RchiOBHm_Chr2g0127081

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002907
Physical Location & Seq
Forward (+)
41852964 .. 41856998
4035 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49898

Sequence Viewer

Length: 1227 bp
ATGGAGACTGGCTCGGAGGGAGAGAAGACGAGAGCTGAGGCTCAGGCTCAGGAAGGGGAGATCAGAACCAAGCGCAAAATGAAGACTCGTTCGCAGTTGGAAGTTCTTGAGCAAGCTTATGCAGCTGAGCAATACCCGTCGGAGTCGGTGAGAGCTGAGCTGTCGGCGAAATTGGATCTTTCCGATAGGCAACTACAGATGTGGTTCTGCCACCGGAGATTGAAGGACCGTAAGCCGACGCCGACGACCGGGAAGCGGCAGAGGAAGGACTCTCCGGCTGGAACGACTGGAGTGGTTTCTGAGGAAATGGCGGGGAGTGAGCCGCCGCCGCAGCAGTTGATAATAGAGGCTCGAGCTGTTGCTTTTGTGGAGGCGCAGCTGGGAGAGCCATTCAGGGAGGACGGGCCGATACTGGGCTTGGAGTTTGATCCGTTGCCACCGGGCGCATTTGGTTCCTCCGTAGGAGTGGCAACTGTTGGGCAGCAGAAGCAATCGGGATGGCCATATTCTGCAAATATATATGAGCAATCTAATGCTAAACCAATTAAGGGTGCTTCAAGGACTGTCCATGAATACCAGTTTCTTCCAGAAAAGCCAACTGTTAGGACAGACACTTATGAAAGGGCTGCCCCATCTCACCACTATGGTTCACCCACTGAATCTCGCCATGCAAGGATTCCATTATCTACTGTGTCCTCGTTCATTCATGGTAATGAACAAGTGCCCACTGTATATCGATTTCAAAGCCAGATGGCTGGGCTAAATCTTTTGTCACAGCAAGGCAGGGCTGGTCACCTCTTGCCATCTGCTGCAGAAGAATATGGCAATGTTCATGGAAAGAACTTCACGAATATTACCATGGATGCTCATTTTAGTGCTCACCCAATTAATCAACTGAACAATCCTTTTATACCATTTGCCAGAAGTGTGGCTCATGACGAGGATGATGTTTTAAGATTGGAAAGGAAGCACAAGAGTGAAGAAGCAAGAATAATGCGGGAAGTTGAAGCCCATGAGAAAAGGATACGTAAAGAGCTTGAAAAACAAGATATCCTGAGACGAAAGAGAGAAGAGCAAATAAGGAAAGAAATGGAGAGGATTGATCGGGAGAGGAGGAAGGAAGAAGAAAGGCTATTGCGTGAAAAGCAGAGAGAGGAGGAGAGATACCTAAGGGAGCAAAGGCGTGAACTGGAGCGAAAGGAAAATTCTTACAGAAGGAGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

408

Amino Acids

47.04

Weight (kDa)

