Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Forward (+)

13373235 .. 13375165

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG146200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCATCAGAGGCGTCGATTTCAAGTGGTCAAAGGTGGACTTTGGCAATGGTGTGCCTGAGAAAACTTCAGTGGAACCTAAAGTATCTGAGGAAGGGCTTCTTGATGCTATTCAGCAGGATTACTTCCCATCTGCTTCCATAGAGAGTTTTGAATTACCTGTTTCCGAATCAAAAAGGGTTAGGTCTGAAGGAAAGCTACTAGTCATCATTGATGATTATATAGGCTGCAGTAAGTATTTTGATTCTGGTAAAGTTGATGTTAAGATTTTTCAAGAGTTTCAGGTCCTTGAGATGATGGAATCTGGAAATAAAGAGTCTCAAAAGAAAAATTCACTGGAAGAGTTTGATTCTGAGGTAGGAGTTGATGCTGTAAAGCATGACCATTTTCCATGTGCCTCAACAAGGGTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

4.73

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	2 cut(s)	54, 210
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	25, 155, 275
AhlI	ACTAGT	1 cut(s)	202
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	331
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	3 cut(s)	14, 139, 292
BcoDI	GTCTC	1 cut(s)	324
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	229
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	2 cut(s)	97, 358
BpuEI	CTTGAG	1 cut(s)	311
BsaHI	GRCGYC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	51, 81, 345
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	52, 82, 346
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	60, 90, 354
BstENI	CCTNNNNNAGG	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	78, 335
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	2 cut(s)	380, 393
CviJI	RGCY	4 cut(s)	5, 100, 199, 228
CviKI_1	RGCY	4 cut(s)	5, 100, 199, 228
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	3 cut(s)	60, 90, 354
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	54, 210
EcoNI	CCTNNNNNAGG	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	286
FaeI	CATG	2 cut(s)	383, 396
FaiI	YATR	5 cut(s)	143, 222, 224, 381, 394
FalI	AAGNNNNNCTT	4 cut(s)	26, 58, 87, 119
FatI	CATG	2 cut(s)	379, 392
Fnu4HI	GCNGC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	4
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	383, 396
HinfI	GANTC	5 cut(s)	170, 245, 302, 317, 350
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	5 cut(s)	11, 91, 169, 190, 355
Hpy188III	TCNNGA	3 cut(s)	104, 275, 306
Hpy8I	GTNNAC	1 cut(s)	40
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	89, 185
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4V	TGCA	1 cut(s)	231
HpyF3I	CTNAG	3 cut(s)	60, 90, 354
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	383, 396
LpnPI	CCDG	7 cut(s)	72, 104, 174, 234, 269, 291, 323
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	2 cut(s)	97, 358
MaeI	CTAG	1 cut(s)	203
MboII	GAAGA	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	155, 331
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	4 cut(s)	5, 85, 349, 409
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	5
NlaIII	CATG	2 cut(s)	383, 396
NlaIV	GGNNCC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	4 cut(s)	170, 245, 302, 350
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	286
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	326
SetI	ASST	7 cut(s)	39, 82, 163, 188, 201, 288, 360
SfaNI	GCATC	2 cut(s)	97, 358
SfcI	CTRYAG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SpeI	ACTAGT	1 cut(s)	202
Sse9I	AATT	2 cut(s)	155, 331
SspMI	CTAG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	155, 331
TfiI	GAWTC	4 cut(s)	170, 245, 302, 350
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	78, 342
TseI	GCWGC	1 cut(s)	228
TspRI	CASTG	2 cut(s)	78, 342
VpaK11BI	GGWCC	1 cut(s)	286
XagI	CCTNNNNNAGG	1 cut(s)	403
XapI	RAATTY	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.