Rroxscaffold_1G00026470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002907
Physical Location & Seq
Forward (+)
33356998 .. 33362901
5904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026470.1

Sequence Viewer

Length: 801 bp
ATGCGGGAATCTCTTTCATTCGTGTCACAATGGAGCCATGGAGCTGTGGAGGTCCCTGGAGCGGTCGCAATCTCGTGCACGGTACGCTTTATGTATCAACGACAGTATGAACAATCCGGTGGAATACATTGCAGCAGCAAATCCAATACACCTCCATCAAGGTTATGTTCAGAACCTTGTTATGGCGCTCCGAAGTGTCGGCAACCTCCGAACCTTGTGAAAACAAGGCTCCAATGCCTCCTTTCTTCCACAAAGACTCTCACTTGTTCCAAAAATCAGCAAGGTCACTGCCCGAAGCCATCCACCTCCTGCCTTCCTTTCCACCGCAACAAAACAAATGGCTTTGCATCACTTGCAAAACAAGCCACCCAAAAGCATATGTTTCTCCGTCAAATTGCAGCAGATCGAAGCTACGAGTATAGCAGCCATGCTACAAGTTTCTTTAAGAACAAGCTAAAAATAAAGGATACAAGAAAGCATGCGGCAATTACATTTAGCCACGAAGCTTGGTGGTGGAGGAAGAGGAGCAACTTAGATGGAGACAAGAAATACACTGGGCTTGATTTAAGCCCAAAGGAAAAAGCACAGGTGTCCGGATCACCTTTGGTTTACTTGAGCCCTCTCACTACGAAATTTGGGCCCATTCGAACTTCTGGCGGTGCGAAGCCCATCTCAAGTCACGAGCCCAACCTCAAAAGCTCAGCGGAATATACGTGTAATGAATCATTGGAATCGGGTGTGATGAATCTATGTGATGATCGCTATCTATGTGATGACCAGCGATATCTATGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.82

Weight (kDa)

9.3

Isoelectric Point (pI)

