Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Reverse (-)

32572427 .. 32576451

Gene Structure 4025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG185400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGTGCTGGTACAGGAAATAAGGAGTATGAGATTCAAAGTGCTGAAGGGGCTGTTGTTACAGTAAAATCGATTGGGAAGCTGCGAGATGGTAAGAAATTTTTGAAGAAAGGTCATGGTGAAGGAGAAGCACCATTTGATTTCAAGAAAAACGAGGAGCAAGTGATTGACGAGCTTGAGAAAACTGTAGTGACAATGAGGAAGGTTTTAGATGAAGCAAGTCTTCCTTCTAACTTCATGGATGCTATAATGGATGGTGTCCTTTGCTCAATAGAGGCCATTACTTGCATCCCACAATGTCTGTATGCCCTGTGTTTAAATAATAATGGTTTTCAGGCTGTGAAAGATGCTTTGAGGTGCTTGGTTGAGGTATTTAATTCAAGAAAATATTTGCGTGCTCTAACAAATGATAAACTGGGTGAATTAATGTTTCATGCTTCCTCATTACATGGTCCTGATGTGGATATGTTAATTGAGATTTTAAATGCCATCTCAAATATTGGACACAGGGTTGATGCTTCTCTCACGTCAACTGCAGTTTTGTCTTCTTCTACTCATGTCCCCATAGAAGCTGATGGAGAAGAGAGGAATATAGTCATGACAGATTATAGGGAGTCATCCAAAATGGATAGTTTGGAGCAGGGGATTGAACCATCTTCTGATTCTTTAGTAGGATATGCTGAACTATTACTTCCTGGTTGTGTGAGCAAGGTTGCAAGTCTTCTTGAAACTGGTGGAGAAATAGAAGAGGTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

252

Amino Acids

27.33

Weight (kDa)

4.73

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF913	PF06025	66 - 196	6e-22	Domain of Unknown Function (DUF913)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	6 cut(s)	38, 106, 145, 381, 650, 728
AjiI	CACGTC	1 cut(s)	528
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	3 cut(s)	82, 175, 572
AluI	AGCT	3 cut(s)	82, 175, 572
Alw21I	GWGCWC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	98
AseI	ATTAAT	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	131, 431
AvaII	GGWCC	1 cut(s)	452
BbsI	GAAGAC	3 cut(s)	215, 537, 713
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	5 cut(s)	83, 248, 497, 569, 661
BciT130I	CCWGG	1 cut(s)	696
BfmI	CTRYAG	2 cut(s)	186, 534
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
Bme1390I	CCNGG	1 cut(s)	696
Bme18I	GGWCC	1 cut(s)	452
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	696
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	4 cut(s)	232, 297, 337, 505
BmuI	ACTGGG	1 cut(s)	425
BpiI	GAAGAC	3 cut(s)	215, 537, 713
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	420, 736
BseBI	CCWGG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	71
BseGI	GGATG	4 cut(s)	247, 259, 288, 617
BseNI	ACTGG	2 cut(s)	420, 736
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	400
BspANI	GGCC	1 cut(s)	278
BspDI	ATCGAT	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	420, 736
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	64, 187
Bst6I	CTCTTC	2 cut(s)	576, 741
BstC8I	GCNNGC	1 cut(s)	396
BstF5I	GGATG	4 cut(s)	247, 259, 288, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	694
BstSFI	CTRYAG	2 cut(s)	186, 534
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	3 cut(s)	215, 537, 713
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	278
BsuTUI	ATCGAT	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	528
BtsCI	GGATG	4 cut(s)	247, 259, 288, 617
Cac8I	GCNNGC	1 cut(s)	396
CciI	TCATGA	1 cut(s)	597
Cfr13I	GGNCC	1 cut(s)	452
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	6 cut(s)	116, 238, 434, 449, 557, 598
CviJI	RGCY	6 cut(s)	53, 82, 175, 278, 338, 572
CviKI_1	RGCY	6 cut(s)	53, 82, 175, 278, 338, 572
CviQI	GTAC	1 cut(s)	12
DraI	TTTAAA	2 cut(s)	318, 483
Eam1104I	CTCTTC	2 cut(s)	576, 741
EarI	CTCTTC	2 cut(s)	576, 741
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	694
FaeI	CATG	6 cut(s)	119, 241, 437, 452, 560, 601
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 211, 243
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	6 cut(s)	115, 237, 433, 448, 556, 597
Fnu4HI	GCNGC	1 cut(s)	83
FokI	GGATG	4 cut(s)	254, 266, 275, 604
Fsp4HI	GCNGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	6 cut(s)	119, 241, 437, 452, 560, 601
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	3 cut(s)	34, 614, 662
HphI	GGTGA	2 cut(s)	131, 431
Hpy166II	GTNNAC	1 cut(s)	531
Hpy188I	TCNGA	1 cut(s)	661
Hpy188III	TCNNGA	5 cut(s)	145, 381, 455, 598, 725
Hpy8I	GTNNAC	1 cut(s)	531
HpyAV	CCTTC	4 cut(s)	41, 116, 196, 237
HpyCH4III	ACNGT	2 cut(s)	64, 187
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	3 cut(s)	288, 536, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	6 cut(s)	119, 241, 437, 452, 560, 601
LmnI	GCTCC	2 cut(s)	157, 637
LpnPI	CCDG	9 cut(s)	320, 323, 401, 468, 493, 626, 681, 708, 717
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	4 cut(s)	232, 297, 337, 505
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	2 cut(s)	58, 190
MboII	GAAGA	8 cut(s)	118, 215, 537, 540, 593, 648, 713, 758
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	4 cut(s)	98, 376, 422, 471
MlyI	GAGTC	1 cut(s)	623
MnlI	CCTC	8 cut(s)	148, 192, 268, 348, 361, 451, 579, 742
MseI	TTAA	5 cut(s)	317, 375, 425, 470, 482
MspR9I	CCNGG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	6 cut(s)	119, 241, 437, 452, 560, 601
NmuCI	GTSAC	1 cut(s)	190
PagI	TCATGA	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	34, 662
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
PshBI	ATTAAT	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspPI	GGNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	538
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	317, 375, 425, 470, 482
SatI	GCNGC	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	4 cut(s)	232, 297, 337, 505
SfcI	CTRYAG	2 cut(s)	186, 534
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	4 cut(s)	98, 376, 422, 471
SspI	AATATT	2 cut(s)	389, 499
StyD4I	CCNGG	1 cut(s)	694
TaaI	ACNGT	2 cut(s)	64, 187
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	71
TasI	AATT	4 cut(s)	98, 376, 422, 471
TfiI	GAWTC	2 cut(s)	34, 662
Tru1I	TTAA	5 cut(s)	317, 375, 425, 470, 482
Tru9I	TTAA	5 cut(s)	317, 375, 425, 470, 482
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	226, 228, 422
VpaK11BI	GGWCC	1 cut(s)	452
VspI	ATTAAT	1 cut(s)	425
XapI	RAATTY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.