Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002837.1

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1283

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002837.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgtcatttctgggcttgaatcatggggatcctaacaactggtatcagagcccgcaactgggcctgtttctggtgagtccggcgctgcacgattatgggatctccagtgcttgttatctcacacattcgtctcaccctcacggtagccctagctacccactacctcctccccaatttccattgcaaccgagctacccacctcctccttcatttccagtccaatcgagttactcaccaccacctccccaaacaatcattaatggatgtagagtagtcgtcatgggtgcaaaagcaagagttgccaaaaagacccgaaacccagatctgctccgtgatgtgggtaagtactcgaggtccaacaggtaccacaagtgcggtctctgggtcatcaaggccagaaacggcgatgtattcccatgctacaacgccaaggcggcagttgtaattatggaggagcttcatcaactacttgtgggtcaaaaaactccaattactgagccggccttaaggccattgaattttgggtcactaccagctcctatggttgctgcgtctcttacggcgtcagggaagacatcgttctcagctactgctatagctggaggtacaatattggatttgagtaatgatatttctgttgtggtatctggaagtagtagtgaggataatattgttgttggtatgactaaaaaacttgtgttgaatgttgataaaaatagtgctggaggtgttactgagaaattgaatattgtgagtaatagcatgggtgctagtacggaaaatagggagtctgagattcgaagtactgaaggggcagttgttacagtaaaatcaattgggaagctgcgagatggtaaggatttttttaagaaaggtcatcgtgaaggagaagcaccatttgagttcaagaaagatgcagatcaagtgattgaggagctcgataaagctgtagtgacaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

320

Amino Acids

34.43

Weight (kDa)

