Rh2BG338000

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002907
Physical Location & Seq
Reverse (-)
44711362 .. 44725483
14122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG338000.1

Sequence Viewer

Length: 4929 bp
ATGGAGACTGGCTCGGAGGGAGAGAAGACGAGAGCTGAGGCTCAGGCTCAGGAAGGGGAGATCAGAACCAAGCGCAAAATGAAGACTCGTTCGCAGTTGGAAGTTCTTGAGCAAGCTTATGCAGCTGAGCAATACCCGTCGGAGTCGGTGAGAGCTGAGCTGTCGGCGAAATTGGATCTTTCCGATAGGCAACTACAGATGTGGTTCTGCCACCGGAGATTGAAGGACCGTAAGCCGACGCCGACGACCGGGAAGCGGCAGAGGAAGGACTCTCCGGCTGGAACGACTGGAGTGGTTTCTGAGGAAATGGCGGGGAGTGAGCCGCCGCCGCAGCAGTTGATAATAGAGGCTCGAGCTGTTGCTTTTGTGGAGGCGCAGCTGGGAGAGCCATTCAGGGAGGACGGGCCGATACTGGGCTTGGAGTTTGATCCGTTGCCACCGGGCGCATTTGGTTCCTCCGTAGGAGTGGCAACTGTTGGGCAGCAGAAGCAATCGGGATGGCCATATTCTGCAAATATATATGAGCAATCTAATGCTAAACCAATTAAGGGTGCTTCAAGGACTGTCCATGAATACCAGTTTCTTCCAGAAAAGCCAACTGTTAGGACAGACACTTATGAAAGGGCTGCCCCATCTCACCACTATGGTTCACCCACTGAATCTCGCCATGCAAGGATTCCATTATCTACTGTGTCCTCGTTCATTCATGGTAATGAACAAGTGCCCACTGTATATCGATTTCAAAGCCAGATGGCTGGGCTAAATCTTTTGTCACAGCAAGGCAGGGCTGGTCACCTCTTGCCATCTGCTGCAGAAGAATATGGCAATGTTCATGGAAAGAACTTCACGAATATTACCATGGATGCTCATTTTAGTGCTCACCCAATTAATCAACTGAACAATCCTTTTATACCATTTGCCAGAAGTGTGGCTCATGACGAGGATGATGTTTTAAGATTGGAAAGGAAGCACAAGAGTGAAGAAGCAAGAATAATGCGGGAAGTTGAAGCCCATGAGAAAAGGATACGTAAAGAGCTTGAAAAACAAGATATCCTGAGACGAAAGAGAGAAGAGCAAATAAGGAAAGAAATGGAGAGGATTGATCGGGAGAGGAGGAAGGAAGAAGAAAGGCTATTGCGTGAAAAGCAGAGAGAGGAGGAGAGATACCTAAGGGAGCAAAGGCGTGAACTGGAGCGAAAGGAAAAATTCTTACAGAAGGAGTCAATAAGAGCAGAGAAAATGAGACAAAAAGAAGAATTACGCAGAGAGAAAGAGGCAGCAAGGCTTAAAGCTGCTAATGAGAGAGCTATTGCTCGTAAAAATGCTAAAGAATCAATGGAACTCATTGAGGATGAATGCCTGGAACTCATGGAGTTAGCTGCATCAAGCAAGGAGCTTCCTTCCATGTTGTCTCTTGATTATGAAACCTTGCAAAATCTTGAATCATTTAGAGATATGCGGAGTACATTCCCACCCAAATCTGTGCAGTTGAAAAAACCTTTTGGTATTCAACCTTGGATAGATTCAGAGGAGAACATTGGCAATCTTCTTATGGCATGGAGATTCTTAATTACTTTTGTGGATGTTCTTGGGCTTTGGCCATTTACTCTCGATGAATTCGTTCAAGCTTTTCATGACTATGATTCTAGGTTGTTGGGTGAGATACATATTTCACTTCTAAGATCCATCATTAAAGACATTGAAGATGTTGCAAGAATACCCTCTATGGGGGTGGGAGCTAATCAGAACTGCGCTGCAAATCCTGGAGGCGGTCACCCTCAAATTGTAGAAGGGGCATATGCTTGGGGATTTGACATCAAAAGCTGGAAGTGCAACCTAAATCCACTGACATGGCCAGAAATATTGCGGCAATTTTCTGTATCAGCAGGATTTGGACCGCAACTGAAGAAGAGGGATGTTGAACCAGCTTATCTTCATGAGGACAATGAGGGTAATGATGTCAAGGATATAATTTCCAATTTACGCAGTGGAGTAGCTGTAAAAAATGCCTTCGCTATTATGCAAGAAAGGGGTTTTTCTAACCCTCGCAAATCAAGGCATTGCTTGACTCCTGGCACTGTTAAGTTCGCAGCATTTCATGTTCTTTCTCTTGAGGGGAGCAAGGGCCTTAACATATTAGAAGTTGCAGACAGGATTCAGAAATCAGGACTTCGGGATCTCACAACAAGCAAGACACCAGAAGCCTCGATAGCTGCTGCTTTGTCTAGGGACTCAAAACTATTTGAGAGAACTGCACCTTCTACTTACTGTGTACGTGCTCCCTACAGAAAGGACACAAGTGATTCCGAGGCAGTACTTTCGGCAGCCAGAGAAAGAATTCAAATATTCAATAGTAGGATTTTTGATGTTGAAGGAGCTGATGAAGCTGAAAGAGACGAAGAATCTGAAAGTGATGCAGTAGAGGATCCTGAGTTTGATGATTTAGGCACTGAAATAAATCCAAAGATAGTAGCTCAGAATTCTGAAGAAGCAAGAAAAGTCAGTGACGGAATATCTTTGGAAAGTGGAAAAGGAAGTTACGAGGTTAGTAAAGCTCCAGGAGACCTTAGGAATGTCACAGAAGGAATTCCTTCAATCAATTCTGAAGCGTCCATCAAGGTTGAAGACGCTGGTTGTTCCTTGGATTCTGTTGACGCTGCAGGAATCTGCAACAATGTAGCTAATCATGATCAAGAAGATACAGAGATTGATGATAGCAACCCTGGTGAGCCATGGGTTCAAGGACTTACAGAAGGGGAGTACTCTGATCTTAGTGTTGAGGAGCGCCTCAATGCACTTGCTGCATTAATTGGTGTGGCAATAGAAGGAAACTCGATTCGAATTGTTCTCGAGGAACGTTTAGATGCTGCAAATGCTTTAAAGAAGCAAATGTGGGCAGTGGCGCAAGTTGATAAACGGCGTCTAAAAGAAGAACATGTCATCAAAATGCAATATACCCCTTTCATTGGGAACAAGACTGAGCAGAGCCTGACAATTCCTTCAGAAAATAGGCAAAGTCCATCTCCTACCGTTGATGAGAAAAACATTGAGACGACGGTGAAGCTTTCCGTCCTGCAAGAGCAGATGGTTGATCCACAAAATGAGCAAAATTATATCAACAGTTTTCCTTCTGTACGAAACCTCCAAATGCAGGAGTACTCTGTTGGTCCAGACAATCACCCATTTCAGCAACCCGGTCTTATTGCTGATAAGTCGCACAAACAATTAAAATCTTATATTGGTCACAAAGCAGAGGAGATGTATGTTTATCGATCATTGCCTCTTGGTCAGGATCGTAGGCATAATAGATACTGGCAGTTTATTACATCTGCCTCTCGAAATGATCCTGGTTGTGGCAGGATCTTTGTTGAGCTGCATGACGGTCGTTGGAGGCTTATTGATTCTGAAGAGGGCTTTGATGGTCTTTTGGCATCTTTGGATGTGCGTGGGAATAGGGAATCCCATTTGCAGACAATGTTGCAGAAGACTGAAATATTCTTCAAGGAAACTGTTAGAAGAAACAAGTTGCATTCTAACCGGGGGAGGCATATCAAAGACACTGCTAAAACAGAAGATGTTGAAATGCCTTCTGGTTATGATTGCAGTGGTGGTACGGATAGCCCTACCAGCTCTGTTTCTGTTGCTGACTCCGATATGTTGGAGAGCTCAATGACTTTTTCAATTGAGCTAGGAAAGAACGAAACTGAGAAAACTGGTGCTTTAAACAGATATCAAGATCTGGAGAGGTGGATTTTGAAAGAAAGTGTTGGTTCTTCAATATTATGTGCTGACAAAAATGGGGAAAAAAGGTGTCCCCAGCTACTGGACATCTGCAATTCTTGTCGTGGAATTTTTTATTTTGAAGAGAATCACTGTCATTCTTGCCATAGAACTTTTGGCAAGGGCGAAATAGATTTTTCACAACATGTGGTACTGTGTAAAGAGAAACTGAAGTTGAATTCTGATTGTAATTTACGTGGCTCGAGTTCTTCTCCCCTTAGGATCAGGTTGCTGAAGGTGCTATTAGCTTTGACTGAGGTTTCTGTTCCATTAGAAGCTCTTCAACCTCTTTGGACCGACATGAACCGTAAATCTTGGGGTAGAAAGTTACATTCCTCGTCAACAGCTGAAGACCTTCTCCAGAAGCTTCCAACAAGATCTGCTGTCATGAAAAGTTCCAAGAATGAGGAGATCTCGGGAACTCCACATCAATCTGAAGATTCTAAAGAAGGCCACTGGGAGTATCTGGGGAGTGGACTTACCGGCTCTGGCCATGGACGAGGCCGTGGTCGAACTGGTGGTAGGCGAGTGCCAAAAAAGGCAATTGGTTTAAGGGGCAATCCTAGGAAGAAGAGTAGAGTTACAGCCAAAGATAAATTAGTACAGGTGCAAGTACTGAAATGGAAAGGCAGACCACGTGGACGAGGAGGGCGAAAGCGTGGAAATCGGAGCATTAGAGGCAAGGAGACAACGTTTAACAGGATAATTAAGATCGGTGGGGAGAGAACTGGCCCCAAAGACAGTGTCTATTATAAATCACCAGATGACTTGGTTGAGGAGAATTGGAACGTAGGTGAAACTGCGGCAGAAAATGCAAGCGGTTCTGGAAGGTCAGAGTATGAAGTGGAAAATGGGGATGCATCAGGAGATGAATTTGATCATGTGCATGTGGATGACTATGCCGGTGGCTTCAATGGCAAGTCTGATGACTTATTGGAGGGAGGCGAATATAACATGGAGGGTGATGAAGATGATGTCGACAATGAGGTGGATGACGATGAAGGTGAAGGAGCACAGGATTCGGATTTTGATGGTGCAAGATATATCAATGGAGAGTGGGATGAAGAGGAACACATAGCTGATGATGGACAGCAAGACATGGAACTTGGTGAAGGTACCAGATCTTCGTCTTCAGACTATAGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

1642

Amino Acids

184.76

Weight (kDa)

5.51

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 22 - 78 2.3e-16 Homeodomain
DDT PF02791 511 - 566 1.2e-18 DDT domain
HARE-HTH PF05066 692 - 759 1.1e-17 HB1, ASXL, restriction endonuclease HTH domain
WHIM1 PF15612 908 - 951 3.7e-10 WSTF, HB1, Itc1p, MBD9 motif 1
WSD PF15613 1090 - 1163 7.3e-22 Williams-Beuren syndrome DDT (WSD), D-TOX E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4533
Acc65I GGTACC 1 cut(s) 4895
AccB1I GGYRCC 1 cut(s) 4895
AccB7I CCANNNNNTGG 1 cut(s) 3823
AccI GTMKAC 1 cut(s) 4758
AclI AACGTT 2 cut(s) 2857, 4472
AcoI YGGCCR 4 cut(s) 500, 1598, 1853, 4270
AcsI RAATTY 8 cut(s) 1205, 1616, 2337, 2479, 2586, 3849, 3958, 4652
AcvI CACGTG 1 cut(s) 4418
AcyI GRCGYC 2 cut(s) 239, 2920
AflIII ACRYGT 2 cut(s) 2935, 3925
AjnI CCWGG 6 cut(s) 1359, 1762, 2071, 2557, 2722, 3346
AleI CACNNNNGTG 1 cut(s) 975
Alw21I GWGCWC 4 cut(s) 880, 2281, 3668, 4795
Alw26I GTCTC 7 cut(s) 1051, 1237, 1416, 2388, 2556, 3044, 4460
AlwNI CAGNNNCTG 2 cut(s) 2989, 3823
Ama87I CYCGRG 4 cut(s) 351, 2849, 3982, 4195
AoxI GGCC 9 cut(s) 404, 500, 1598, 1853, 2125, 4231, 4270, 4282, 4510
ApoI RAATTY 8 cut(s) 1205, 1616, 2337, 2479, 2586, 3849, 3958, 4652
ArsI GACNNNNNNTTYG 2 cut(s) 4509, 4541
AseI ATTAAT 2 cut(s) 888, 2807
Asp700I GAANNNNTTC 6 cut(s) 1620, 2337, 2586, 2590, 4059, 4134
Asp718I GGTACC 1 cut(s) 4895
AspA2I CCTAGG 1 cut(s) 4343
AspLEI GCGC 6 cut(s) 75, 376, 446, 1754, 2787, 2905
AspS9I GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4511
