Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Reverse (-)

12334761 .. 12339588

Gene Structure 4828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG144800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGTTAATTGGCCTGAGATGAGTGATTCTGAGGATGAAGTTGAAATAAATGATTTTGTTGAGCTCACTCAGGATGAGTTGGACCGTGCCACAACAGAGAAGATTGATTCTGGTAATGAAAACTCTGAAGCCGTGAAAACTTTAGTGGAAGAGTTTGATTCTAAGGGAGGACTTCATGATGGTGTCAAGCATGATTGTTTTCCATCTGCCTCCACAGATGGAAGGGCTTCAGTGGAACCTAAAGTATCTGAGAAAGGGCTTCTTGATACTATTCAGCAGGATTACTTCCCATCTGCCTCCATAGAGAGTTTTAAATTACCTCTTTCAGAATCAAAAAGGGTTGGGTCTGAAGGAAAGCCACTAGTCATCATTGATGATTATCTCCTTAAGTATTTTGATTCTGGTAAAGCTGATGTTAAGATTTTTCAAGAGTTTCCGGTCCTTGAGAAGATGGATTCCGGAAATAAAGAGCCTCAAAAGAAAACTTCACTGGAAGAGTTTGATTCTGAGAAATCTGATTTCAGTGTGGCTGGAGTGAAGATTGCTGCAGGACAGCCACCAGTCGTCAATGAGGATAATGGCTGGAAGAGTTTTGAATTACCTCTTTCAGAATCAAAAAGGGCTGGGTCTGAGGGAAAGCCAGTAGTCATCATTGATGATTATATAGGCTGCAGTAAGTATTTTGATTCTGGTGAAGTTGATGTTAAGATCTTTCAAGAGTCTCCGCTCCTTGAGAAGATGGATTCTGGAAATAAAGTCTCACAAAAGAAAAGTTCACTGGAAGAGTTTGGTTCTGAGAAATCTGATTTCAGTGTGGCTGGAGTGAAGATTGCTACAGGACAGACACCAGTCGTCCTTGAGGATAATGGCCGAAAGGTGTTTCATTTCCTGTTTCCTTCAAAAGAGGTGTGGTTTGTAGGACTAGGAGGTTCTGTGCTCCTTTTATGTTCTTGTCATAATGTAATATTGGTTTTACTGCTTTTCAGAAATCTGATAGTGCTGAAGAAGAATCCACACGAAGGGCTTTTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

38.01

Weight (kDa)