43.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 593
AciI CCGC 6 cut(s) 4, 62, 325, 482, 657, 704
AclWI GGATC 1 cut(s) 604
AcsI RAATTY 1 cut(s) 632
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 61, 182
AflIII ACRYGT 1 cut(s) 713
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 5 cut(s) 44, 411, 454, 506, 699
AluI AGCT 5 cut(s) 44, 411, 454, 506, 699
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 534
Alw44I GTGCAC 1 cut(s) 76
AlwI GGATC 1 cut(s) 604
Aor13HI TCCGGA 1 cut(s) 593
AoxI GGCC 1 cut(s) 638
ApaI GGGCCC 1 cut(s) 642
ApaLI GTGCAC 1 cut(s) 76
ApeKI GCWGC 4 cut(s) 132, 135, 398, 423
ApoI RAATTY 1 cut(s) 632
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 3 cut(s) 52, 638, 639
AsuHPI GGTGA 1 cut(s) 591
AsuII TTCGAA 1 cut(s) 646
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 80, 642
BanII GRGCYC 3 cut(s) 620, 642, 687
BauI CACGAG 2 cut(s) 73, 680
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 4 cut(s) 144, 147, 410, 435
BccI CCATC 4 cut(s) 163, 307, 530, 677
BciT130I CCWGG 1 cut(s) 57
BciVI GTATCC 1 cut(s) 460
BcoDI GTCTC 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 5 cut(s) 133, 136, 399, 424, 483
BlpI GCTNAGC 1 cut(s) 700
BlsI GCNGC 5 cut(s) 134, 137, 400, 425, 484
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 52, 638, 639
BmiI GGNNCC 4 cut(s) 35, 54, 230, 640
BmrFI CCNGG 1 cut(s) 57
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 700
Bpu14I TTCGAA 1 cut(s) 646
BpuEI CTTGAG 2 cut(s) 634, 658
BsaAI YACGTR 1 cut(s) 714
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 2 cut(s) 37, 55
BsaWI WCCGGW 2 cut(s) 116, 593
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 182
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 762
BseAI TCCGGA 1 cut(s) 593
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 37, 55
BseGI GGATG 1 cut(s) 299
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 2 cut(s) 61, 182
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 1 cut(s) 538
BseSI GKGCMC 2 cut(s) 80, 642
BseXI GCAGC 4 cut(s) 144, 147, 410, 435
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 640
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 2 cut(s) 117, 594
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 61, 182
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 640
Bsp119I TTCGAA 1 cut(s) 646
Bsp120I GGGCCC 1 cut(s) 638
Bsp1286I GDGCHC 4 cut(s) 80, 620, 642, 687
Bsp13I TCCGGA 1 cut(s) 593
Bsp143I GATC 3 cut(s) 403, 596, 757
Bsp1720I GCTNAGC 1 cut(s) 700
Bsp19I CCATGG 1 cut(s) 37
BspACI CCGC 6 cut(s) 4, 62, 325, 482, 657, 704
BspANI GGCC 1 cut(s) 640
BspCNI CTCAG 1 cut(s) 713
BspEI TCCGGA 1 cut(s) 593
BspLI GGNNCC 4 cut(s) 35, 54, 230, 640
BspPI GGATC 1 cut(s) 604
BspT104I TTCGAA 1 cut(s) 646
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 37, 55
BssMI GATC 3 cut(s) 403, 596, 757
BssSI CACGAG 2 cut(s) 73, 680
BssT1I CCWWGG 1 cut(s) 37
Bst2BI CACGAG 2 cut(s) 73, 680
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 82, 105
Bst6I CTCTTC 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 353
BstBAI YACGTR 1 cut(s) 714
BstBI TTCGAA 1 cut(s) 646
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 2 cut(s) 532, 700
BstDSI CCRYGG 1 cut(s) 37
BstF5I GGATG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 3 cut(s) 406, 599, 760
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 3 cut(s) 403, 596, 757
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 84, 353, 362
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 55
BstSLI GKGCMC 2 cut(s) 80, 642
BstV1I GCAGC 4 cut(s) 144, 147, 410, 435
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 640
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 286, 552
Cac8I GCNNGC 1 cut(s) 480
CfoI GCGC 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 52, 638, 639
Csp6I GTAC 1 cut(s) 83
CspCI CAANNNNNGTGG 2 cut(s) 488, 523
CviAII CATG 3 cut(s) 38, 428, 479
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 532, 700
DpnI GATC 3 cut(s) 405, 598, 759