8.9

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	363
AciI	CCGC	3 cut(s)	53, 375, 434
AclWI	GGATC	3 cut(s)	23, 36, 107
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	828
AcyI	GRCGYC	1 cut(s)	563
AfaI	GTAC	5 cut(s)	347, 365, 607, 775, 805
AfiI	CCNNNNNNNGG	4 cut(s)	58, 59, 70, 337
AflII	CTTAAG	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	19, 517, 703, 745, 907
AluBI	AGCT	9 cut(s)	153, 192, 457, 536, 587, 599, 844, 937, 947
AluI	AGCT	9 cut(s)	153, 192, 457, 536, 587, 599, 844, 937, 947
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	3 cut(s)	135, 383, 558
AlwI	GGATC	3 cut(s)	23, 36, 107
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	349
AoxI	GGCC	4 cut(s)	61, 393, 501, 509
ApeKI	GCWGC	3 cut(s)	85, 548, 844
ApoI	RAATTY	1 cut(s)	517
AseI	ATTAAT	1 cut(s)	258
Asp718I	GGTACC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	61, 354
AsuHPI	GGTGA	3 cut(s)	85, 125, 225
AsuII	TTCGAA	1 cut(s)	799
AvaI	CYCGRG	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	28
BanI	GGYRCC	1 cut(s)	363
BanII	GRGCYC	2 cut(s)	53, 939
BbsI	GAAGAC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	3 cut(s)	72, 535, 831
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	2 cut(s)	418, 576
BcoDI	GTCTC	3 cut(s)	135, 383, 558
BfaI	CTAG	2 cut(s)	150, 771
BfmI	CTRYAG	2 cut(s)	594, 948
BfoI	RGCGCY	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	505
BglI	GCCNNNNNGGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	4 cut(s)	86, 435, 549, 845
BlsI	GCNGC	4 cut(s)	87, 436, 550, 846
BmcAI	AGTACT	2 cut(s)	347, 805
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	61, 354
BmiI	GGNNCC	2 cut(s)	30, 365
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	904
BmuI	ACTGGG	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	3 cut(s)	88, 621, 744
Bpu14I	TTCGAA	1 cut(s)	799
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	1 cut(s)	563
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 59, 70, 337
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	4 cut(s)	44, 63, 105, 215
Bse3DI	GCAATG	1 cut(s)	179
Bse8I	GATNNNNATC	1 cut(s)	918
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	269
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	4 cut(s)	58, 59, 70, 337
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	4 cut(s)	486, 597, 726, 783
BseNI	ACTGG	4 cut(s)	44, 63, 105, 215
BseRI	GAGGAG	4 cut(s)	156, 192, 467, 947
BseXI	GCAGC	3 cut(s)	72, 535, 831
BsgI	GTGCAG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	63, 395, 503, 511
BshNI	GGYRCC	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	939
BsiHKCI	CYCGRG	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	80, 500
BslI	CCNNNNNNNGG	4 cut(s)	58, 59, 70, 337
BsmAI	GTCTC	3 cut(s)	135, 383, 558
BsmBI	CGTCTC	2 cut(s)	135, 558
BsnI	GGCC	4 cut(s)	63, 395, 503, 511
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	349
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	2 cut(s)	53, 939
Bsp143I	GATC	4 cut(s)	28, 99, 322, 919
BspACI	CCGC	3 cut(s)	53, 375, 434
BspANI	GGCC	4 cut(s)	63, 395, 503, 511
BspCNI	CTCAG	4 cut(s)	487, 596, 727, 784
BspLI	GGNNCC	2 cut(s)	30, 365
BspPI	GGATC	3 cut(s)	23, 36, 107
BspT104I	TTCGAA	1 cut(s)	799
BspT107I	GGYRCC	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	4 cut(s)	44, 63, 105, 215
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	28, 99, 322, 919
BssNI	GRCGYC	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	143, 826
BstACI	GRCGYC	1 cut(s)	563
BstAFI	CTTAAG	1 cut(s)	505
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	2 cut(s)	53, 501
BstDEI	CTNAG	4 cut(s)	495, 583, 735, 792
BstF5I	GGATG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	4 cut(s)	31, 102, 325, 922
BstMAI	GTCTC	3 cut(s)	135, 383, 558
BstMBI	GATC	4 cut(s)	28, 99, 322, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 434
BstSFI	CTRYAG	2 cut(s)	594, 948
BstV1I	GCAGC	3 cut(s)	72, 535, 831
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	3 cut(s)	28, 99, 322
BstYI	RGATCY	3 cut(s)	28, 99, 322
BsuRI	GGCC	4 cut(s)	63, 395, 503, 511
BtgZI	GCGATG	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	53, 501
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	61, 354
CseI	GACGC	2 cut(s)	540, 552
Csp6I	GTAC	5 cut(s)	346, 364, 606, 774, 804
CviAII	CATG	4 cut(s)	23, 280, 417, 763
CviQI	GTAC	5 cut(s)	346, 364, 606, 774, 804
DdeI	CTNAG	4 cut(s)	495, 583, 735, 792
DpnI	GATC	4 cut(s)	30, 101, 324, 921
DpnII	GATC	4 cut(s)	28, 99, 322, 919
Ecl136II	GAGCTC	1 cut(s)	937
