Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Forward (+)

55645537 .. 55650304

Gene Structure 4768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGTTAATTGGCCTCAGATGAGTGATTTTGAGGATGATTTTGTTGAGCTCACTCAGGATGAGTTGGACCGTGCCACAACAGAGAAGATTGATTCTGGTAATGAAAACTCTGAAGCCGTGAAAACTTTAGTGGAAGAGTTTGATTCTAAGGGAGGACTTCATGATGGTGTCAAGCATGATTGTTTTCCATCTGCCTCCACAGATGGAAGGGCTTCAGTGGAACCTAAAGTATCTGAGAAAGGGCTTCTTGATGCTATTCAGCAGGATTACTTCCCATCTGCCTCCATAGAGAGTTTTGAATTACCTCTTTCAGAATCAAAAAGGGTTGGGTCTGAAGGAAAGCCACTAGTCATCATTGATGATTATATCCTTAAGTATTTTGATTCTGGTAAAGCTGATGTTAAGATTTTTCAAAAGTTTCCAGTCCTTGAGAAGATGGATTCTGGAAATAAAGAGCCTCAAAAGAAAACTTCACTGGAAGAGTTTGATTCTGAGAAATCTGATTTCAGTGTGGCTGGAGTGAAGATTGCTGCAGGACAGACACCAGTCGTCATTGAGGATAATGGCTGGAAGAGTTTTGAATTACCTCTTTCAGAATCAAAAAGGGCTGGGCCTGAGGGAAAGCCACTAGTCATCATTGATGATTATATAGGCTGCAGTAAGTATTTTGATTCTGGTGAAGTTGATGTTAAGAACTTTCAAGAATTTCCGCTCCTTGAGAAGATGGATTCTGGAAATAAAGTCTCACAAAAGAAAAGTTCACTGGAAGAGTTTGGTTCTGAGGTTGGACTTGATGCTGTCAAGCATGACCATTTTCCATGTGCCTTAACAGAGAAATCTGATTTCAGTGTGGCTGGAGTGAAGATTGCTACAGAACAGACACCAGTCGTCCTTGAGGATAATGGCCGAAAGAAATCTGATAGTGCTGAAGAAGAATCCACACGAAGGGCTTTTAATGTGATTGACAATGAAGCTGAGAAAGACCACAAAGACGAGTCTAGTGGGGTTGAAGTTAGGACTGTTGGGGGACCAGACGCTGCCATTGACAATGCTGCTGAGATGATTCCGGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

39.33

Weight (kDa)

