No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411 |
| rosa_laevigata | RLG00000004201 RLG00000004202 RLG00000022917 |
| rosa_multiflora | Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360 |
| rosa_rugosa | Rorug07G0015700 |
| rosa_samantha | Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800 |
| rosa_wichuraiana | Rw7G012230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 181 |
| AcuI | CTGAAG | 1 cut(s) | 225 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 222 |
| AgsI | TTSAA | 1 cut(s) | 287 |
| AluBI | AGCT | 1 cut(s) | 251 |
| AluI | AGCT | 1 cut(s) | 251 |
| Alw26I | GTCTC | 1 cut(s) | 25 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 314 |
| AoxI | GGCC | 1 cut(s) | 181 |
| ApeKI | GCWGC | 2 cut(s) | 314, 329 |
| AspS9I | GGNCC | 1 cut(s) | 305 |
| AvaII | GGWCC | 1 cut(s) | 305 |
| BbvI | GCAGC | 2 cut(s) | 301, 316 |
| BcoDI | GTCTC | 1 cut(s) | 25 |
| BfaI | CTAG | 1 cut(s) | 276 |
| BfmI | CTRYAG | 1 cut(s) | 147 |
| BisI | GCNGC | 2 cut(s) | 315, 330 |
| BlsI | GCNGC | 2 cut(s) | 316, 331 |
| Bme18I | GGWCC | 1 cut(s) | 305 |
| BmgT120I | GGNCC | 1 cut(s) | 305 |
| BmiI | GGNNCC | 1 cut(s) | 306 |
| BmsI | GCATC | 1 cut(s) | 61 |
| BpmI | CTGGAG | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 1 cut(s) | 191 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 222 |
| Bse1I | ACTGG | 2 cut(s) | 45, 161 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 222 |
| BseMII | CTCAG | 3 cut(s) | 48, 243, 324 |
| BseNI | ACTGG | 2 cut(s) | 45, 161 |
| BseXI | GCAGC | 2 cut(s) | 301, 316 |
| BshFI | GGCC | 1 cut(s) | 183 |
| BslFI | GGGAC | 1 cut(s) | 318 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 222 |
| BsmAI | GTCTC | 1 cut(s) | 25 |
| BsmFI | GGGAC | 1 cut(s) | 318 |
| BsnI | GGCC | 1 cut(s) | 183 |
| BspANI | GGCC | 1 cut(s) | 183 |
| BspCNI | CTCAG | 3 cut(s) | 49, 244, 325 |
| BspLI | GGNNCC | 1 cut(s) | 306 |
| BsrI | ACTGG | 2 cut(s) | 45, 161 |
| Bst4CI | ACNGT | 1 cut(s) | 298 |
| Bst6I | CTCTTC | 1 cut(s) | 39 |
| BstDEI | CTNAG | 3 cut(s) | 57, 252, 333 |
| BstMAI | GTCTC | 1 cut(s) | 25 |
| BstSFI | CTRYAG | 1 cut(s) | 147 |
| BstV1I | GCAGC | 2 cut(s) | 301, 316 |
| BsuRI | GGCC | 1 cut(s) | 183 |
| BtsIMutI | CAGTG | 2 cut(s) | 38, 130 |
| CaiI | CAGNNNCTG | 1 cut(s) | 314 |
| Cfr13I | GGNCC | 1 cut(s) | 305 |
| CseI | GACGC | 1 cut(s) | 320 |
| CviAII | CATG | 2 cut(s) | 83, 96 |
| CviJI | RGCY | 4 cut(s) | 131, 183, 227, 251 |
| CviKI_1 | RGCY | 4 cut(s) | 131, 183, 227, 251 |