8.9

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 22 - 78 3.9e-17 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 256, 311, 323, 326, 329, 997
AclWI GGATC 2 cut(s) 183, 422
AcoI YGGCCR 1 cut(s) 500
AcsI RAATTY 1 cut(s) 1204
AcyI GRCGYC 1 cut(s) 239
AfiI CCNNNNNNNGG 4 cut(s) 248, 255, 413, 548
AgsI TTSAA 5 cut(s) 223, 558, 743, 1007, 1040
AleI CACNNNNGTG 1 cut(s) 975
AluBI AGCT 8 cut(s) 35, 116, 125, 155, 160, 356, 379, 1036
AluI AGCT 8 cut(s) 35, 116, 125, 155, 160, 356, 379, 1036
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 1 cut(s) 1051
AlwI GGATC 2 cut(s) 183, 422
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 2 cut(s) 404, 500
ApeKI GCWGC 6 cut(s) 122, 331, 376, 481, 626, 809
ApoI RAATTY 1 cut(s) 1204
AseI ATTAAT 1 cut(s) 888
AspLEI GCGC 3 cut(s) 75, 376, 446
AspS9I GGNCC 2 cut(s) 226, 404
AsuC2I CCSGG 2 cut(s) 250, 441
AsuHPI GGTGA 5 cut(s) 160, 629, 642, 785, 872
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 1169
BaeGI GKGCMC 1 cut(s) 726
BalI TGGCCA 1 cut(s) 502
BbsI GAAGAC 2 cut(s) 32, 89
Bbv12I GWGCWC 1 cut(s) 880
BbvCI CCTCAGC 1 cut(s) 36
BbvI GCAGC 6 cut(s) 134, 343, 388, 493, 613, 796
BccI CCATC 4 cut(s) 492, 640, 745, 811
BciVI GTATCC 1 cut(s) 1017
BcnI CCSGG 2 cut(s) 250, 441
BcoDI GTCTC 1 cut(s) 1051
BfmI CTRYAG 2 cut(s) 194, 810
BfuI GTATCC 1 cut(s) 1017
BlpI GCTNAGC 2 cut(s) 126, 156
Bme1390I CCNGG 2 cut(s) 250, 441
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 2 cut(s) 226, 404
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 2 cut(s) 250, 441
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 853
BmuI ACTGGG 1 cut(s) 422
BpiI GAAGAC 2 cut(s) 32, 89
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 309, 1211
Bpu10I CCTNAGC 3 cut(s) 36, 42, 48
Bpu1102I GCTNAGC 2 cut(s) 126, 156
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 2 cut(s) 250, 441
Bsa29I ATCGAT 1 cut(s) 736
BsaAI YACGTR 1 cut(s) 1028
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 858
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 255, 413, 548
Bse1I ACTGG 5 cut(s) 13, 292, 417, 577, 1194
Bse21I CCTNAGG 1 cut(s) 1169
Bse3DI GCAATG 1 cut(s) 832
BseCI ATCGAT 1 cut(s) 736
BseDI CCNNGG 1 cut(s) 858
BseGI GGATG 3 cut(s) 503, 868, 949
BseLI CCNNNNNNNGG 4 cut(s) 248, 255, 413, 548
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 7 cut(s) 27, 56, 62, 117, 147, 291, 1046
BseNI ACTGG 5 cut(s) 13, 292, 417, 577, 1194
BseRI GAGGAG 3 cut(s) 1126, 1169, 1172
BseSI GKGCMC 1 cut(s) 726
BseXI GCAGC 6 cut(s) 134, 343, 388, 493, 613, 796
BseYI CCCAGC 2 cut(s) 379, 755
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 406, 502
BshVI ATCGAT 1 cut(s) 736
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 880
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 4 cut(s) 214, 249, 275, 440
BslI CCNNNNNNNGG 4 cut(s) 248, 255, 413, 548
BsmAI GTCTC 1 cut(s) 1051
BsmBI CGTCTC 1 cut(s) 1051
BsnI GGCC 2 cut(s) 406, 502
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 2 cut(s) 726, 880
Bsp143I GATC 4 cut(s) 60, 175, 427, 1102
Bsp1720I GCTNAGC 2 cut(s) 126, 156
Bsp19I CCATGG 1 cut(s) 858
BspACI CCGC 6 cut(s) 256, 311, 323, 326, 329, 997
BspANI GGCC 2 cut(s) 406, 502
BspCNI CTCAG 7 cut(s) 28, 55, 61, 118, 148, 292, 1047
BspDI ATCGAT 1 cut(s) 736
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 1 cut(s) 454
