Rh4AG158500

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002907
Physical Location & Seq
Forward (+)
40280093 .. 40280714
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG158500.1

Sequence Viewer

Length: 474 bp
ATGGATTTGTGGATTTGTGAGCTCTCTCTAAACCATGGCCGCTTCCTCCTACCCGAAAACCCCAAACGTCCTCCTCTCATCCATATGCAATCTCATGCCCATCCACCTCGAATCCACCAACCACTTCATCTGGTCTCATCTCATGACCACCATCTTCAATGCCCATGGCCTCGCTCCATGGAGACTGGCTCGGAGGGAGAGAAGACGAGAGCTCAAGCTCAGGAAGGTGAGATCAAAACCAAGCGCAAAATGAAGACTCGTTCGCAGTTGGAAGTTCTTGAGCAAGCTTATGCAGCTGAGCAATACCCGTCGGAGTCGGTGAGAGCTGAGCTGTCGGTGAAATTGGATCTTTCCGATTGGCAACTACAGGTCTGGTTTTGCCACTGGAGATTGAAGGACCGTAAGCTGACGCCAAAGACCGGGAAGCAGCAGAGGAAGGACTCTCTGGCTGGAACAACTGGAGGTGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

157

Amino Acids

18.17

Weight (kDa)

9.24

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 79 - 135 2.9e-15 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 40
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 1 cut(s) 37
AcyI GRCGYC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 2 cut(s) 158, 394
AluBI AGCT 8 cut(s) 22, 212, 218, 287, 296, 326, 331, 406
AluI AGCT 8 cut(s) 22, 212, 218, 287, 296, 326, 331, 406
Alw21I GWGCWC 2 cut(s) 24, 214
Alw26I GTCTC 2 cut(s) 139, 176
AlwI GGATC 1 cut(s) 354
AoxI GGCC 2 cut(s) 37, 167
ApeKI GCWGC 2 cut(s) 293, 427
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 397
AsuC2I CCSGG 1 cut(s) 421
AsuHPI GGTGA 3 cut(s) 239, 331, 349
AvaII GGWCC 1 cut(s) 397
BanII GRGCYC 2 cut(s) 24, 214
BbsI GAAGAC 2 cut(s) 209, 260
Bbv12I GWGCWC 2 cut(s) 24, 214
BbvI GCAGC 2 cut(s) 305, 439
BccI CCATC 2 cut(s) 108, 159
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 2 cut(s) 139, 176
BfmI CTRYAG 1 cut(s) 365
BisI GCNGC 3 cut(s) 40, 294, 428
BlpI GCTNAGC 2 cut(s) 297, 327
BlsI GCNGC 3 cut(s) 41, 295, 429
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 397
BmrFI CCNGG 1 cut(s) 421
BpiI GAAGAC 2 cut(s) 209, 260
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 1 cut(s) 406
Bpu10I CCTNAGC 1 cut(s) 219
Bpu1102I GCTNAGC 2 cut(s) 297, 327
BpuEI CTTGAG 2 cut(s) 198, 299
BpuMI CCSGG 1 cut(s) 421
BsaHI GRCGYC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 3 cut(s) 34, 164, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 3 cut(s) 190, 389, 463
BseDI CCNNGG 3 cut(s) 34, 164, 177
BseGI GGATG 2 cut(s) 78, 100
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 3 cut(s) 233, 288, 318
BseNI ACTGG 3 cut(s) 190, 389, 463
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 305, 439
BshFI GGCC 2 cut(s) 39, 169
BsiHKAI GWGCWC 2 cut(s) 24, 214
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 139, 176
BsnI GGCC 2 cut(s) 39, 169
Bso31I GGTCTC 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 24, 214
Bsp143I GATC 2 cut(s) 231, 346
Bsp1720I GCTNAGC 2 cut(s) 297, 327
Bsp19I CCATGG 3 cut(s) 34, 164, 177
BspACI CCGC 1 cut(s) 40
BspANI GGCC 2 cut(s) 39, 169
BspCNI CTCAG 3 cut(s) 232, 289, 319
BspHI TCATGA 1 cut(s) 142
BspPI GGATC 1 cut(s) 354
BspTNI GGTCTC 1 cut(s) 139
BsrI ACTGG 3 cut(s) 190, 389, 463
BssECI CCNNGG 3 cut(s) 34, 164, 177
BssMI GATC 2 cut(s) 231, 346
BssNI GRCGYC 1 cut(s) 410
BssT1I CCWWGG 3 cut(s) 34, 164, 177
Bst4CI ACNGT 1 cut(s) 401
BstACI GRCGYC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 3 cut(s) 219, 297, 327
BstDSI CCRYGG 3 cut(s) 34, 164, 177
BstF5I GGATG 2 cut(s) 78, 100
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 234, 349
BstMAI GTCTC 2 cut(s) 139, 176
BstMBI GATC 2 cut(s) 231, 346
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 365
BstV1I GCAGC 2 cut(s) 305, 439
BstV2I GAAGAC 2 cut(s) 209, 260