AsuC2I CCSGG 4 cut(s) 250, 441, 3195, 3539
AsuII TTCGAA 1 cut(s) 2839
AvaI CYCGRG 4 cut(s) 351, 2849, 3982, 4195
AvaII GGWCC 4 cut(s) 226, 1895, 3167, 4074
AvrII CCTAGG 1 cut(s) 4343
AxyI CCTNAGG 3 cut(s) 1169, 2567, 3998
BaeGI GKGCMC 1 cut(s) 726
BalI TGGCCA 4 cut(s) 502, 1600, 1855, 4272
BamHI GGATCC 1 cut(s) 2425
BanI GGYRCC 1 cut(s) 4895
BanII GRGCYC 1 cut(s) 3668
BarI GAAGNNNNNNTAC 2 cut(s) 4888, 4920
BbrPI CACGTG 1 cut(s) 4418
BbsI GAAGAC 6 cut(s) 32, 89, 2631, 3491, 4137, 4902
Bbv12I GWGCWC 4 cut(s) 880, 2281, 3668, 4795
BbvCI CCTCAGC 1 cut(s) 36
BceAI ACGGC 2 cut(s) 2933, 4269
BcgI CGANNNNNNTGC 6 cut(s) 2301, 2335, 3365, 3399, 4782, 4816
BciT130I CCWGG 6 cut(s) 1361, 1764, 2073, 2559, 2724, 3348
BciVI GTATCC 1 cut(s) 1017
BclI TGATCA 2 cut(s) 2689, 4657
BcnI CCSGG 4 cut(s) 250, 441, 3195, 3539
BcoDI GTCTC 7 cut(s) 1051, 1237, 1416, 2388, 2556, 3044, 4460
BfaI CTAG 4 cut(s) 1647, 2226, 3689, 4344
BfmI CTRYAG 5 cut(s) 194, 810, 2284, 2658, 4918
BfoI RGCGCY 1 cut(s) 2788
BfuI GTATCC 1 cut(s) 1017
BglII AGATCT 4 cut(s) 3736, 4157, 4191, 4901
BlnI CCTAGG 1 cut(s) 4343
BlpI GCTNAGC 2 cut(s) 126, 156
BmcAI AGTACT 4 cut(s) 2316, 2762, 3158, 4395
Bme18I GGWCC 4 cut(s) 226, 1895, 3167, 4074
BmeT110I CYCGRG 4 cut(s) 351, 2849, 3982, 4195
BmgT120I GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4511
BmiI GGNNCC 4 cut(s) 454, 2427, 4513, 4897
BmrI ACTGGG 2 cut(s) 422, 4246
BmsI GCATC 7 cut(s) 853, 1391, 2404, 2854, 3440, 4627, 4649
BmuI ACTGGG 2 cut(s) 422, 4246
BpiI GAAGAC 6 cut(s) 32, 89, 2631, 3491, 4137, 4902
BplI GAGNNNNNCTC 5 cut(s) 28, 3976, 4008, 4178, 4210
BpmI CTGGAG 6 cut(s) 309, 1211, 1785, 2541, 3761, 4124
Bpu10I CCTNAGC 3 cut(s) 36, 42, 48
Bpu1102I GCTNAGC 2 cut(s) 126, 156
Bpu14I TTCGAA 1 cut(s) 2839
BpuEI CTTGAG 2 cut(s) 128, 2132
BpuMI CCSGG 4 cut(s) 250, 441, 3195, 3539
Bsa29I ATCGAT 2 cut(s) 736, 3271
BsaAI YACGTR 4 cut(s) 1028, 2276, 3977, 4418
BsaHI GRCGYC 2 cut(s) 239, 2920
BsaI GGTCTC 1 cut(s) 2556
BsaWI WCCGGW 1 cut(s) 213
BsaXI ACNNNNNCTCC 6 cut(s) 1983, 2013, 3126, 3156, 4457, 4487
Bse118I RCCGGY 2 cut(s) 4262, 4682
Bse21I CCTNAGG 3 cut(s) 1169, 2567, 3998
Bse3DI GCAATG 3 cut(s) 832, 2059, 3275
BseBI CCWGG 6 cut(s) 1361, 1764, 2073, 2559, 2724, 3348
