Rh7CG147200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003967
Physical Location & Seq
Reverse (-)
12022778 .. 12026685
3908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG147200.1

Sequence Viewer

Length: 291 bp
ATGGCGGATCTTGAAGAAGACTATGAGATGGTTAATTGGCCTGAGATGAGTGATTCTGAGGATGAAGTTGAAATAAATGATTTTGTTGAGCTCACTCAGGATGAGTTGGACCGTGCCACAACAGAGAAATCTGATAGTGCTGAAGAAGAATCCACACGAAGGGCTTTTAATGTGATTGACAATGAAGCTGAGAAAGACCACAAAGACGAGTCTAGTGGGGTTGAAGTTTGGACTGTTGGGGGACCAGTCGCTGCCATTGACAATGCTGCTGAGATGATTCCGCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.79

Weight (kDa)

4.05

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 281
AclWI GGATC 1 cut(s) 15
AcuI CTGAAG 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 3 cut(s) 14, 71, 224
AluBI AGCT 2 cut(s) 91, 188
AluI AGCT 2 cut(s) 91, 188
Alw21I GWGCWC 1 cut(s) 93
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 251, 266
AspS9I GGNCC 2 cut(s) 109, 242
AvaII GGWCC 2 cut(s) 109, 242
BanII GRGCYC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 238, 253
BccI CCATC 1 cut(s) 22
BfaI CTAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 252, 267
BlsI GCNGC 2 cut(s) 253, 268
Bme18I GGWCC 2 cut(s) 109, 242
BmgT120I GGNCC 2 cut(s) 109, 242
BmiI GGNNCC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 67, 106
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 5 cut(s) 33, 48, 110, 180, 261
BseNI ACTGG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 238, 253
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 5, 281
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 5 cut(s) 34, 49, 109, 181, 262
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 245
BssMI GATC 1 cut(s) 7
Bst4CI ACNGT 2 cut(s) 113, 235
BstDEI CTNAG 5 cut(s) 42, 57, 96, 189, 270
BstF5I GGATG 2 cut(s) 67, 106
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 238, 253
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 2 cut(s) 67, 106
CaiI CAGNNNCTG 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 109, 242
CviJI RGCY 4 cut(s) 40, 91, 164, 188
CviKI_1 RGCY 4 cut(s) 40, 91, 164, 188
DdeI CTNAG 5 cut(s) 42, 57, 96, 189, 270
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
EciI GGCGGA 2 cut(s) 20, 270
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 109, 242
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 93
FaiI YATR 1 cut(s) 24
FaqI GGGAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 252, 267
FokI GGATG 2 cut(s) 74, 113
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 2 cut(s) 252, 267
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 252, 267
HaeIII GGCC 1 cut(s) 40
HinfI GANTC 4 cut(s) 53, 149, 209, 277
Hpy188I TCNGA 2 cut(s) 58, 133
Hpy188III TCNNGA 2 cut(s) 11, 98
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 113, 235
HpyF3I CTNAG 5 cut(s) 42, 57, 96, 189, 270
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 3 cut(s) 54, 83, 258
Lsp1109I GCAGC 2 cut(s) 238, 253
MaeI CTAG 1 cut(s) 213
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 4 cut(s) 26, 29, 155, 158
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 93
MluCI AATT 1 cut(s) 34
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 1 cut(s) 52
MseI TTAA 2 cut(s) 33, 168
NdeII GATC 1 cut(s) 7
NlaIV GGNNCC 1 cut(s) 243
PfeI GAWTC 3 cut(s) 53, 149, 277
PkrI GCNGC 2 cut(s) 253, 268
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 109, 242
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 7
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 2 cut(s) 33, 168
SatI GCNGC 2 cut(s) 252, 267
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 109, 242
SchI GAGTC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 93
SetI ASST 2 cut(s) 93, 190
SgeI CNNG 8 cut(s) 23, 53, 110, 125, 168, 220, 225, 257
SinI GGWCC 2 cut(s) 109, 242
Sse9I AATT 1 cut(s) 34
SsiI CCGC 2 cut(s) 5, 281
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 93
TaaI ACNGT 2 cut(s) 113, 235
TasI AATT 1 cut(s) 34
TfiI GAWTC 3 cut(s) 53, 149, 277
Tru1I TTAA 2 cut(s) 33, 168
Tru9I TTAA 2 cut(s) 33, 168
TseI GCWGC 2 cut(s) 251, 266
TspDTI ATGAA 2 cut(s) 78, 198
VpaK11BI GGWCC 2 cut(s) 109, 242
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.