RLG00000023032

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002907
Physical Location & Seq
Forward (+)
16933134 .. 16933718
585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023032

Sequence Viewer

Length: 417 bp
ATGGAGACTGGCTCGAAGGGAGAGAAGACGAGAGCTCAGGCTCAAGAAGCTGAGCAATATCCATCGAAGTTGGTGAGAGCTAAGCTATCTGCGAAATTGGATCTTTCCGATCGGCAACTACAGATGTGGTTTTGCCACTGGAGATTGAAGGATCGTAAGCCGACGCCAACAACCAGGAAGCGTCAGAGGAAGGATTCTCCTACTGGAACGACTGGAGTGGTTTTTGAGGAAATGGCGGGGAGTGAGCTGCCGCCGCAGCAGTTGATAATAGAGGCTCGAGCTGTTGCTTTTGTGGAGGCGCAGCTGGGGGAGCCATTCAGGAAAGATGGGCCAATACTAGGCTTCGAGTTTGATCCGTTGCCACCAGGTGCATTTGGTTCCGTCATCATCAACACCACGCTTGTCATGAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

139

Amino Acids

15.5

Weight (kDa)

9.37

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 17 - 53 6.4e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 236, 251, 254
AclWI GGATC 3 cut(s) 108, 159, 347
AcsI RAATTY 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 164
AdeI CACNNNGTG 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 338
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 2 cut(s) 173, 364
AluBI AGCT 7 cut(s) 35, 50, 80, 85, 247, 281, 304
AluI AGCT 7 cut(s) 35, 50, 80, 85, 247, 281, 304
Alw21I GWGCWC 1 cut(s) 37
AlwI GGATC 3 cut(s) 108, 159, 347
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 247, 256, 301
ApoI RAATTY 1 cut(s) 410
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 276
BanII GRGCYC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 234, 268, 313
BccI CCATC 2 cut(s) 70, 320
BciT130I CCWGG 2 cut(s) 175, 366
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 119
BisI GCNGC 5 cut(s) 248, 251, 254, 257, 302
BlpI GCTNAGC 2 cut(s) 51, 81
BlsI GCNGC 5 cut(s) 249, 252, 255, 258, 303
Bme1390I CCNGG 2 cut(s) 175, 366
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 312, 379
BmrFI CCNGG 2 cut(s) 175, 366
BpiI GAAGAC 1 cut(s) 32
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 160, 234
Bpu10I CCTNAGC 1 cut(s) 36
Bpu1102I GCTNAGC 2 cut(s) 51, 81
BpuEI CTTGAG 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 338
Bse1I ACTGG 4 cut(s) 13, 143, 208, 217
BseBI CCWGG 2 cut(s) 175, 366
BseLI CCNNNNNNNGG 1 cut(s) 338
BseMII CTCAG 2 cut(s) 42, 50
BseNI ACTGG 4 cut(s) 13, 143, 208, 217
BseXI GCAGC 3 cut(s) 234, 268, 313
BseYI CCCAGC 1 cut(s) 304
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 338
BsnI GGCC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 4 cut(s) 100, 109, 151, 352
Bsp1720I GCTNAGC 2 cut(s) 51, 81
BspACI CCGC 3 cut(s) 236, 251, 254
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 2 cut(s) 43, 49
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 2 cut(s) 312, 379
BspPI GGATC 3 cut(s) 108, 159, 347
BsrI ACTGG 4 cut(s) 13, 143, 208, 217
BssMI GATC 4 cut(s) 100, 109, 151, 352
BssNI GRCGYC 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 175, 366
BstACI GRCGYC 1 cut(s) 164
BstDEI CTNAG 3 cut(s) 36, 51, 81
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 4 cut(s) 103, 112, 154, 355
BstMBI GATC 4 cut(s) 100, 109, 151, 352
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 4 cut(s) 47, 253, 256, 310
BstNI CCWGG 2 cut(s) 175, 366
BstSCI CCNGG 2 cut(s) 173, 364
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 234, 268, 313
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 405
