 2 cut(s) 388, 670
AluBI AGCT 2 cut(s) 91, 437
AluI AGCT 2 cut(s) 91, 437
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 15
AoxI GGCC 2 cut(s) 38, 648
ApeKI GCWGC 2 cut(s) 572, 696
ApoI RAATTY 1 cut(s) 781
Asp700I GAANNNNTTC 1 cut(s) 253
AspS9I GGNCC 3 cut(s) 109, 466, 648
AsuHPI GGTGA 1 cut(s) 731
AvaII GGWCC 2 cut(s) 109, 466
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 559, 683
BccI CCATC 6 cut(s) 22, 200, 238, 239, 325, 472
BceAI ACGGC 1 cut(s) 143
BcuI ACTAGT 2 cut(s) 388, 670
BfaI CTAG 2 cut(s) 389, 671
BfmI CTRYAG 2 cut(s) 573, 697
BfrI CTTAAG 1 cut(s) 413
BisI GCNGC 2 cut(s) 573, 697
BlsI GCNGC 2 cut(s) 574, 698
Bme18I GGWCC 2 cut(s) 109, 466
BmgT120I GGNCC 3 cut(s) 109, 466, 648
BmiI GGNNCC 1 cut(s) 264
BmsI GCATC 2 cut(s) 283, 781
BoxI GACNNNNGTC 1 cut(s) 587
BpmI CTGGAG 1 cut(s) 579
BpuEI CTTGAG 2 cut(s) 491, 779
BsaBI GATNNNNATC 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bse1I ACTGG 2 cut(s) 522, 587
Bse8I GATNNNNATC 1 cut(s) 405
BseGI GGATG 2 cut(s) 67, 106
BseJI GATNNNNATC 1 cut(s) 405
BseMII CTCAG 5 cut(s) 56, 110, 267, 525, 648
BseNI ACTGG 2 cut(s) 522, 587
BseXI GCAGC 2 cut(s) 559, 683
BshFI GGCC 2 cut(s) 40, 650
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 464
BsnI GGCC 2 cut(s) 40, 650
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 40, 650
BspCNI CTCAG 5 cut(s) 55, 109, 268, 526, 649
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 2 cut(s) 577, 701
BspPI GGATC 1 cut(s) 15
BspTI CTTAAG 1 cut(s) 413
BsrI ACTGG 2 cut(s) 522, 587
BssMI GATC 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 3 cut(s) 171, 516, 608
BstAFI CTTAAG 1 cut(s) 413
BstDEI CTNAG 6 cut(s) 42, 96, 189, 276, 534, 657
BstF5I GGATG 2 cut(s) 67, 106
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstPAI GACNNNNGTC 1 cut(s) 587
BstSFI CTRYAG 2 cut(s) 573, 697
BstV1I GCAGC 2 cut(s) 559, 683
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 2 cut(s) 40, 650
BtsCI GGATG 2 cut(s) 67, 106
BtsIMutI CAGTG 3 cut(s) 264, 515, 556
CciI TCATGA 1 cut(s) 202
Cfr13I GGNCC 3 cut(s) 109, 466, 648
CviAII CATG 2 cut(s) 203, 218
DdeI CTNAG 6 cut(s) 42, 96, 189, 276, 534, 657
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 3 cut(s) 171, 516, 608
EarI CTCTTC 3 cut(s) 171, 516, 608
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 109, 466
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 3 cut(s) 174, 240, 396
EcoICRI GAGCTC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 93
FaeI CATG 2 cut(s) 206, 221
FaiI YATR 6 cut(s) 24, 204, 219, 329, 690, 692
FatI CATG 2 cut(s) 202, 217
Fnu4HI GCNGC 2 cut(s) 573, 697
FokI GGATG 2 cut(s) 74, 113
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 2 cut(s) 573, 697
FspBI CTAG 2 cut(s) 389, 671
GluI GCNGC 2 cut(s) 573, 697
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 2 cut(s) 40, 650
HapII CCGG 1 cut(s) 464
Hin1II CATG 2 cut(s) 206, 221
HinfI GANTC 9 cut(s) 134, 185, 356, 425, 482, 530, 638, 653, 713
HpaII CCGG 1 cut(s) 464
HphI GGTGA 1 cut(s) 731
Hpy188III TCNNGA 8 cut(s) 11, 98, 203, 290, 455, 486, 743, 778
HpyAV CCTTC 4 cut(s) 11, 243, 274, 371
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 575, 699
HpyF3I CTNAG 6 cut(s) 42, 96, 189, 276, 534, 657
Hsp92II CATG 2 cut(s) 206, 221
Kzo9I GATC 1 cut(s) 7
Lsp1109I GCAGC 2 cut(s) 559, 683
LweI GCATC 2 cut(s) 283, 781
MaeI CTAG 2 cut(s) 389, 671
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 7 cut(s) 26, 139, 188, 487, 533, 577, 625
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 4 cut(s) 34, 341, 623, 781
MlyI GAGTC 1 cut(s) 662
MmeI TCCRAC 1 cut(s) 87
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 4 cut(s) 33, 414, 444, 732
MslI CAYNNNNRTG 1 cut(s) 207
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 1 cut(s) 464
NdeII GATC 1 cut(s) 7
NlaIII CATG 2 cut(s) 206, 221
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 676
PagI TCATGA 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 8 cut(s) 134, 185, 356, 425, 482, 530, 638, 713
PkrI GCNGC 2 cut(s) 574, 698
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
PshAI GACNNNNGTC 1 cut(s) 587
Psp124BI GAGCTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 3 cut(s) 109, 466, 648
PstI CTGCAG 2 cut(s) 577, 701
PsuI RGATCY 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 207
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 4 cut(s) 33, 414, 444, 732
SatI GCNGC 2 cut(s) 573, 697
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 3 cut(s) 109, 466, 648
SchI GAGTC 1 cut(s) 662
SduI GDGCHC 1 cut(s) 93
SetI ASST 6 cut(s) 93, 268, 349, 439, 631, 794
SfaNI GCATC 2 cut(s) 283, 781
SfcI CTRYAG 2 cut(s) 573, 697
SinI GGWCC 2 cut(s) 109, 466
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 3 cut(s) 413, 470, 758
SmoI CTYRAG 3 cut(s) 413, 470, 758
SpeI ACTAGT 2 cut(s) 388, 670
Sse9I AATT 4 cut(s) 34, 341, 623, 781
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 389, 671
SstI GAGCTC 1 cut(s) 93
TaaI ACNGT 1 cut(s) 113
TasI AATT 4 cut(s) 34, 341, 623, 781
TfiI GAWTC 8 cut(s) 134, 185, 356, 425, 482, 530, 638, 713
Tru1I TTAA 4 cut(s) 33, 414, 444, 732
Tru9I TTAA 4 cut(s) 33, 414, 444, 732
TscAI CASTG 3 cut(s) 264, 522, 556
TseI GCWGC 2 cut(s) 572, 696
TspDTI ATGAA 3 cut(s) 78, 159, 191
TspRI CASTG 3 cut(s) 264, 522, 556
Vha464I CTTAAG 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 109, 466
XapI RAATTY 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 2 cut(s) 389, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.