BspMAI CTGCAG 1 cut(s) 814
BspPI GGATC 2 cut(s) 183, 422
BspQI GCTCTTC 1 cut(s) 1065
BsrDI GCAATG 1 cut(s) 832
BsrI ACTGG 5 cut(s) 13, 292, 417, 577, 1194
BssECI CCNNGG 1 cut(s) 858
BssMI GATC 4 cut(s) 60, 175, 427, 1102
BssNI GRCGYC 1 cut(s) 239
BssT1I CCWWGG 1 cut(s) 858
Bst4CI ACNGT 6 cut(s) 230, 475, 565, 601, 691, 730
Bst6I CTCTTC 1 cut(s) 1065
BstACI GRCGYC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 1028
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 8 cut(s) 36, 42, 48, 126, 156, 300, 1055, 1169
BstDSI CCRYGG 1 cut(s) 858
BstEII GGTNACC 1 cut(s) 791
BstF5I GGATG 3 cut(s) 503, 868, 949
BstHHI GCGC 3 cut(s) 75, 376, 446
BstKTI GATC 4 cut(s) 63, 178, 430, 1105
BstMAI GTCTC 1 cut(s) 1051
BstMBI GATC 4 cut(s) 60, 175, 427, 1102
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 6 cut(s) 122, 328, 331, 385, 487, 1144
BstPI GGTNACC 1 cut(s) 791
BstSCI CCNGG 2 cut(s) 248, 439
BstSFI CTRYAG 2 cut(s) 194, 810
BstSLI GKGCMC 1 cut(s) 726
BstSNI TACGTA 1 cut(s) 1028
BstV1I GCAGC 6 cut(s) 134, 343, 388, 493, 613, 796
BstV2I GAAGAC 2 cut(s) 32, 89
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 2 cut(s) 755, 928
BstYI RGATCY 1 cut(s) 175
Bsu15I ATCGAT 1 cut(s) 736
Bsu36I CCTNAGG 1 cut(s) 1169
BsuI GTATCC 1 cut(s) 1017
BsuRI GGCC 2 cut(s) 406, 502
BsuTUI ATCGAT 1 cut(s) 736
BtgI CCRYGG 1 cut(s) 858
BtsCI GGATG 3 cut(s) 503, 868, 949
BtsIMutI CAGTG 2 cut(s) 654, 726
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 934
CfoI GCGC 3 cut(s) 75, 376, 446
Cfr13I GGNCC 2 cut(s) 226, 404
ClaI ATCGAT 1 cut(s) 736
CseI GACGC 1 cut(s) 247
CviAII CATG 7 cut(s) 569, 668, 707, 833, 859, 935, 1013
DdeI CTNAG 8 cut(s) 36, 42, 48, 126, 156, 300, 1055, 1169
DpnI GATC 4 cut(s) 62, 177, 429, 1104
DpnII GATC 4 cut(s) 60, 175, 427, 1102
EaeI YGGCCR 1 cut(s) 500
Eam1104I CTCTTC 1 cut(s) 1065
EarI CTCTTC 1 cut(s) 1065
Eco105I TACGTA 1 cut(s) 1028
Eco130I CCWWGG 1 cut(s) 858
Eco32I GATATC 1 cut(s) 1051
Eco47I GGWCC 1 cut(s) 226
Eco81I CCTNAGG 1 cut(s) 1169
Eco88I CYCGRG 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 791
EcoO65I GGTNACC 1 cut(s) 791
EcoRV GATATC 1 cut(s) 1051
EcoT14I CCWWGG 1 cut(s) 858
ErhI CCWWGG 1 cut(s) 858
Esp3I CGTCTC 1 cut(s) 1051
FaeI CATG 7 cut(s) 572, 671, 710, 836, 862, 938, 1016
FatI CATG 7 cut(s) 568, 667, 706, 832, 858, 934, 1012
FauI CCCGC 2 cut(s) 304, 990
FokI GGATG 3 cut(s) 510, 875, 956
GlaI GCGC 3 cut(s) 74, 375, 445
GsaI CCCAGC 2 cut(s) 383, 759
GsuI CTGGAG 2 cut(s) 309, 1211
HaeIII GGCC 2 cut(s) 406, 502
HapII CCGG 4 cut(s) 214, 249, 275, 440
HgaI GACGC 1 cut(s) 247
HhaI GCGC 3 cut(s) 75, 376, 446
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 7 cut(s) 572, 671, 710, 836, 862, 938, 1016
Hin6I GCGC 3 cut(s) 73, 374, 444
HinP1I GCGC 3 cut(s) 73, 374, 444
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 6 cut(s) 85, 143, 269, 659, 676, 1219
HpaII CCGG 4 cut(s) 214, 249, 275, 440
HphI GGTGA 5 cut(s) 160, 629, 642, 785, 872
Hpy166II GTNNAC 2 cut(s) 650, 1187
Hpy188I TCNGA 5 cut(s) 16, 65, 142, 184, 301
Hpy188III TCNNGA 8 cut(s) 50, 107, 495, 587, 847, 935, 1054, 1106
Hpy8I GTNNAC 2 cut(s) 650, 1187
Hpy99I CGWCG 3 cut(s) 142, 241, 247
HpyAV CCTTC 5 cut(s) 47, 217, 259, 1111, 1209
HpyCH4III ACNGT 6 cut(s) 230, 475, 565, 601, 691, 730
HpyCH4IV ACGT 1 cut(s) 1027
HpyCH4V TGCA 4 cut(s) 122, 512, 671, 812