CfoI GCGC 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 329
CseI GACGC 2 cut(s) 170, 172
CsiI ACCWGGT 1 cut(s) 364
CviAII CATG 1 cut(s) 406
DdeI CTNAG 3 cut(s) 36, 51, 81
DpnI GATC 4 cut(s) 102, 111, 153, 354
DpnII GATC 4 cut(s) 100, 109, 151, 352
DraIII CACNNNGTG 1 cut(s) 368
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 173, 364
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 1 cut(s) 409
FaiI YATR 1 cut(s) 407
FatI CATG 1 cut(s) 405
FauI CCCGC 1 cut(s) 229
Fnu4HI GCNGC 5 cut(s) 248, 251, 254, 257, 302
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 5 cut(s) 248, 251, 254, 257, 302
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 300
GluI GCNGC 5 cut(s) 248, 251, 254, 257, 302
GsaI CCCAGC 1 cut(s) 308
GsuI CTGGAG 2 cut(s) 160, 234
HaeIII GGCC 1 cut(s) 331
HgaI GACGC 2 cut(s) 170, 172
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 1 cut(s) 409
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 1 cut(s) 194
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 109, 186
Hpy188III TCNNGA 3 cut(s) 44, 319, 406
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 10, 142, 184
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 253, 256, 310
HpyF3I CTNAG 3 cut(s) 36, 51, 81
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 1 cut(s) 409
HspAI GCGC 1 cut(s) 299
Kzo9I GATC 4 cut(s) 100, 109, 151, 352
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 3 cut(s) 234, 268, 313
MabI ACCWGGT 1 cut(s) 364
MaeI CTAG 1 cut(s) 338
MalI GATC 4 cut(s) 102, 111, 153, 354
MboI GATC 4 cut(s) 100, 109, 151, 352
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 95, 410
MnlI CCTC 4 cut(s) 180, 220, 265, 289
MseI TTAA 1 cut(s) 415
MspA1I CMGCKG 1 cut(s) 304
MspR9I CCNGG 2 cut(s) 175, 366
MvaI CCWGG 2 cut(s) 175, 366
MwoI GCNNNNNNNGC 4 cut(s) 47, 253, 256, 310
NdeII GATC 4 cut(s) 100, 109, 151, 352
NlaIII CATG 1 cut(s) 409
NlaIV GGNNCC 2 cut(s) 312, 379
PaeR7I CTCGAG 1 cut(s) 276
PagI TCATGA 1 cut(s) 405
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 5 cut(s) 249, 252, 255, 258, 303
Ple19I CGATCG 1 cut(s) 112
Psp124BI GAGCTC 1 cut(s) 37
Psp6I CCWGG 2 cut(s) 173, 364
PspFI CCCAGC 1 cut(s) 304
PspGI CCWGG 2 cut(s) 173, 364
PspN4I GGNNCC 2 cut(s) 312, 379
PspPI GGNCC 1 cut(s) 329
PspXI VCTCGAGB 1 cut(s) 276
PsuI RGATCY 1 cut(s) 100
PvuI CGATCG 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 304
SacI GAGCTC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 5 cut(s) 248, 251, 254, 257, 302
Sau3AI GATC 4 cut(s) 100, 109, 151, 352
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 175, 366
SduI GDGCHC 1 cut(s) 37
SetI ASST 8 cut(s) 37, 52, 82, 87, 249, 283, 306, 370
SexAI ACCWGGT 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 119
Sfr274I CTCGAG 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 42, 276
SmoI CTYRAG 2 cut(s) 42, 276
Sse9I AATT 2 cut(s) 95, 410
SsiI CCGC 3 cut(s) 236, 251, 254
SspMI CTAG 1 cut(s) 338
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 2 cut(s) 173, 364
TaqI TCGA 4 cut(s) 14, 65, 277, 345
TasI AATT 2 cut(s) 95, 410
TauI GCSGC 2 cut(s) 253, 256
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TscAI CASTG 1 cut(s) 143
TseI GCWGC 3 cut(s) 247, 256, 301
TspGWI ACGGA 2 cut(s) 345, 370
TspRI CASTG 1 cut(s) 143
XapI RAATTY 1 cut(s) 410
XhoI CTCGAG 1 cut(s) 276
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.