| DdeI | CTNAG | 3 cut(s) | 57, 252, 333 |
| EaeI | YGGCCR | 1 cut(s) | 181 |
| Eam1104I | CTCTTC | 1 cut(s) | 39 |
| EarI | CTCTTC | 1 cut(s) | 39 |
| Eco47I | GGWCC | 1 cut(s) | 305 |
| Eco57I | CTGAAG | 1 cut(s) | 225 |
| FaeI | CATG | 2 cut(s) | 86, 99 |
| FaiI | YATR | 2 cut(s) | 84, 97 |
| FaqI | GGGAC | 1 cut(s) | 318 |
| FatI | CATG | 2 cut(s) | 82, 95 |
| Fnu4HI | GCNGC | 2 cut(s) | 315, 330 |
| Fsp4HI | GCNGC | 2 cut(s) | 315, 330 |
| FspBI | CTAG | 1 cut(s) | 276 |
| GluI | GCNGC | 2 cut(s) | 315, 330 |
| GsuI | CTGGAG | 1 cut(s) | 153 |
| HaeIII | GGCC | 1 cut(s) | 183 |
| HgaI | GACGC | 1 cut(s) | 320 |
| Hin1II | CATG | 2 cut(s) | 86, 99 |
| HinfI | GANTC | 4 cut(s) | 5, 212, 272, 340 |
| Hpy166II | GTNNAC | 1 cut(s) | 38 |
| Hpy188I | TCNGA | 3 cut(s) | 58, 118, 196 |
| Hpy188III | TCNNGA | 1 cut(s) | 9 |
| Hpy8I | GTNNAC | 1 cut(s) | 38 |
| HpyAV | CCTTC | 1 cut(s) | 216 |
| HpyCH4III | ACNGT | 1 cut(s) | 298 |
| HpyF3I | CTNAG | 3 cut(s) | 57, 252, 333 |
| Hsp92II | CATG | 2 cut(s) | 86, 99 |
| LpnPI | CCDG | 5 cut(s) | 26, 117, 135, 174, 321 |
| Lsp1109I | GCAGC | 2 cut(s) | 301, 316 |
| LweI | GCATC | 1 cut(s) | 61 |
| MaeI | CTAG | 1 cut(s) | 276 |
| MboII | GAAGA | 4 cut(s) | 56, 151, 218, 221 |
| MlyI | GAGTC | 1 cut(s) | 281 |
| MmeI | TCCRAC | 1 cut(s) | 43 |
| MnlI | CCTC | 2 cut(s) | 52, 166 |
| MseI | TTAA | 2 cut(s) | 104, 231 |
| NlaIII | CATG | 2 cut(s) | 86, 99 |
| NlaIV | GGNNCC | 1 cut(s) | 306 |
| PfeI | GAWTC | 3 cut(s) | 5, 212, 340 |
| PkrI | GCNGC | 2 cut(s) | 316, 331 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| PspN4I | GGNNCC | 1 cut(s) | 306 |
| PspPI | GGNCC | 1 cut(s) | 305 |
| PstNI | CAGNNNCTG | 1 cut(s) | 314 |
| SaqAI | TTAA | 2 cut(s) | 104, 231 |
| SatI | GCNGC | 2 cut(s) | 315, 330 |
| Sau96I | GGNCC | 1 cut(s) | 305 |
| SchI | GAGTC | 1 cut(s) | 281 |
| SetI | ASST | 2 cut(s) | 63, 253 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| SfcI | CTRYAG | 1 cut(s) | 147 |
| SinI | GGWCC | 1 cut(s) | 305 |
| SmlI | CTYRAG | 1 cut(s) | 170 |
| SmoI | CTYRAG | 1 cut(s) | 170 |
| SspMI | CTAG | 1 cut(s) | 276 |
| TaaI | ACNGT | 1 cut(s) | 298 |
| TfiI | GAWTC | 3 cut(s) | 5, 212, 340 |
| Tru1I | TTAA | 2 cut(s) | 104, 231 |
| Tru9I | TTAA | 2 cut(s) | 104, 231 |
| TscAI | CASTG | 2 cut(s) | 45, 130 |
| TseI | GCWGC | 2 cut(s) | 314, 329 |
| TspDTI | ATGAA | 1 cut(s) | 261 |
| TspRI | CASTG | 2 cut(s) | 45, 130 |
| VpaK11BI | GGWCC | 1 cut(s) | 305 |
| XspI | CTAG | 1 cut(s) | 276 |