Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002907

Physical Location & Seq

Genomic Coordinates Forward (+)

66801530 .. 66801865

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG477100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTGGTTTTGCCACCGGAGATTGAAGGACCATAAGCCGACGCCAACGACTGGGAAGCGACAAAGGAAAGATTCTTCTATTGGAAAGACTAGAATGGTTTCTAAGGAAATGGCGGGGAGTGAGCCGCCGCTGCAGCAATTGATAATAGAGGCTCGAGCTGTTGCTTTTGTGGAGGCGCAGCTGGGGGAGCCATTCAGGGAGGTTGGGCCATACTGGGCTTGGAGTTTGATCCATTGCCACCGGGTGCATTTGGTTCCGTTGTCATCAATGCCACGCTGTCCTTGTCGGCGCTGCTGCACATCATCGGCTCCGACACGTCCAGGGACCAGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

111

Amino Acids

12.55

Weight (kDa)

9.99

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44180 AT5G44180 AT5G44180
fragaria_vesca	FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700
rosa_chinensis	RchiOBHm_Chr2g0127081 RchiOBHm_Chr2g0127091
rosa_laevigata	RLG00000018980 RLG00000023032
rosa_multiflora	Rmu_sc0000023.1_g000012 Rmu_sc0008093.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026470 Rroxscaffold_2G00115760 Rroxscaffold_2G00116210 Rroxscaffold_5G00354400
rosa_rugosa	Rorug02G0277500 Rorug06G0129600 Rorug07G0322700
rosa_samantha	Rh1BG059500 Rh2AG328000 Rh2BG338000 Rh2CG315100 Rh2DG355100 Rh3DG168700 Rh4AG158500 Rh4DG153200 Rh7AG477100
rosa_wichuraiana	Rw2G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AciI	CCGC	3 cut(s)	113, 125, 128
AclWI	GGATC	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	25
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	2 cut(s)	158, 181
AluI	AGCT	2 cut(s)	158, 181
AlwI	GGATC	1 cut(s)	223
AlwNI	CAGNNNCTG	1 cut(s)	333
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	5 cut(s)	130, 133, 178, 291, 294
Asp700I	GAANNNNTTC	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	178, 291
AspS9I	GGNCC	3 cut(s)	28, 206, 324
AsuC2I	CCSGG	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	2 cut(s)	28, 324
BbvI	GCAGC	5 cut(s)	117, 145, 190, 278, 281
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	292
BisI	GCNGC	7 cut(s)	125, 128, 131, 134, 179, 292, 295
BlsI	GCNGC	7 cut(s)	126, 129, 132, 135, 180, 293, 296
Bme1390I	CCNGG	2 cut(s)	242, 321
Bme18I	GGWCC	2 cut(s)	28, 324
BmeT110I	CYCGRG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	3 cut(s)	28, 206, 324
BmiI	GGNNCC	4 cut(s)	189, 255, 309, 325
BmrFI	CCNGG	2 cut(s)	242, 321
BmrI	ACTGGG	2 cut(s)	60, 223
BmuI	ACTGGG	2 cut(s)	60, 223
BpuMI	CCSGG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	320
BsaWI	WCCGGW	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	3 cut(s)	55, 218, 327
Bse3DI	GCAATG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	232
BseNI	ACTGG	3 cut(s)	55, 218, 327
BseXI	GCAGC	5 cut(s)	117, 145, 190, 278, 281
BseYI	CCCAGC	1 cut(s)	181
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	16, 241
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	3 cut(s)	113, 125, 128
BspANI	GGCC	1 cut(s)	208
BspLI	GGNNCC	4 cut(s)	189, 255, 309, 325
BspMAI	CTGCAG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	55, 218, 327
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	228
BssNI	GRCGYC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	2 cut(s)	178, 291
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 133, 187
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	2 cut(s)	240, 319
BstSFI	CTRYAG	1 cut(s)	131
BstV1I	GCAGC	5 cut(s)	117, 145, 190, 278, 281
BsuRI	GGCC	1 cut(s)	208
BtrI	CACGTC	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	334
CaiI	CAGNNNCTG	1 cut(s)	333
CfoI	GCGC	2 cut(s)	178, 291
Cfr13I	GGNCC	3 cut(s)	28, 206, 324
CseI	GACGC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
DraIII	CACNNNGTG	1 cut(s)	244
Eco47I	GGWCC	2 cut(s)	28, 324
Eco88I	CYCGRG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	319
FaiI	YATR	2 cut(s)	33, 211
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	7 cut(s)	125, 128, 131, 134, 179, 292, 295
Fsp4HI	GCNGC	7 cut(s)	125, 128, 131, 134, 179, 292, 295
FspBI	CTAG	1 cut(s)	90
GlaI	GCGC	2 cut(s)	177, 290
GluI	GCNGC	7 cut(s)	125, 128, 131, 134, 179, 292, 295
GsaI	CCCAGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	2 cut(s)	16, 241
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	178, 291
Hin1I	GRCGYC	1 cut(s)	41
Hin6I	GCGC	2 cut(s)	176, 289
HinP1I	GCGC	2 cut(s)	176, 289
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	16, 241
Hpy188I	TCNGA	1 cut(s)	312
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	133, 247, 297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 133, 187
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	316
Hsp92I	GRCGYC	1 cut(s)	41
HspAI	GCGC	2 cut(s)	176, 289
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	187, 313
LpnPI	CCDG	7 cut(s)	29, 36, 167, 181, 199, 254, 306
Lsp1109I	GCAGC	5 cut(s)	117, 145, 190, 278, 281
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	1 cut(s)	316
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	137
MluCI	AATT	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	3 cut(s)	142, 166, 193
MroXI	GAANNNNTTC	1 cut(s)	97
MspA1I	CMGCKG	2 cut(s)	130, 181
MspI	CCGG	2 cut(s)	16, 241
MspR9I	CCNGG	2 cut(s)	242, 321
MunI	CAATTG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	3 cut(s)	130, 133, 187
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	228
NlaIV	GGNNCC	4 cut(s)	189, 255, 309, 325
PaeR7I	CTCGAG	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	7 cut(s)	126, 129, 132, 135, 180, 293, 296
Psp6I	CCWGG	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	4 cut(s)	189, 255, 309, 325
PspPI	GGNCC	3 cut(s)	28, 206, 324
PspXI	VCTCGAGB	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	333
PvuII	CAGCTG	1 cut(s)	181
SatI	GCNGC	7 cut(s)	125, 128, 131, 134, 179, 292, 295
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	3 cut(s)	28, 206, 324
ScrFI	CCNGG	2 cut(s)	242, 321
SetI	ASST	4 cut(s)	160, 183, 204, 319
SfcI	CTRYAG	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	153
SinI	GGWCC	2 cut(s)	28, 324
SlaI	CTCGAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	3 cut(s)	113, 125, 128
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	240, 319
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	137
TauI	GCSGC	2 cut(s)	127, 130
TfiI	GAWTC	1 cut(s)	71
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	5 cut(s)	130, 133, 178, 291, 294
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	28, 324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216
XhoI	CTCGAG	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.