BseCI ATCGAT 2 cut(s) 736, 3271
BseMI GCAATG 3 cut(s) 832, 2059, 3275
BseRI GAGGAG 9 cut(s) 1126, 1169, 1172, 1544, 2795, 3269, 4202, 4440, 4571
BseSI GKGCMC 1 cut(s) 726
BseYI CCCAGC 3 cut(s) 379, 755, 3816
BsgI GTGCAG 2 cut(s) 1505, 2238
Bsh1285I CGRYCG 2 cut(s) 249, 3385
BshFI GGCC 9 cut(s) 406, 502, 1600, 1855, 2127, 4233, 4272, 4284, 4512
BshNI GGYRCC 1 cut(s) 4895
BshVI ATCGAT 2 cut(s) 736, 3271
BsiEI CGRYCG 2 cut(s) 249, 3385
BsiHKAI GWGCWC 4 cut(s) 880, 2281, 3668, 4795
BsiHKCI CYCGRG 4 cut(s) 351, 2849, 3982, 4195
BsiSI CCGG 8 cut(s) 214, 249, 275, 440, 3195, 3538, 4263, 4683
BslFI GGGAC 2 cut(s) 2243, 3798
BsmAI GTCTC 7 cut(s) 1051, 1237, 1416, 2388, 2556, 3044, 4460
BsmBI CGTCTC 3 cut(s) 1051, 2388, 3044
BsmFI GGGAC 2 cut(s) 2243, 3798
BsmI GAATGC 2 cut(s) 1361, 3529
BsnI GGCC 9 cut(s) 406, 502, 1600, 1855, 2127, 4233, 4272, 4284, 4512
Bso31I GGTCTC 1 cut(s) 2556
BsoBI CYCGRG 4 cut(s) 351, 2849, 3982, 4195
Bsp119I TTCGAA 1 cut(s) 2839
Bsp1286I GDGCHC 5 cut(s) 726, 880, 2281, 3668, 4795
Bsp1720I GCTNAGC 2 cut(s) 126, 156
Bsp19I CCATGG 3 cut(s) 858, 2732, 4273
BspANI GGCC 9 cut(s) 406, 502, 1600, 1855, 2127, 4233, 4272, 4284, 4512
BspDI ATCGAT 2 cut(s) 736, 3271
BspHI TCATGA 5 cut(s) 934, 1633, 1936, 2686, 4167
BspLI GGNNCC 4 cut(s) 454, 2427, 4513, 4897
BspMAI CTGCAG 2 cut(s) 814, 2662
BspQI GCTCTTC 2 cut(s) 1065, 4065
BspT104I TTCGAA 1 cut(s) 2839
BspT107I GGYRCC 1 cut(s) 4895
BspTNI GGTCTC 1 cut(s) 2556
BsrDI GCAATG 3 cut(s) 832, 2059, 3275
BsrFI RCCGGY 2 cut(s) 4262, 4682
BssAI RCCGGY 2 cut(s) 4262, 4682
BssNI GRCGYC 2 cut(s) 239, 2920
BssT1I CCWWGG 6 cut(s) 858, 1514, 2640, 2732, 4273, 4343
Bst2UI CCWGG 6 cut(s) 1361, 1764, 2073, 2559, 2724, 3348
Bst6I CTCTTC 7 cut(s) 1065, 1904, 3402, 3858, 4065, 4346, 4839
BstACI GRCGYC 2 cut(s) 239, 2920
BstAPI GCANNNNNTGC 2 cut(s) 2801, 4592
BstBAI YACGTR 4 cut(s) 1028, 2276, 3977, 4418
BstBI TTCGAA 1 cut(s) 2839
BstC8I GCNNGC 2 cut(s) 114, 4597
BstDSI CCRYGG 4 cut(s) 858, 2732, 4273, 4285
BstEII GGTNACC 2 cut(s) 791, 1772
BstH2I RGCGCY 1 cut(s) 2788
BstHHI GCGC 6 cut(s) 75, 376, 446, 1754, 2787, 2905
BstMAI GTCTC 7 cut(s) 1051, 1237, 1416, 2388, 2556, 3044, 4460
BstMCI CGRYCG 2 cut(s) 249, 3385
BstNI CCWGG 6 cut(s) 1361, 1764, 2073, 2559, 2724, 3348
