Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013203.1

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Reverse (-)

4602 .. 8053

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013203.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgactaaaaaacttgtgttgaatgttgataaaaatattgctggaggtgttactgagaaattgaatattgtgagtaatagcatgagtgctagtacggaaaataaggagtctgagattcgaagtactgaaggggcagttgttacagtaaaatcaattgggaagctgcaagatggtaaggatttttttaagaaaggtcatggtgaaggagaagcaccatttgagttcaagaaagatgcagatcaagtgattgaggagctcgataaagctgtagtgacaatgagaaaggttttagatgaagcaagtcttccttctaacttcatagatgctaaaatagatggcgttctttgctcaatagaggccattacatgcatcccacagtgtctatatgccatgtgcttaaataataattgttttcaggctatgaaagatcgcaatgctttgaggtgctttgtgaagtctactctgaacatttggttgaatgataatcttctgttttttcctcttgagaacaaatgggagaaaatgactttgtctcttgctgataagttggaaaaaatgggacataacagttttaaagcagcagtagatttttctatgtgtgctatcattgaatttggtattgtagctactctgaacatttggttgaatggtaatcttctgttttttcctcttgagaacaaatgggagaaaatgactttgtctcttgctgataagttggaaaaaatgggacataaaaagctacttaaaagatctgcggctgttatgtttgtcagcaaggatgtaaaatatcttgctctgggaagcaatgatggagatatatttgtggttgaagttaagaaaatggagcatgaactgattgcggtccgaaatcacatttcgtctcaaggagttgtgaacttgcttgaagaggtatctgaatttgcttttgcaaaattcgggatgtttttggctgttgcagttgcattttatatcttctttgagaagtctgataatttttggaacttccctcttgaaaattatcaacgagcaggacctaaatttggggcaattccaaagttatgtctgcttcataacttttgcaatgaccatatcaatgcaccaagacatgagttgggagctgatgtcatatcttcagacttttctcttcttaatgtggatgacctcgcagaccagcttgttgaacttgttgatttcttgggtttgaaaaaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006888 GO:0006950 GO:0007154 GO:0008047 GO:0008104 GO:0008150 GO:0009267 GO:0009306 GO:0009605 GO:0009987 GO:0009991 GO:0012505 GO:0015031 GO:0015698 GO:0015833 GO:0016020 GO:0016021 GO:0016036 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031224 GO:0031227 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0033554 GO:0042175 GO:0042594 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051716 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071496 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098772 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

WD40

Protein Analysis

404

Amino Acids

45.29

Weight (kDa)

5.73

Isoelectric Point (pI)

