Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Forward (+)

3616486 .. 3617881

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTTCATGCTTCCTCATTACATGGTCCTGATGTGGATATGTTAATTGAGATTTTAAATGCCATCTCAAATATTGGACACAGGGTTGATGCTTCTCTCACGTCAACTGTAGTTTTGTCTTCTTCTACTCATGTCCCCATAGAAGCTGATGGAGAAGAGAGGAATATAGTCATGACAGATTATAGGGAGTCATCCAAAATGGATAGTTTGGAGCAGGGGATTGAACCATCTTCTGATTCTTTAGTAGGATATGCTGAACTATTACTTCCTAGTTGTGTGAGCAAGGTTGCAAGTCTTCTTGAAACTGTACTTCAGAATGGTGTTGTCCTGCAGTTGTTTACCTTGCCTTTATTGTCTCTTTCTATTACTGTTAGTCCGAGTATACCTATTGCATTTAAGAACTTCACACCACAACATTCTGCTTCTTTGGCTTTGGTAGTATTCTACACTGACTACCAATCTCGATCACATTTATTGCAGTGGTTCGCTCTTTGCTTTGAACTTTGTAATTTTGAGACAACAAAGGAGCCACCACTCTCTTGCAGACTAATCCAAACCTTAGTCTCGAGGGTATTCACTACCATCATTTCTGGTCCTCAATATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

202

Amino Acids

22.24

Weight (kDa)

4.87

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	224, 302, 500
AjiI	CACGTC	1 cut(s)	102
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	3 cut(s)	360, 509, 568
Ama87I	CYCGRG	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	26, 593
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	2 cut(s)	26, 593
BbsI	GAAGAC	2 cut(s)	111, 287
BccI	CCATC	4 cut(s)	71, 143, 235, 590
BcoDI	GTCTC	3 cut(s)	360, 509, 568
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	108, 329
Bme18I	GGWCC	2 cut(s)	26, 593
BmeT110I	CYCGRG	1 cut(s)	565
BmgBI	CACGTC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	26, 593
BmiI	GGNNCC	1 cut(s)	528
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	111, 287
BseGI	GGATG	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	565
BslFI	GGGAC	1 cut(s)	119
BsmAI	GTCTC	3 cut(s)	360, 509, 568
BsmFI	GGGAC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	565
Bsp143I	GATC	1 cut(s)	464
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	528
BspMAI	CTGCAG	1 cut(s)	333
BssMI	GATC	1 cut(s)	464
BssNAI	GTATAC	1 cut(s)	383
Bst1107I	GTATAC	1 cut(s)	383
Bst4CI	ACNGT	3 cut(s)	109, 307, 370
Bst6I	CTCTTC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	559
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	1 cut(s)	467
BstMAI	GTCTC	3 cut(s)	360, 509, 568
BstMBI	GATC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstSFI	CTRYAG	2 cut(s)	108, 329
BstV2I	GAAGAC	2 cut(s)	111, 287
BstZ17I	GTATAC	1 cut(s)	383
BtrI	CACGTC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	2 cut(s)	447, 485
CciI	TCATGA	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	26, 593
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	4 cut(s)	8, 23, 131, 172
CviJI	RGCY	3 cut(s)	146, 431, 529
CviKI_1	RGCY	3 cut(s)	146, 431, 529
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	1 cut(s)	559
DpnI	GATC	1 cut(s)	466
DpnII	GATC	1 cut(s)	464
DraI	TTTAAA	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	26, 593
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	565
FaeI	CATG	4 cut(s)	11, 26, 134, 175
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	4 cut(s)	7, 22, 130, 171
FblI	GTMKAC	1 cut(s)	382
FokI	GGATG	1 cut(s)	178
FspBI	CTAG	1 cut(s)	270
Hin1II	CATG	4 cut(s)	11, 26, 134, 175
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	188, 236
Hpy166II	GTNNAC	3 cut(s)	105, 339, 383
Hpy188I	TCNGA	3 cut(s)	235, 315, 378
Hpy188III	TCNNGA	5 cut(s)	29, 172, 299, 462, 565
Hpy8I	GTNNAC	3 cut(s)	105, 339, 383
HpyCH4III	ACNGT	3 cut(s)	109, 307, 370
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	5 cut(s)	290, 331, 392, 478, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	1 cut(s)	559
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	4 cut(s)	11, 26, 134, 175
Kzo9I	GATC	1 cut(s)	464
LmnI	GCTCC	2 cut(s)	211, 526
LpnPI	CCDG	5 cut(s)	42, 67, 200, 341, 576
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	101
MalI	GATC	1 cut(s)	466
MboI	GATC	1 cut(s)	464
MboII	GAAGA	5 cut(s)	111, 114, 167, 222, 287
MluCI	AATT	2 cut(s)	45, 508
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	25, 153, 561, 606
MseI	TTAA	3 cut(s)	44, 56, 396
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	1 cut(s)	464
NlaIII	CATG	4 cut(s)	11, 26, 134, 175
NlaIV	GGNNCC	1 cut(s)	528
PaeR7I	CTCGAG	1 cut(s)	565
PagI	TCATGA	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	236
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	528
PspPI	GGNCC	2 cut(s)	26, 593
PstI	CTGCAG	1 cut(s)	333
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	44, 56, 396
Sau3AI	GATC	1 cut(s)	464
Sau96I	GGNCC	2 cut(s)	26, 593
SchI	GAGTC	1 cut(s)	197
SetI	ASST	6 cut(s)	104, 148, 288, 344, 388, 560
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	2 cut(s)	108, 329
Sfr274I	CTCGAG	1 cut(s)	565
SinI	GGWCC	2 cut(s)	26, 593
SlaI	CTCGAG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	2 cut(s)	45, 508
SspI	AATATT	2 cut(s)	73, 602
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	109, 307, 370
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	463, 566
TasI	AATT	2 cut(s)	45, 508
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	3 cut(s)	44, 56, 396
Tru9I	TTAA	3 cut(s)	44, 56, 396
TscAI	CASTG	2 cut(s)	454, 485
TspRI	CASTG	2 cut(s)	454, 485
VpaK11BI	GGWCC	2 cut(s)	26, 593
XhoI	CTCGAG	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.