Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Forward (+)

3460558 .. 3461381

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTGCTAGTACAGGAAATCAGGAGTATGAGATTCAAAGTGCTGAAGGGGCTGTTGTTACAGTAAAATCGATTGGGAAGCTGCGAGATGGTAAGAAATTTTTGAAGAAAGGTCATGGTGAAGGAGAAGCACCATTTGATTTCAAGAAAAACGAGGAGCAAGTGATTGACGAGCTTGAGAAAACTGTAGTGACAATGAGGAAGGCTGTGAAAGATGCTTTGAGGTGCTTGGTTGAGTCCGAGTATACCTATTGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

86

Amino Acids

9.57

Weight (kDa)

5.85

Isoelectric Point (pI)

21.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	13 - 82	3.6e-07	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	38, 106, 145
AluBI	AGCT	2 cut(s)	82, 175
AluI	AGCT	2 cut(s)	82, 175
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	71
BseCI	ATCGAT	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	69
BshVI	ATCGAT	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	71
BssNAI	GTATAC	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	64, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	69
BstZ17I	GTATAC	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	71
ClaI	ATCGAT	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	4 cut(s)	53, 82, 175, 206
CviKI_1	RGCY	4 cut(s)	53, 82, 175, 206
CviQI	GTAC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	66
FaeI	CATG	1 cut(s)	119
FaiI	YATR	3 cut(s)	30, 117, 246
FatI	CATG	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	119
HinfI	GANTC	2 cut(s)	34, 236
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	23, 145
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	3 cut(s)	41, 116, 196
HpyCH4III	ACNGT	2 cut(s)	64, 187
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	1 cut(s)	8
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	58, 190
MboII	GAAGA	1 cut(s)	118
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	3 cut(s)	148, 192, 216
MseI	TTAA	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	259
SatI	GCNGC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	245
SetI	ASST	5 cut(s)	84, 115, 177, 227, 251
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	98
SspMI	CTAG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	64, 187
TaqI	TCGA	1 cut(s)	71
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.