BstNSI RCATGY 3 cut(s) 2939, 3929, 4670
BstPI GGTNACC 2 cut(s) 791, 1772
BstSFI CTRYAG 5 cut(s) 194, 810, 2284, 2658, 4918
BstSLI GKGCMC 1 cut(s) 726
BstSNI TACGTA 1 cut(s) 1028
BstV2I GAAGAC 6 cut(s) 32, 89, 2631, 3491, 4137, 4902
BstX2I RGATCY 9 cut(s) 175, 1682, 2176, 2425, 3360, 3736, 4157, 4191, 4901
BstXI CCANNNNNNTGG 3 cut(s) 755, 928, 1851
BstYI RGATCY 9 cut(s) 175, 1682, 2176, 2425, 3360, 3736, 4157, 4191, 4901
Bsu15I ATCGAT 2 cut(s) 736, 3271
Bsu36I CCTNAGG 3 cut(s) 1169, 2567, 3998
BsuI GTATCC 1 cut(s) 1017
BsuRI GGCC 9 cut(s) 406, 502, 1600, 1855, 2127, 4233, 4272, 4284, 4512
BsuTUI ATCGAT 2 cut(s) 736, 3271
BtgI CCRYGG 4 cut(s) 858, 2732, 4273, 4285
BtsI GCAGTG 4 cut(s) 1993, 2904, 3558, 3610
Cac8I GCNNGC 2 cut(s) 114, 4597
CaiI CAGNNNCTG 2 cut(s) 2989, 3823
CciI TCATGA 5 cut(s) 934, 1633, 1936, 2686, 4167
CfoI GCGC 6 cut(s) 75, 376, 446, 1754, 2787, 2905
Cfr10I RCCGGY 2 cut(s) 4262, 4682
Cfr13I GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4511
ClaI ATCGAT 2 cut(s) 736, 3271
CseI GACGC 5 cut(s) 247, 2598, 2636, 2663, 2909
DraI TTTAAA 2 cut(s) 2880, 3723
EaeI YGGCCR 4 cut(s) 500, 1598, 1853, 4270
Eam1104I CTCTTC 7 cut(s) 1065, 1904, 3402, 3858, 4065, 4346, 4839
EarI CTCTTC 7 cut(s) 1065, 1904, 3402, 3858, 4065, 4346, 4839
Ecl136II GAGCTC 1 cut(s) 3666
Eco105I TACGTA 1 cut(s) 1028
Eco130I CCWWGG 6 cut(s) 858, 1514, 2640, 2732, 4273, 4343
Eco24I GRGCYC 1 cut(s) 3668
Eco31I GGTCTC 1 cut(s) 2556
Eco32I GATATC 2 cut(s) 1051, 3731
Eco47I GGWCC 4 cut(s) 226, 1895, 3167, 4074
Eco53kI GAGCTC 1 cut(s) 3666
Eco72I CACGTG 1 cut(s) 4418
Eco81I CCTNAGG 3 cut(s) 1169, 2567, 3998
Eco88I CYCGRG 4 cut(s) 351, 2849, 3982, 4195
Eco91I GGTNACC 2 cut(s) 791, 1772
EcoICRI GAGCTC 1 cut(s) 3666
EcoO109I RGGNCCY 1 cut(s) 2125
EcoO65I GGTNACC 2 cut(s) 791, 1772
EcoRI GAATTC 5 cut(s) 1616, 2337, 2479, 2586, 3958
EcoRII CCWGG 6 cut(s) 1359, 1762, 2071, 2557, 2722, 3346
EcoRV GATATC 2 cut(s) 1051, 3731
EcoT14I CCWWGG 6 cut(s) 858, 1514, 2640, 2732, 4273, 4343
EcoT22I ATGCAT 1 cut(s) 4642
EcoT38I GRGCYC 1 cut(s) 3668
ErhI CCWWGG 6 cut(s) 858, 1514, 2640, 2732, 4273, 4343
Esp3I CGTCTC 3 cut(s) 1051, 2388, 3044
FaqI GGGAC 2 cut(s) 2243, 3798
FauI CCCGC 2 cut(s) 304, 990