4.52

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	712
AciI	CCGC	1 cut(s)	710
AcoI	YGGCCR	1 cut(s)	904
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	4 cut(s)	132, 198, 354, 948
AfiI	CCNNNNNNNGG	1 cut(s)	945
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	299, 413, 581, 701, 1010
AhlI	ACTAGT	2 cut(s)	346, 628
AluBI	AGCT	3 cut(s)	49, 395, 974
AluI	AGCT	3 cut(s)	49, 395, 974
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	748
AlwNI	CAGNNNCTG	1 cut(s)	1037
AoxI	GGCC	3 cut(s)	11, 611, 904
ApeKI	GCWGC	4 cut(s)	530, 654, 1037, 1052
ApoI	RAATTY	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	211
AspS9I	GGNCC	3 cut(s)	67, 611, 1028
AsuHPI	GGTGA	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	67, 1028
AxyI	CCTNAGG	1 cut(s)	615
BanII	GRGCYC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	517, 641, 1024, 1039
BccI	CCATC	6 cut(s)	158, 196, 197, 283, 430, 718
BceAI	ACGGC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	748
BcuI	ACTAGT	2 cut(s)	346, 628
BfaI	CTAG	3 cut(s)	347, 629, 999
BfmI	CTRYAG	3 cut(s)	531, 655, 870
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	4 cut(s)	531, 655, 1038, 1053
BlsI	GCNGC	4 cut(s)	532, 656, 1039, 1054
Bme18I	GGWCC	2 cut(s)	67, 1028
BmgT120I	GGNCC	3 cut(s)	67, 611, 1028
BmiI	GGNNCC	2 cut(s)	222, 1029
BmsI	GCATC	2 cut(s)	241, 784
BoxI	GACNNNNGTC	2 cut(s)	545, 884
BpmI	CTGGAG	2 cut(s)	537, 876
BpuEI	CTTGAG	3 cut(s)	449, 737, 914
Bsc4I	CCNNNNNNNGG	1 cut(s)	945
Bse1I	ACTGG	5 cut(s)	422, 480, 545, 768, 884
Bse21I	CCTNAGG	1 cut(s)	615
BseGI	GGATG	2 cut(s)	40, 64
BseLI	CCNNNNNNNGG	1 cut(s)	945
BseMII	CTCAG	8 cut(s)	29, 68, 225, 483, 606, 771, 966, 1047
BseNI	ACTGG	5 cut(s)	422, 480, 545, 768, 884
BseXI	GCAGC	4 cut(s)	517, 641, 1024, 1039
BseYI	CCCAGC	1 cut(s)	608
BshFI	GGCC	3 cut(s)	13, 613, 906
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	1067
BslFI	GGGAC	1 cut(s)	1041
BslI	CCNNNNNNNGG	1 cut(s)	945
BsmAI	GTCTC	1 cut(s)	748
BsmFI	GGGAC	1 cut(s)	1041
BsnI	GGCC	3 cut(s)	13, 613, 906
Bsp1286I	GDGCHC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	710
BspANI	GGCC	3 cut(s)	13, 613, 906
BspCNI	CTCAG	8 cut(s)	28, 67, 226, 484, 607, 772, 967, 1048
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	222, 1029
BspMAI	CTGCAG	2 cut(s)	535, 659
BspTI	CTTAAG	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	712
BsrI	ACTGG	5 cut(s)	422, 480, 545, 768, 884
Bst4CI	ACNGT	2 cut(s)	71, 1021
Bst6I	CTCTTC	4 cut(s)	129, 474, 566, 762
BstAFI	CTTAAG	1 cut(s)	371
BstDEI	CTNAG	9 cut(s)	15, 54, 147, 234, 492, 615, 780, 975, 1056
BstF5I	GGATG	2 cut(s)	40, 64
BstMAI	GTCTC	1 cut(s)	748
BstPAI	GACNNNNGTC	2 cut(s)	545, 884
BstSFI	CTRYAG	3 cut(s)	531, 655, 870
BstV1I	GCAGC	4 cut(s)	517, 641, 1024, 1039
Bsu36I	CCTNAGG	1 cut(s)	615
BsuRI	GGCC	3 cut(s)	13, 613, 906
BtsCI	GGATG	2 cut(s)	40, 64
BtsIMutI	CAGTG	5 cut(s)	222, 473, 514, 761, 853
CaiI	CAGNNNCTG	1 cut(s)	1037
CciI	TCATGA	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	67, 611, 1028
CseI	GACGC	1 cut(s)	1043
CviAII	CATG	4 cut(s)	161, 176, 806, 819
DdeI	CTNAG	9 cut(s)	15, 54, 147, 234, 492, 615, 780, 975, 1056
EaeI	YGGCCR	1 cut(s)	904
Eam1104I	CTCTTC	4 cut(s)	129, 474, 566, 762
EarI	CTCTTC	4 cut(s)	129, 474, 566, 762
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	2 cut(s)	67, 1028