DpnII GATC 3 cut(s) 403, 596, 757
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 37
Eco24I GRGCYC 3 cut(s) 620, 642, 687
Eco32I GATATC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 55
EcoRV GATATC 1 cut(s) 785
EcoT14I CCWWGG 1 cut(s) 37
EcoT38I GRGCYC 3 cut(s) 620, 642, 687
ErhI CCWWGG 1 cut(s) 37
FaeI CATG 3 cut(s) 41, 431, 482
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 37, 427, 478
FauNDI CATATG 1 cut(s) 378
Fnu4HI GCNGC 5 cut(s) 133, 136, 399, 424, 483
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 3 cut(s) 620, 642, 687
Fsp4HI GCNGC 5 cut(s) 133, 136, 399, 424, 483
GlaI GCGC 1 cut(s) 187
GluI GCNGC 5 cut(s) 133, 136, 399, 424, 483
GsuI CTGGAG 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 640
HapII CCGG 2 cut(s) 117, 594
HhaI GCGC 1 cut(s) 188
Hin1II CATG 3 cut(s) 41, 431, 482
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 5 cut(s) 8, 256, 722, 731, 745
HpaII CCGG 2 cut(s) 117, 594
HphI GGTGA 1 cut(s) 591
Hpy166II GTNNAC 2 cut(s) 78, 610
Hpy188I TCNGA 3 cut(s) 172, 192, 210
Hpy188III TCNNGA 2 cut(s) 594, 680
Hpy8I GTNNAC 2 cut(s) 78, 610
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 2 cut(s) 82, 105
HpyCH4IV ACGT 1 cut(s) 713
HpyCH4V TGCA 5 cut(s) 78, 132, 347, 356, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 353, 362
HpyF3I CTNAG 2 cut(s) 532, 700
HpySE526I ACGT 1 cut(s) 713
Hsp92II CATG 3 cut(s) 41, 431, 482
HspAI GCGC 1 cut(s) 186
Kpn2I TCCGGA 1 cut(s) 593
Kzo9I GATC 3 cut(s) 403, 596, 757
LmnI GCTCC 6 cut(s) 33, 41, 59, 193, 234, 525
LpnPI CCDG 9 cut(s) 42, 69, 130, 322, 540, 572, 607, 639, 791
Lsp1109I GCAGC 4 cut(s) 144, 147, 410, 435
LweI GCATC 1 cut(s) 356
MaeII ACGT 1 cut(s) 713
MaeIII GTNAC 3 cut(s) 24, 284, 677
MalI GATC 3 cut(s) 405, 598, 759
MbiI CCGCTC 1 cut(s) 62
MboI GATC 3 cut(s) 403, 596, 757
MboII GAAGA 2 cut(s) 237, 532
MhlI GDGCHC 4 cut(s) 80, 620, 642, 687
MluCI AATT 3 cut(s) 393, 486, 632
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 9 cut(s) 43, 162, 216, 248, 316, 510, 516, 630, 701
MroI TCCGGA 1 cut(s) 593
MseI TTAA 2 cut(s) 444, 566
MspA1I CMGCKG 1 cut(s) 704
MspI CCGG 2 cut(s) 117, 594
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 84, 353, 362
NcoI CCATGG 1 cut(s) 37
NdeI CATATG 1 cut(s) 378
NdeII GATC 3 cut(s) 403, 596, 757
NlaIII CATG 3 cut(s) 41, 431, 482
NlaIV GGNNCC 4 cut(s) 35, 54, 230, 640
NmuCI GTSAC 3 cut(s) 24, 284, 677
NspI RCATGY 1 cut(s) 482
NspV TTCGAA 1 cut(s) 646
PaeI GCATGC 1 cut(s) 482
PfeI GAWTC 4 cut(s) 8, 722, 731, 745
PkrI GCNGC 5 cut(s) 134, 137, 400, 425, 484
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 714
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 4 cut(s) 35, 54, 230, 640
PspOMI GGGCCC 1 cut(s) 638
PspPI GGNCC 3 cut(s) 52, 638, 639
PspPPI RGGWCCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 2 cut(s) 444, 566
SatI GCNGC 5 cut(s) 133, 136, 399, 424, 483
Sau3AI GATC 3 cut(s) 403, 596, 757
Sau96I GGNCC 3 cut(s) 52, 638, 639
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 4 cut(s) 80, 620, 642, 687
SfaNI GCATC 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 646
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 613, 673
SmoI CTYRAG 2 cut(s) 613, 673
SphI GCATGC 1 cut(s) 482
Sse9I AATT 3 cut(s) 393, 486, 632
SsiI CCGC 6 cut(s) 4, 62, 325, 482, 657, 704
StyD4I CCNGG 1 cut(s) 55
StyI CCWWGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 82, 105
TaiI ACGT 1 cut(s) 716
TaqI TCGA 2 cut(s) 406, 646
TasI AATT 3 cut(s) 393, 486, 632
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 4 cut(s) 8, 722, 731, 745
Tru1I TTAA 2 cut(s) 444, 566
Tru9I TTAA 2 cut(s) 444, 566
TscAI CASTG 2 cut(s) 293, 559
TseFI GTSAC 3 cut(s) 24, 284, 677
TseI GCWGC 4 cut(s) 132, 135, 398, 423
Tsp45I GTSAC 3 cut(s) 24, 284, 677
TspDTI ATGAA 4 cut(s) 6, 123, 735, 758
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 2 cut(s) 293, 559
VneI GTGCAC 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 632
XceI RCATGY 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.