FauNDI CATATG 1 cut(s) 1798
FbaI TGATCA 2 cut(s) 2689, 4657
FblI GTMKAC 1 cut(s) 4758
FriOI GRGCYC 1 cut(s) 3668
FspBI CTAG 4 cut(s) 1647, 2226, 3689, 4344
GlaI GCGC 6 cut(s) 74, 375, 445, 1753, 2786, 2904
GsaI CCCAGC 3 cut(s) 383, 759, 3820
GsuI CTGGAG 6 cut(s) 309, 1211, 1785, 2541, 3761, 4124
HaeII RGCGCY 1 cut(s) 2788
HaeIII GGCC 9 cut(s) 406, 502, 1600, 1855, 2127, 4233, 4272, 4284, 4512
HapII CCGG 8 cut(s) 214, 249, 275, 440, 3195, 3538, 4263, 4683
HgaI GACGC 5 cut(s) 247, 2598, 2636, 2663, 2909
HhaI GCGC 6 cut(s) 75, 376, 446, 1754, 2787, 2905
Hin1I GRCGYC 2 cut(s) 239, 2920
Hin6I GCGC 6 cut(s) 73, 374, 444, 1752, 2785, 2903
HinP1I GCGC 6 cut(s) 73, 374, 444, 1752, 2785, 2903
HincII GTYRAC 3 cut(s) 2653, 4122, 4759
HindII GTYRAC 3 cut(s) 2653, 4122, 4759
HindIII AAGCTT 4 cut(s) 114, 1626, 3062, 4145
HpaII CCGG 8 cut(s) 214, 249, 275, 440, 3195, 3538, 4263, 4683
Hpy166II GTNNAC 8 cut(s) 650, 1187, 2273, 2653, 4122, 4256, 4421, 4759
Hpy8I GTNNAC 8 cut(s) 650, 1187, 2273, 2653, 4122, 4256, 4421, 4759
Hpy99I CGWCG 4 cut(s) 142, 241, 247, 3058
HpyCH4IV ACGT 7 cut(s) 1027, 2275, 2857, 3976, 4417, 4472, 4569
HpySE526I ACGT 7 cut(s) 1027, 2275, 2857, 3976, 4417, 4472, 4569
Hsp92I GRCGYC 2 cut(s) 239, 2920
HspAI GCGC 6 cut(s) 73, 374, 444, 1752, 2785, 2903
KpnI GGTACC 1 cut(s) 4899
Ksp22I TGATCA 2 cut(s) 2689, 4657
LguI GCTCTTC 2 cut(s) 1065, 4065
LweI GCATC 7 cut(s) 853, 1391, 2404, 2854, 3440, 4627, 4649
MaeI CTAG 4 cut(s) 1647, 2226, 3689, 4344
MaeII ACGT 7 cut(s) 1027, 2275, 2857, 3976, 4417, 4472, 4569
MfeI CAATTG 2 cut(s) 3681, 4323
MflI RGATCY 9 cut(s) 175, 1682, 2176, 2425, 3360, 3736, 4157, 4191, 4901
MhlI GDGCHC 5 cut(s) 726, 880, 2281, 3668, 4795
MlsI TGGCCA 4 cut(s) 502, 1600, 1855, 4272
MluNI TGGCCA 4 cut(s) 502, 1600, 1855, 4272
MlyI GAGTC 7 cut(s) 79, 152, 263, 1229, 2062, 2225, 3641
MmeI TCCRAC 5 cut(s) 78, 120, 3368, 3639, 4175
Mox20I TGGCCA 4 cut(s) 502, 1600, 1855, 4272
Mph1103I ATGCAT 1 cut(s) 4642
MroXI GAANNNNTTC 6 cut(s) 1620, 2337, 2586, 2590, 4059, 4134
MscI TGGCCA 4 cut(s) 502, 1600, 1855, 4272
MslI CAYNNNNRTG 9 cut(s) 642, 711, 873, 975, 1638, 1849, 2945, 4665, 4671
Msp20I TGGCCA 4 cut(s) 502, 1600, 1855, 4272
MspA1I CMGCKG 3 cut(s) 125, 379, 4127
