Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Reverse (-)

12484846 .. 12489620

Gene Structure 4775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17384

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGATTCCGGAAATAAAGAGCCTCAAAAGAAAACTTCACTGGAAGAGTTTGATTCTGAGAAATCTGATTTCAGTGTGGCTGGAGTGAAGATTGCTGCAGGACAGCCACCAGTCGTCAATGAGGATAATGGCTGGAAGAGTTTTGAATTACCTCTTTCAGAATCAAAAAGGGCTGGGTCTGAGGGAAAGCCAGTAGTCATCATTGATGATTATATAGGCTGCAGTAAGTATTTTGATTCTGGTGAAGTTGATGTTAAGATCTTTCAAGAGTTTCCGCTCCTTGAGAAGATGGATTCTGGAAATAAAGTCTCACAAAAGAAAAGTTCACTGGAAGAGTTTGGTTCTGAGGTTGGACTTGATGCTGTCAAGCATGACCATTTTCCATGTGCCTTAACAGAGAAATCTGATTTCAGTGTGGCTGGAGTGAAGATTGCTACAGGACAGACACCAGTCGTCCTTGAGTATAATGGCCGAAAGGTGTTTCATTTCCTGTTTCCTTCAAAAGAGAAATCTGATAGTGCTGAAGAAGAATCCACACGAAGGGCTTTTAATGTGATTGACAATGAAGCTGAGAAAGACCACAAAGACGAGTCTAGTGGGGTTGAAGTTAGGACTGTTGGGGGACCAGACGCTGCCATTGACAATGCTGCTGAGATGATTCCGCCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.37

Weight (kDa)