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	53, 939
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	937
Eco57I	CTGAAG	1 cut(s)	828
Eco88I	CYCGRG	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	937
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	53, 939
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	2 cut(s)	135, 558
FaeI	CATG	4 cut(s)	26, 283, 420, 766
FaiI	YATR	9 cut(s)	24, 96, 281, 418, 449, 542, 596, 683, 764
FatI	CATG	4 cut(s)	22, 279, 416, 762
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	86, 435, 549, 845
FokI	GGATG	1 cut(s)	276
FriOI	GRGCYC	2 cut(s)	53, 939
Fsp4HI	GCNGC	4 cut(s)	86, 435, 549, 845
FspBI	CTAG	2 cut(s)	150, 771
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	4 cut(s)	86, 435, 549, 845
GsuI	CTGGAG	3 cut(s)	88, 621, 744
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	4 cut(s)	63, 395, 503, 511
HapII	CCGG	2 cut(s)	80, 500
HgaI	GACGC	2 cut(s)	540, 552
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	26, 283, 420, 766
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	4 cut(s)	19, 76, 788, 796
HpaII	CCGG	2 cut(s)	80, 500
HphI	GGTGA	3 cut(s)	85, 125, 225
Hpy188I	TCNGA	2 cut(s)	48, 793
Hpy188III	TCNNGA	3 cut(s)	648, 881, 907
HpyAV	CCTTC	3 cut(s)	216, 803, 878
HpyCH4III	ACNGT	2 cut(s)	143, 826
HpyCH4V	TGCA	4 cut(s)	88, 184, 287, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 434
HpyF3I	CTNAG	4 cut(s)	495, 583, 735, 792
Hsp92I	GRCGYC	1 cut(s)	563
Hsp92II	CATG	4 cut(s)	26, 283, 420, 766
HspAI	GCGC	1 cut(s)	83
KpnI	GGTACC	1 cut(s)	367
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	28, 99, 322, 919
LmnI	GCTCC	4 cut(s)	333, 454, 541, 934
Lsp1109I	GCAGC	3 cut(s)	72, 535, 831
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	2 cut(s)	150, 771
MaeIII	GTNAC	5 cut(s)	227, 525, 730, 820, 952
MalI	GATC	4 cut(s)	30, 101, 324, 921
MboI	GATC	4 cut(s)	28, 99, 322, 919
MboII	GAAGA	1 cut(s)	583
MfeI	CAATTG	1 cut(s)	834
MflI	RGATCY	3 cut(s)	28, 99, 322
MhlI	GDGCHC	2 cut(s)	53, 939
MluCI	AATT	6 cut(s)	173, 444, 489, 517, 740, 834
MlyI	GAGTC	2 cut(s)	85, 797
MmeI	TCCRAC	1 cut(s)	381
MroNI	GCCGGC	1 cut(s)	499
MseI	TTAA	3 cut(s)	258, 506, 867
MslI	CAYNNNNRTG	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	505
MspI	CCGG	2 cut(s)	80, 500
MunI	CAATTG	1 cut(s)	834
MwoI	GCNNNNNNNGC	2 cut(s)	299, 434
NaeI	GCCGGC	1 cut(s)	501
NdeII	GATC	4 cut(s)	28, 99, 322, 919
NgoMIV	GCCGGC	1 cut(s)	499
NlaIII	CATG	4 cut(s)	26, 283, 420, 766
NlaIV	GGNNCC	2 cut(s)	30, 365
NmuCI	GTSAC	2 cut(s)	525, 952
NspV	TTCGAA	1 cut(s)	799
PaeR7I	CTCGAG	1 cut(s)	349
PdiI	GCCGGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	19, 796
PkrI	GCNGC	4 cut(s)	87, 436, 550, 846
PleI	GAGTC	2 cut(s)	84, 796
PpsI	GAGTC	2 cut(s)	84, 796
PshBI	ATTAAT	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	939
PspN4I	GGNNCC	2 cut(s)	30, 365
PspPI	GGNCC	2 cut(s)	61, 354
PspXI	VCTCGAGB	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	3 cut(s)	28, 99, 322
RsaI	GTAC	5 cut(s)	347, 365, 607, 775, 805
RsaNI	GTAC	5 cut(s)	346, 364, 606, 774, 804
RseI	CAYNNNNRTG	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	939
SaqAI	TTAA	3 cut(s)	258, 506, 867
SatI	GCNGC	4 cut(s)	86, 435, 549, 845
Sau3AI	GATC	4 cut(s)	28, 99, 322, 919
Sau96I	GGNCC	2 cut(s)	61, 354
ScaI	AGTACT	2 cut(s)	347, 805
SchI	GAGTC	2 cut(s)	85, 797
SduI	GDGCHC	2 cut(s)	53, 939
SfaNI	GCATC	1 cut(s)	904
SfcI	CTRYAG	2 cut(s)	594, 948
Sfr274I	CTCGAG	1 cut(s)	349
SfuI	TTCGAA	1 cut(s)	799
SinI	GGWCC	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	349, 505
SmoI	CTYRAG	2 cut(s)	349, 505
Sse9I	AATT	6 cut(s)	173, 444, 489, 517, 740, 834
SsiI	CCGC	3 cut(s)	53, 375, 434
SspI	AATATT	3 cut(s)	612, 670, 748
SspMI	CTAG	2 cut(s)	150, 771
SstI	GAGCTC	1 cut(s)	939
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	143, 826
TaqI	TCGA	4 cut(s)	224, 350, 799, 939
TasI	AATT	6 cut(s)	173, 444, 489, 517, 740, 834
TatI	WGTACW	2 cut(s)	345, 803
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	2 cut(s)	19, 796
Tru1I	TTAA	3 cut(s)	258, 506, 867
Tru9I	TTAA	3 cut(s)	258, 506, 867
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	2 cut(s)	525, 952
TseI	GCWGC	3 cut(s)	85, 548, 844
Tsp45I	GTSAC	2 cut(s)	525, 952
TspDTI	ATGAA	2 cut(s)	198, 449
TspGWI	ACGGA	2 cut(s)	320, 791
TspRI	CASTG	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	354
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	1 cut(s)	517
XhoI	CTCGAG	1 cut(s)	349
XspI	CTAG	2 cut(s)	150, 771
ZrmI	AGTACT	2 cut(s)	347, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.