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	4 cut(s)	132, 198, 354, 948
Eco81I	CCTNAGG	1 cut(s)	615
EcoICRI	GAGCTC	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	4 cut(s)	164, 179, 809, 822
FaiI	YATR	8 cut(s)	162, 177, 287, 366, 648, 650, 807, 820
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	1 cut(s)	1041
FatI	CATG	4 cut(s)	160, 175, 805, 818
Fnu4HI	GCNGC	4 cut(s)	531, 655, 1038, 1053
FokI	GGATG	2 cut(s)	47, 71
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	4 cut(s)	531, 655, 1038, 1053
FspBI	CTAG	3 cut(s)	347, 629, 999
GluI	GCNGC	4 cut(s)	531, 655, 1038, 1053
GsaI	CCCAGC	1 cut(s)	612
GsuI	CTGGAG	2 cut(s)	537, 876
HaeIII	GGCC	3 cut(s)	13, 613, 906
HapII	CCGG	1 cut(s)	1067
HgaI	GACGC	1 cut(s)	1043
Hin1II	CATG	4 cut(s)	164, 179, 809, 822
HpaII	CCGG	1 cut(s)	1067
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188III	TCNNGA	6 cut(s)	56, 161, 248, 444, 701, 732
Hpy8I	GTNNAC	1 cut(s)	761
HpyAV	CCTTC	3 cut(s)	201, 329, 939
HpyCH4III	ACNGT	2 cut(s)	71, 1021
HpyCH4V	TGCA	2 cut(s)	533, 657
HpyF3I	CTNAG	9 cut(s)	15, 54, 147, 234, 492, 615, 780, 975, 1056
Hsp92II	CATG	4 cut(s)	164, 179, 809, 822
LmnI	GCTCC	1 cut(s)	717
Lsp1109I	GCAGC	4 cut(s)	517, 641, 1024, 1039
LweI	GCATC	2 cut(s)	241, 784
MaeI	CTAG	3 cut(s)	347, 629, 999
MbiI	CCGCTC	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	7, 299, 581, 704
MlyI	GAGTC	1 cut(s)	1004
MmeI	TCCRAC	2 cut(s)	45, 766
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	6 cut(s)	6, 372, 402, 690, 827, 954
MslI	CAYNNNNRTG	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	1067
NlaIII	CATG	4 cut(s)	164, 179, 809, 822
NlaIV	GGNNCC	2 cut(s)	222, 1029
PagI	TCATGA	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	532, 656, 1039, 1054
PleI	GAGTC	1 cut(s)	1003
PpsI	GAGTC	1 cut(s)	1003
PshAI	GACNNNNGTC	2 cut(s)	545, 884
Psp124BI	GAGCTC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	608
PspN4I	GGNNCC	2 cut(s)	222, 1029
PspPI	GGNCC	3 cut(s)	67, 611, 1028
PstI	CTGCAG	2 cut(s)	535, 659
PstNI	CAGNNNCTG	1 cut(s)	1037
RseI	CAYNNNNRTG	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	6 cut(s)	6, 372, 402, 690, 827, 954
SatI	GCNGC	4 cut(s)	531, 655, 1038, 1053
Sau96I	GGNCC	3 cut(s)	67, 611, 1028
SchI	GAGTC	1 cut(s)	1004
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	7 cut(s)	51, 226, 307, 397, 589, 786, 976
SfaNI	GCATC	2 cut(s)	241, 784
SfcI	CTRYAG	3 cut(s)	531, 655, 870
SinI	GGWCC	2 cut(s)	67, 1028
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	4 cut(s)	371, 428, 716, 893
SmoI	CTYRAG	4 cut(s)	371, 428, 716, 893
SpeI	ACTAGT	2 cut(s)	346, 628
Sse9I	AATT	4 cut(s)	7, 299, 581, 704
SsiI	CCGC	1 cut(s)	710
SspMI	CTAG	3 cut(s)	347, 629, 999
SstI	GAGCTC	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	71, 1021
TasI	AATT	4 cut(s)	7, 299, 581, 704
Tru1I	TTAA	6 cut(s)	6, 372, 402, 690, 827, 954
Tru9I	TTAA	6 cut(s)	6, 372, 402, 690, 827, 954
TscAI	CASTG	5 cut(s)	222, 480, 514, 768, 853
TseI	GCWGC	4 cut(s)	530, 654, 1037, 1052
TspDTI	ATGAA	3 cut(s)	117, 149, 984
TspRI	CASTG	5 cut(s)	222, 480, 514, 768, 853
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	67, 1028
XapI	RAATTY	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	3 cut(s)	347, 629, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.