4.76

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	277
AccIII	TCCGGA	1 cut(s)	8
AciI	CCGC	2 cut(s)	275, 662
AcoI	YGGCCR	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	543
AfiI	CCNNNNNNNGG	1 cut(s)	540
AgsI	TTSAA	4 cut(s)	146, 266, 501, 605
AluBI	AGCT	1 cut(s)	569
AluI	AGCT	1 cut(s)	569
Alw26I	GTCTC	1 cut(s)	313
AlwNI	CAGNNNCTG	1 cut(s)	632
Aor13HI	TCCGGA	1 cut(s)	8
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	4 cut(s)	95, 219, 632, 647
AspS9I	GGNCC	1 cut(s)	623
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	623
BbvI	GCAGC	4 cut(s)	82, 206, 619, 634
BccI	CCATC	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	3 cut(s)	96, 220, 435
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	4 cut(s)	96, 220, 633, 648
BlsI	GCNGC	4 cut(s)	97, 221, 634, 649
Bme18I	GGWCC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	1 cut(s)	624
BmsI	GCATC	1 cut(s)	349
BoxI	GACNNNNGTC	1 cut(s)	449
BpmI	CTGGAG	2 cut(s)	102, 441
BpuEI	CTTGAG	2 cut(s)	302, 479
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	540
Bse1I	ACTGG	5 cut(s)	45, 110, 191, 333, 449
BseAI	TCCGGA	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	540
BseMII	CTCAG	5 cut(s)	48, 171, 336, 561, 642
BseNI	ACTGG	5 cut(s)	45, 110, 191, 333, 449
BseXI	GCAGC	4 cut(s)	82, 206, 619, 634
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	471
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	1 cut(s)	540
BsmAI	GTCTC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	1 cut(s)	471
Bsp13I	TCCGGA	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	2 cut(s)	275, 662
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	5 cut(s)	49, 172, 337, 562, 643
BspEI	TCCGGA	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	624
BspMAI	CTGCAG	2 cut(s)	100, 224
BsrBI	CCGCTC	1 cut(s)	277
BsrI	ACTGG	5 cut(s)	45, 110, 191, 333, 449
BssMI	GATC	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	616
Bst6I	CTCTTC	3 cut(s)	39, 131, 327
BstDEI	CTNAG	5 cut(s)	57, 180, 345, 570, 651
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	258
BstPAI	GACNNNNGTC	1 cut(s)	449
BstSFI	CTRYAG	3 cut(s)	96, 220, 435
BstV1I	GCAGC	4 cut(s)	82, 206, 619, 634
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	471
BtsIMutI	CAGTG	4 cut(s)	38, 79, 326, 418
CaiI	CAGNNNCTG	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	623
CseI	GACGC	1 cut(s)	638
CviAII	CATG	2 cut(s)	371, 384
DdeI	CTNAG	5 cut(s)	57, 180, 345, 570, 651
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	3 cut(s)	39, 131, 327
EarI	CTCTTC	3 cut(s)	39, 131, 327
EciI	GGCGGA	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	543
FaeI	CATG	2 cut(s)	374, 387
FaiI	YATR	5 cut(s)	213, 215, 372, 385, 465
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	2 cut(s)	370, 383
Fnu4HI	GCNGC	4 cut(s)	96, 220, 633, 648
Fsp4HI	GCNGC	4 cut(s)	96, 220, 633, 648
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	4 cut(s)	96, 220, 633, 648
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	2 cut(s)	102, 441
HaeIII	GGCC	1 cut(s)	471
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	638
Hin1II	CATG	2 cut(s)	374, 387
HinfI	GANTC	8 cut(s)	5, 53, 161, 236, 293, 530, 590, 658
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	7 cut(s)	58, 67, 160, 181, 346, 406, 514
Hpy188III	TCNNGA	3 cut(s)	9, 266, 297
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	2 cut(s)	507, 534
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4V	TGCA	2 cut(s)	98, 222
HpyF3I	CTNAG	5 cut(s)	57, 180, 345, 570, 651
Hsp92II	CATG	2 cut(s)	374, 387
Kpn2I	TCCGGA	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	282
Lsp1109I	GCAGC	4 cut(s)	82, 206, 619, 634
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	594
MalI	GATC	1 cut(s)	260
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	1 cut(s)	258
MboII	GAAGA	8 cut(s)	56, 100, 148, 298, 344, 439, 536, 539
MflI	RGATCY	1 cut(s)	258
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	33, 115, 162, 175, 340
MroI	TCCGGA	1 cut(s)	8
MseI	TTAA	3 cut(s)	255, 392, 549
MspI	CCGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	374, 387
NlaIV	GGNNCC	1 cut(s)	624
PfeI	GAWTC	7 cut(s)	5, 53, 161, 236, 293, 530, 658
PkrI	GCNGC	4 cut(s)	97, 221, 634, 649
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PshAI	GACNNNNGTC	1 cut(s)	449
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	624
PspPI	GGNCC	1 cut(s)	623
PstI	CTGCAG	2 cut(s)	100, 224
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	255, 392, 549
SatI	GCNGC	4 cut(s)	96, 220, 633, 648
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	1 cut(s)	599
SetI	ASST	4 cut(s)	154, 351, 480, 571
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	3 cut(s)	96, 220, 435
SinI	GGWCC	1 cut(s)	623
SmlI	CTYRAG	2 cut(s)	281, 458
SmoI	CTYRAG	2 cut(s)	281, 458
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	275, 662
SspMI	CTAG	1 cut(s)	594
TaaI	ACNGT	1 cut(s)	616
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	7 cut(s)	5, 53, 161, 236, 293, 530, 658
Tru1I	TTAA	3 cut(s)	255, 392, 549
Tru9I	TTAA	3 cut(s)	255, 392, 549
TscAI	CASTG	4 cut(s)	45, 79, 333, 418
TseI	GCWGC	4 cut(s)	95, 219, 632, 647
TspDTI	ATGAA	2 cut(s)	473, 579
TspRI	CASTG	4 cut(s)	45, 79, 333, 418
VpaK11BI	GGWCC	1 cut(s)	623
XspI	CTAG	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.