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 328, 331, 385, 487, 1144
HpyF3I CTNAG 8 cut(s) 36, 42, 48, 126, 156, 300, 1055, 1169
HpySE526I ACGT 1 cut(s) 1027
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 7 cut(s) 572, 671, 710, 836, 862, 938, 1016
HspAI GCGC 3 cut(s) 73, 374, 444
Kzo9I GATC 4 cut(s) 60, 175, 427, 1102
LguI GCTCTTC 1 cut(s) 1065
LmnI GCTCC 2 cut(s) 1174, 1192
Lsp1109I GCAGC 6 cut(s) 134, 343, 388, 493, 613, 796
LweI GCATC 1 cut(s) 853
MaeII ACGT 1 cut(s) 1027
MaeIII GTNAC 2 cut(s) 771, 791
MalI GATC 4 cut(s) 62, 177, 429, 1104
MboI GATC 4 cut(s) 60, 175, 427, 1102
MboII GAAGA 8 cut(s) 37, 94, 575, 827, 992, 1082, 1133, 1136
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 2 cut(s) 726, 880
MlsI TGGCCA 1 cut(s) 502
MluCI AATT 4 cut(s) 170, 543, 885, 1204
MluNI TGGCCA 1 cut(s) 502
MlyI GAGTC 3 cut(s) 79, 152, 263
MmeI TCCRAC 2 cut(s) 78, 120
Mox20I TGGCCA 1 cut(s) 502
MscI TGGCCA 1 cut(s) 502
MseI TTAA 3 cut(s) 546, 888, 953
MslI CAYNNNNRTG 4 cut(s) 642, 711, 873, 975
Msp20I TGGCCA 1 cut(s) 502
MspA1I CMGCKG 2 cut(s) 125, 379
MspI CCGG 4 cut(s) 214, 249, 275, 440
MspR9I CCNGG 2 cut(s) 250, 441
MwoI GCNNNNNNNGC 6 cut(s) 122, 328, 331, 385, 487, 1144
NciI CCSGG 2 cut(s) 250, 441
NcoI CCATGG 1 cut(s) 858
NdeII GATC 4 cut(s) 60, 175, 427, 1102
NlaIII CATG 7 cut(s) 572, 671, 710, 836, 862, 938, 1016
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 771, 791
OliI CACNNNNGTG 1 cut(s) 975
PaeR7I CTCGAG 1 cut(s) 351
PagI TCATGA 1 cut(s) 934
PciSI GCTCTTC 1 cut(s) 1065
PfeI GAWTC 2 cut(s) 659, 676
PleI GAGTC 3 cut(s) 79, 151, 263
PpsI GAGTC 3 cut(s) 79, 151, 263
Ppu21I YACGTR 1 cut(s) 1028
PshBI ATTAAT 1 cut(s) 888
PspEI GGTNACC 1 cut(s) 791
PspFI CCCAGC 2 cut(s) 379, 755
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 2 cut(s) 226, 404
PspXI VCTCGAGB 1 cut(s) 351
PstI CTGCAG 1 cut(s) 814
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 2 cut(s) 125, 379
RseI CAYNNNNRTG 4 cut(s) 642, 711, 873, 975
SapI GCTCTTC 1 cut(s) 1065
SaqAI TTAA 3 cut(s) 546, 888, 953
Sau3AI GATC 4 cut(s) 60, 175, 427, 1102
Sau96I GGNCC 2 cut(s) 226, 404
SchI GAGTC 3 cut(s) 79, 152, 263
ScrFI CCNGG 2 cut(s) 250, 441
SduI GDGCHC 2 cut(s) 726, 880
SfaNI GCATC 1 cut(s) 853
SfcI CTRYAG 2 cut(s) 194, 810
Sfr274I CTCGAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 226
SlaI CTCGAG 1 cut(s) 351
SmiMI CAYNNNNRTG 4 cut(s) 642, 711, 873, 975
SmlI CTYRAG 2 cut(s) 107, 351
SmoI CTYRAG 2 cut(s) 107, 351
SnaBI TACGTA 1 cut(s) 1028
Sse9I AATT 4 cut(s) 170, 543, 885, 1204
SsiI CCGC 6 cut(s) 256, 311, 323, 326, 329, 997
SspI AATATT 1 cut(s) 853
StyD4I CCNGG 2 cut(s) 248, 439
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 6 cut(s) 230, 475, 565, 601, 691, 730
TaiI ACGT 1 cut(s) 1030
TaqI TCGA 2 cut(s) 352, 736
TasI AATT 4 cut(s) 170, 543, 885, 1204
TauI GCSGC 4 cut(s) 259, 325, 328, 331
TfiI GAWTC 2 cut(s) 659, 676
Tru1I TTAA 3 cut(s) 546, 888, 953
Tru9I TTAA 3 cut(s) 546, 888, 953
TscAI CASTG 2 cut(s) 661, 733
TseFI GTSAC 2 cut(s) 771, 791
TseI GCWGC 6 cut(s) 122, 331, 376, 481, 626, 809
Tsp45I GTSAC 2 cut(s) 771, 791
TspDTI ATGAA 7 cut(s) 95, 585, 633, 691, 695, 729, 821
TspGWI ACGGA 2 cut(s) 420, 448
TspRI CASTG 2 cut(s) 661, 733
VpaK11BI GGWCC 1 cut(s) 226
VspI ATTAAT 1 cut(s) 888
XapI RAATTY 1 cut(s) 1204
XhoI CTCGAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.