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 2 cut(s) 39, 169
BtgI CCRYGG 3 cut(s) 34, 164, 177
BtsCI GGATG 2 cut(s) 78, 100
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 285
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 397
CseI GACGC 1 cut(s) 418
CviAII CATG 5 cut(s) 35, 95, 143, 165, 178
DdeI CTNAG 3 cut(s) 219, 297, 327
DpnI GATC 2 cut(s) 233, 348
DpnII GATC 2 cut(s) 231, 346
EaeI YGGCCR 1 cut(s) 37
Ecl136II GAGCTC 2 cut(s) 22, 212
Eco130I CCWWGG 3 cut(s) 34, 164, 177
Eco24I GRGCYC 2 cut(s) 24, 214
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 2 cut(s) 22, 212
EcoICRI GAGCTC 2 cut(s) 22, 212
EcoT14I CCWWGG 3 cut(s) 34, 164, 177
EcoT38I GRGCYC 2 cut(s) 24, 214
ErhI CCWWGG 3 cut(s) 34, 164, 177
FaeI CATG 5 cut(s) 38, 98, 146, 168, 181
FaiI YATR 8 cut(s) 36, 84, 86, 96, 144, 166, 179, 291
FatI CATG 5 cut(s) 34, 94, 142, 164, 177
FauNDI CATATG 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 40, 294, 428
FokI GGATG 2 cut(s) 65, 87
FriOI GRGCYC 2 cut(s) 24, 214
Fsp4HI GCNGC 3 cut(s) 40, 294, 428
GlaI GCGC 1 cut(s) 245
GluI GCNGC 3 cut(s) 40, 294, 428
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 2 cut(s) 39, 169
HapII CCGG 1 cut(s) 420
HgaI GACGC 1 cut(s) 418
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 5 cut(s) 38, 98, 146, 168, 181
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 4 cut(s) 111, 256, 314, 440
HpaII CCGG 1 cut(s) 420
HphI GGTGA 3 cut(s) 239, 331, 349
Hpy188I TCNGA 4 cut(s) 193, 313, 355, 473
Hpy188III TCNNGA 3 cut(s) 143, 221, 278
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 3 cut(s) 218, 388, 430
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 88, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 3 cut(s) 219, 297, 327
HpySE526I ACGT 1 cut(s) 67
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 5 cut(s) 38, 98, 146, 168, 181
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 231, 346
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 2 cut(s) 305, 439
MaeII ACGT 1 cut(s) 67
MalI GATC 2 cut(s) 233, 348
MboI GATC 2 cut(s) 231, 346
MboII GAAGA 3 cut(s) 146, 214, 265
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 2 cut(s) 24, 214
MluCI AATT 1 cut(s) 341
MlyI GAGTC 3 cut(s) 250, 323, 434
MmeI TCCRAC 2 cut(s) 249, 291
MnlI CCTC 8 cut(s) 56, 81, 84, 117, 180, 187, 426, 455
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 293
NciI CCSGG 1 cut(s) 421
NcoI CCATGG 3 cut(s) 34, 164, 177
NdeI CATATG 1 cut(s) 84
NdeII GATC 2 cut(s) 231, 346
NlaIII CATG 5 cut(s) 38, 98, 146, 168, 181
PagI TCATGA 1 cut(s) 142
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 3 cut(s) 41, 295, 429
PleI GAGTC 3 cut(s) 250, 322, 434
PpsI GAGTC 3 cut(s) 250, 322, 434
Psp124BI GAGCTC 2 cut(s) 24, 214
PspPI GGNCC 1 cut(s) 397
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 2 cut(s) 24, 214
SatI GCNGC 3 cut(s) 40, 294, 428
Sau3AI GATC 2 cut(s) 231, 346
Sau96I GGNCC 1 cut(s) 397
SchI GAGTC 3 cut(s) 250, 323, 434
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 2 cut(s) 24, 214
SfcI CTRYAG 1 cut(s) 365
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 83
SmlI CTYRAG 2 cut(s) 213, 278
SmoI CTYRAG 2 cut(s) 213, 278
Sse9I AATT 1 cut(s) 341
SsiI CCGC 1 cut(s) 40
SstI GAGCTC 2 cut(s) 24, 214
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 3 cut(s) 34, 164, 177
TaaI ACNGT 1 cut(s) 401
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 109
TasI AATT 1 cut(s) 341
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 111
TscAI CASTG 1 cut(s) 389
TseI GCWGC 2 cut(s) 293, 427
TspDTI ATGAA 2 cut(s) 116, 266
TspRI CASTG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.