4.68

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	458
AciI	CCGC	1 cut(s)	725
AcoI	YGGCCR	1 cut(s)	868
AcuI	CTGAAG	4 cut(s)	147, 213, 369, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	1019
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	5 cut(s)	44, 428, 596, 716, 900
AhlI	ACTAGT	1 cut(s)	361
AluBI	AGCT	2 cut(s)	64, 410
AluI	AGCT	2 cut(s)	64, 410
Alw21I	GWGCWC	2 cut(s)	66, 939
Alw26I	GTCTC	2 cut(s)	726, 763
Aor13HI	TCCGGA	1 cut(s)	458
AoxI	GGCC	2 cut(s)	11, 868
ApeKI	GCWGC	2 cut(s)	545, 669
Asp700I	GAANNNNTTC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	82, 439
AsuHPI	GGTGA	1 cut(s)	704
AvaII	GGWCC	2 cut(s)	82, 439
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	66, 939
BbvI	GCAGC	2 cut(s)	532, 656
BccI	CCATC	6 cut(s)	173, 211, 212, 298, 445, 733
BceAI	ACGGC	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	726, 763
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	2 cut(s)	362, 923
BfmI	CTRYAG	3 cut(s)	546, 670, 834
BfrI	CTTAAG	1 cut(s)	386
BglII	AGATCT	1 cut(s)	708
BisI	GCNGC	2 cut(s)	546, 670
BlsI	GCNGC	2 cut(s)	547, 671
Bme18I	GGWCC	2 cut(s)	82, 439
BmgT120I	GGNCC	2 cut(s)	82, 439
BmiI	GGNNCC	1 cut(s)	237
BoxI	GACNNNNGTC	1 cut(s)	848
BpmI	CTGGAG	2 cut(s)	552, 840
BpuEI	CTTGAG	3 cut(s)	464, 752, 878
BsaBI	GATNNNNATC	1 cut(s)	378
BsaWI	WCCGGW	2 cut(s)	436, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	918, 948
Bsc4I	CCNNNNNNNGG	1 cut(s)	1019
Bse1I	ACTGG	5 cut(s)	495, 560, 641, 783, 848
Bse8I	GATNNNNATC	1 cut(s)	378
BseAI	TCCGGA	1 cut(s)	458
BseGI	GGATG	2 cut(s)	40, 79
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	1019
BseMII	CTCAG	7 cut(s)	6, 21, 83, 240, 498, 621, 786
BseNI	ACTGG	5 cut(s)	495, 560, 641, 783, 848
BseXI	GCAGC	2 cut(s)	532, 656
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	2 cut(s)	13, 870
BsiHKAI	GWGCWC	2 cut(s)	66, 939
BsiSI	CCGG	2 cut(s)	437, 459
BslI	CCNNNNNNNGG	1 cut(s)	1019
BsmAI	GTCTC	2 cut(s)	726, 763
BsnI	GGCC	2 cut(s)	13, 870
Bsp1286I	GDGCHC	2 cut(s)	66, 939
Bsp13I	TCCGGA	1 cut(s)	458
Bsp143I	GATC	1 cut(s)	708
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	2 cut(s)	13, 870
BspCNI	CTCAG	7 cut(s)	7, 22, 82, 241, 499, 622, 787
BspEI	TCCGGA	1 cut(s)	458
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	2 cut(s)	550, 674
BspTI	CTTAAG	1 cut(s)	386
BsrBI	CCGCTC	1 cut(s)	727
BsrI	ACTGG	5 cut(s)	495, 560, 641, 783, 848
BssMI	GATC	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	4 cut(s)	144, 489, 581, 777
BstAFI	CTTAAG	1 cut(s)	386
BstDEI	CTNAG	8 cut(s)	15, 30, 69, 162, 249, 507, 630, 795
BstF5I	GGATG	2 cut(s)	40, 79
BstKTI	GATC	1 cut(s)	711
BstMAI	GTCTC	2 cut(s)	726, 763
BstMBI	GATC	1 cut(s)	708
BstPAI	GACNNNNGTC	1 cut(s)	848
BstSFI	CTRYAG	3 cut(s)	546, 670, 834
BstV1I	GCAGC	2 cut(s)	532, 656
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
BsuRI	GGCC	2 cut(s)	13, 870
BtsCI	GGATG	2 cut(s)	40, 79
BtsIMutI	CAGTG	5 cut(s)	237, 488, 529, 776, 817
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	82, 439
CviAII	CATG	2 cut(s)	176, 191
DdeI	CTNAG	8 cut(s)	15, 30, 69, 162, 249, 507, 630, 795
DpnI	GATC	1 cut(s)	710
DpnII	GATC	1 cut(s)	708
DraI	TTTAAA	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	868
Eam1104I	CTCTTC	4 cut(s)	144, 489, 581, 777
EarI	CTCTTC	4 cut(s)	144, 489, 581, 777
Ecl136II	GAGCTC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	2 cut(s)	82, 439
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	4 cut(s)	147, 213, 369, 1022
EcoICRI	GAGCTC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	2 cut(s)	179, 194
FaiI	YATR	7 cut(s)	177, 192, 302, 663, 665, 946, 957
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	2 cut(s)	175, 190
Fnu4HI	GCNGC	2 cut(s)	546, 670
FokI	GGATG	2 cut(s)	47, 86
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	546, 670
FspBI	CTAG	2 cut(s)	362, 923
GluI	GCNGC	2 cut(s)	546, 670
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	2 cut(s)	552, 840
HaeIII	GGCC	2 cut(s)	13, 870
HapII	CCGG	2 cut(s)	437, 459
Hin1II	CATG	2 cut(s)	179, 194
HpaII	CCGG	2 cut(s)	437, 459
HphI	GGTGA	1 cut(s)	704
Hpy166II	GTNNAC	1 cut(s)	776
Hpy188III	TCNNGA	7 cut(s)	71, 176, 263, 428, 459, 716, 747
Hpy8I	GTNNAC	1 cut(s)	776
HpyAV	CCTTC	4 cut(s)	216, 344, 906, 1013
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	548, 672
HpyF3I	CTNAG	8 cut(s)	15, 30, 69, 162, 249, 507, 630, 795
Hsp92II	CATG	2 cut(s)	179, 194
Kpn2I	TCCGGA	1 cut(s)	458
Kzo9I	GATC	1 cut(s)	708
LmnI	GCTCC	2 cut(s)	732, 942
Lsp1109I	GCAGC	2 cut(s)	532, 656
MaeI	CTAG	2 cut(s)	362, 923
MalI	GATC	1 cut(s)	710
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	1 cut(s)	708
MflI	RGATCY	1 cut(s)	708
MhlI	GDGCHC	2 cut(s)	66, 939
MluCI	AATT	3 cut(s)	7, 314, 596
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	60
MroI	TCCGGA	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	6 cut(s)	6, 312, 387, 417, 705, 1028
MslI	CAYNNNNRTG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	2 cut(s)	437, 459
NdeII	GATC	1 cut(s)	708
NlaIII	CATG	2 cut(s)	179, 194
NlaIV	GGNNCC	1 cut(s)	237
PagI	TCATGA	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	547, 671
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	848
Psp124BI	GAGCTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	2 cut(s)	82, 439
PstI	CTGCAG	2 cut(s)	550, 674
PsuI	RGATCY	1 cut(s)	708
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	6 cut(s)	6, 312, 387, 417, 705, 1028
SatI	GCNGC	2 cut(s)	546, 670
Sau3AI	GATC	1 cut(s)	708
Sau96I	GGNCC	2 cut(s)	82, 439
SchI	GAGTC	1 cut(s)	728
SduI	GDGCHC	2 cut(s)	66, 939
SetI	ASST	8 cut(s)	66, 241, 322, 412, 604, 879, 909, 931
SfcI	CTRYAG	3 cut(s)	546, 670, 834
SinI	GGWCC	2 cut(s)	82, 439
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	4 cut(s)	386, 443, 731, 857
SmoI	CTYRAG	4 cut(s)	386, 443, 731, 857
SpeI	ACTAGT	1 cut(s)	361
Sse9I	AATT	3 cut(s)	7, 314, 596
SsiI	CCGC	1 cut(s)	725
SspI	AATATT	1 cut(s)	966
SspMI	CTAG	2 cut(s)	362, 923
SstI	GAGCTC	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	86
TasI	AATT	3 cut(s)	7, 314, 596
Tru1I	TTAA	6 cut(s)	6, 312, 387, 417, 705, 1028
Tru9I	TTAA	6 cut(s)	6, 312, 387, 417, 705, 1028
TscAI	CASTG	5 cut(s)	237, 495, 529, 783, 817
TseI	GCWGC	2 cut(s)	545, 669
TspDTI	ATGAA	4 cut(s)	51, 132, 164, 872
TspRI	CASTG	5 cut(s)	237, 495, 529, 783, 817
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	82, 439
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	2 cut(s)	362, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.