34.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	2 cut(s)	755, 860
AcsI	RAATTY	4 cut(s)	611, 917, 932, 1037
AcuI	CTGAAG	2 cut(s)	147, 1116
AfaI	GTAC	2 cut(s)	94, 124
AfiI	CCNNNNNNNGG	1 cut(s)	1040
AluBI	AGCT	7 cut(s)	163, 256, 266, 626, 739, 1118, 1174
AluI	AGCT	7 cut(s)	163, 256, 266, 626, 739, 1118, 1174
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	3 cut(s)	537, 705, 885
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	163, 578
ApoI	RAATTY	4 cut(s)	611, 917, 932, 1037
AspS9I	GGNCC	2 cut(s)	862, 1031
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	862, 1031
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	150, 590
BccI	CCATC	3 cut(s)	164, 329, 803
BcoDI	GTCTC	3 cut(s)	537, 705, 885
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	3 cut(s)	164, 579, 756
BlsI	GCNGC	3 cut(s)	165, 580, 757
BmcAI	AGTACT	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	862, 1031
BmgT120I	GGNCC	2 cut(s)	862, 1031
BmsI	GCATC	3 cut(s)	223, 313, 378
BpiI	GAAGAC	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	3 cut(s)	524, 692, 867
BsaBI	GATNNNNATC	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	1107, 1137
Bsc4I	CCNNNNNNNGG	1 cut(s)	1040
Bse3DI	GCAATG	3 cut(s)	439, 811, 1087
Bse8I	GATNNNNATC	1 cut(s)	237
BseGI	GGATG	4 cut(s)	369, 784, 945, 1162
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	1040
BseMI	GCAATG	3 cut(s)	439, 811, 1087
BseMII	CTCAG	2 cut(s)	45, 102
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	150, 590
BshFI	GGCC	1 cut(s)	359
BsiHKAI	GWGCWC	1 cut(s)	258
BslFI	GGGAC	2 cut(s)	573, 741
BslI	CCNNNNNNNGG	1 cut(s)	1040
BsmAI	GTCTC	3 cut(s)	537, 705, 885
BsmBI	CGTCTC	1 cut(s)	885
BsmFI	GGGAC	2 cut(s)	573, 741
BsnI	GGCC	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	238, 427, 749
BspACI	CCGC	2 cut(s)	755, 860
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	46, 103
BspT104I	TTCGAA	1 cut(s)	118
BsrDI	GCAATG	3 cut(s)	439, 811, 1087
BssMI	GATC	3 cut(s)	238, 427, 749
Bst4CI	ACNGT	3 cut(s)	145, 378, 569
Bst6I	CTCTTC	2 cut(s)	900, 1149
BstBI	TTCGAA	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	54, 111
BstF5I	GGATG	4 cut(s)	369, 784, 945, 1162
BstKTI	GATC	3 cut(s)	241, 430, 752
BstMAI	GTCTC	3 cut(s)	537, 705, 885
BstMBI	GATC	3 cut(s)	238, 427, 749
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	150, 590
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	4 cut(s)	369, 784, 945, 1162
BtsIMutI	CAGTG	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	862, 1031
CpoI	CGGWCCG	1 cut(s)	862
Csp6I	GTAC	2 cut(s)	93, 123
CspI	CGGWCCG	1 cut(s)	862
CviAII	CATG	6 cut(s)	82, 197, 366, 391, 848, 1106
CviQI	GTAC	2 cut(s)	93, 123
DdeI	CTNAG	2 cut(s)	54, 111
DpnI	GATC	3 cut(s)	240, 429, 751
DpnII	GATC	3 cut(s)	238, 427, 749
DraI	TTTAAA	1 cut(s)	574
Eam1104I	CTCTTC	2 cut(s)	900, 1149
EarI	CTCTTC	2 cut(s)	900, 1149
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	862, 1031
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	147, 1116
EcoICRI	GAGCTC	1 cut(s)	256
EcoO109I	RGGNCCY	1 cut(s)	1031
EcoT22I	ATGCAT	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	885
FaeI	CATG	6 cut(s)	85, 200, 369, 394, 851, 1109
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 292, 324
FaqI	GGGAC	2 cut(s)	573, 741
FatI	CATG	6 cut(s)	81, 196, 365, 390, 847, 1105
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	3 cut(s)	164, 579, 756
FokI	GGATG	4 cut(s)	356, 791, 952, 1169
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	164, 579, 756
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	3 cut(s)	164, 579, 756
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	359
Hin1II	CATG	6 cut(s)	85, 200, 369, 394, 851, 1109
HinfI	GANTC	2 cut(s)	107, 115
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	459, 895
Hpy188I	TCNGA	7 cut(s)	112, 465, 633, 866, 916, 988, 1135
Hpy188III	TCNNGA	5 cut(s)	226, 503, 671, 937, 1010
Hpy8I	GTNNAC	2 cut(s)	459, 895
HpyAV	CCTTC	3 cut(s)	122, 197, 318
HpyCH4III	ACNGT	3 cut(s)	145, 378, 569
HpyCH4V	TGCA	8 cut(s)	166, 236, 369, 929, 956, 962, 1080, 1097
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	2 cut(s)	54, 111
Hsp92II	CATG	6 cut(s)	85, 200, 369, 394, 851, 1109
Kzo9I	GATC	3 cut(s)	238, 427, 749
LmnI	GCTCC	3 cut(s)	253, 844, 1115
LpnPI	CCDG	5 cut(s)	27, 401, 782, 1014, 1184
Lsp1109I	GCAGC	2 cut(s)	150, 590
LweI	GCATC	3 cut(s)	223, 313, 378
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	3 cut(s)	49, 139, 271
MalI	GATC	3 cut(s)	240, 429, 751
MboI	GATC	3 cut(s)	238, 427, 749
MboII	GAAGA	7 cut(s)	296, 479, 647, 917, 964, 1122, 1136
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	749
MhlI	GDGCHC	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	528, 696
MnlI	CCTC	9 cut(s)	38, 244, 349, 435, 510, 678, 901, 1017, 1172
Mph1103I	ATGCAT	1 cut(s)	371
MseI	TTAA	6 cut(s)	186, 398, 573, 744, 834, 1149
MslI	CAYNNNNRTG	1 cut(s)	1092
MunI	CAATTG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	3 cut(s)	238, 427, 749
NlaIII	CATG	6 cut(s)	85, 200, 369, 394, 851, 1109
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	1 cut(s)	369
NspV	TTCGAA	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	115
PflFI	GACNNNGTC	2 cut(s)	529, 697
PkrI	GCNGC	3 cut(s)	165, 580, 757
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	1031
PspPI	GGNCC	2 cut(s)	862, 1031
PspPPI	RGGWCCY	1 cut(s)	1031
PsuI	RGATCY	1 cut(s)	749
PsyI	GACNNNGTC	2 cut(s)	529, 697
RsaI	GTAC	2 cut(s)	94, 124
RsaNI	GTAC	2 cut(s)	93, 123
RseI	CAYNNNNRTG	1 cut(s)	1092
Rsr2I	CGGWCCG	1 cut(s)	862
RsrII	CGGWCCG	1 cut(s)	862
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	6 cut(s)	186, 398, 573, 744, 834, 1149
SatI	GCNGC	3 cut(s)	164, 579, 756
Sau3AI	GATC	3 cut(s)	238, 427, 749
Sau96I	GGNCC	2 cut(s)	862, 1031
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	3 cut(s)	223, 313, 378
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	118
SinI	GGWCC	2 cut(s)	862, 1031
SmiMI	CAYNNNNRTG	1 cut(s)	1092
SmlI	CTYRAG	3 cut(s)	503, 671, 882
SmoI	CTYRAG	3 cut(s)	503, 671, 882
SsiI	CCGC	2 cut(s)	755, 860
SspI	AATATT	2 cut(s)	37, 67
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	258
TaaI	ACNGT	3 cut(s)	145, 378, 569
TaqI	TCGA	2 cut(s)	118, 258
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	6 cut(s)	186, 398, 573, 744, 834, 1149
Tru9I	TTAA	6 cut(s)	186, 398, 573, 744, 834, 1149
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	163, 578
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	5 cut(s)	307, 309, 437, 864, 1058
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	383
Tth111I	GACNNNGTC	2 cut(s)	529, 697
VpaK11BI	GGWCC	2 cut(s)	862, 1031
XapI	RAATTY	4 cut(s)	611, 917, 932, 1037
XceI	RCATGY	1 cut(s)	369
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	1 cut(s)	90
ZrmI	AGTACT	1 cut(s)	124
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.