MspI CCGG 8 cut(s) 214, 249, 275, 440, 3195, 3538, 4263, 4683
MunI CAATTG 2 cut(s) 3681, 4323
Mva1269I GAATGC 2 cut(s) 1361, 3529
MvaI CCWGG 6 cut(s) 1361, 1764, 2073, 2559, 2724, 3348
NciI CCSGG 4 cut(s) 250, 441, 3195, 3539
NcoI CCATGG 3 cut(s) 858, 2732, 4273
NdeI CATATG 1 cut(s) 1798
NlaIV GGNNCC 4 cut(s) 454, 2427, 4513, 4897
NmuCI GTSAC 7 cut(s) 771, 791, 1772, 2504, 2575, 3242, 4922
NsiI ATGCAT 1 cut(s) 4642
NspI RCATGY 3 cut(s) 2939, 3929, 4670
NspV TTCGAA 1 cut(s) 2839
OliI CACNNNNGTG 1 cut(s) 975
PaeR7I CTCGAG 3 cut(s) 351, 2849, 3982
PagI TCATGA 5 cut(s) 934, 1633, 1936, 2686, 4167
PciI ACATGT 2 cut(s) 2935, 3925
PciSI GCTCTTC 2 cut(s) 1065, 4065
PcsI WCGNNNNNNNCGW 2 cut(s) 1617, 4429
PctI GAATGC 2 cut(s) 1361, 3529
PdmI GAANNNNTTC 6 cut(s) 1620, 2337, 2586, 2590, 4059, 4134
PflFI GACNNNGTC 1 cut(s) 4523
PflMI CCANNNNNTGG 1 cut(s) 3823
PfoI TCCNGGA 2 cut(s) 1762, 2557
PleI GAGTC 7 cut(s) 79, 151, 263, 1228, 2062, 2225, 3641
PmaCI CACGTG 1 cut(s) 4418
PmlI CACGTG 1 cut(s) 4418
PpsI GAGTC 7 cut(s) 79, 151, 263, 1228, 2062, 2225, 3641
Ppu21I YACGTR 4 cut(s) 1028, 2276, 3977, 4418
PscI ACATGT 2 cut(s) 2935, 3925
PshBI ATTAAT 2 cut(s) 888, 2807
PsiI TTATAA 1 cut(s) 4533
Psp124BI GAGCTC 1 cut(s) 3668
Psp1406I AACGTT 2 cut(s) 2857, 4472
Psp6I CCWGG 6 cut(s) 1359, 1762, 2071, 2557, 2722, 3346
PspCI CACGTG 1 cut(s) 4418
PspEI GGTNACC 2 cut(s) 791, 1772
PspFI CCCAGC 3 cut(s) 379, 755, 3816
PspGI CCWGG 6 cut(s) 1359, 1762, 2071, 2557, 2722, 3346
PspN4I GGNNCC 4 cut(s) 454, 2427, 4513, 4897
PspPI GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4511
PspXI VCTCGAGB 2 cut(s) 351, 3982
PstI CTGCAG 2 cut(s) 814, 2662
PstNI CAGNNNCTG 2 cut(s) 2989, 3823
PsuI RGATCY 9 cut(s) 175, 1682, 2176, 2425, 3360, 3736, 4157, 4191, 4901
PsyI GACNNNGTC 1 cut(s) 4523
PvuII CAGCTG 3 cut(s) 125, 379, 4127
RseI CAYNNNNRTG 9 cut(s) 642, 711, 873, 975, 1638, 1849, 2945, 4665, 4671
SacI GAGCTC 1 cut(s) 3668
SalI GTCGAC 1 cut(s) 4757
SapI GCTCTTC 2 cut(s) 1065, 4065
Sau96I GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4511
ScaI AGTACT 4 cut(s) 2316, 2762, 3158, 4395
SchI GAGTC 7 cut(s) 79, 152, 263, 1229, 2062, 2225, 3641
SduI GDGCHC 5 cut(s) 726, 880, 2281, 3668, 4795
SfaNI GCATC 7 cut(s) 853, 1391, 2404, 2854, 3440, 4627, 4649
SfcI CTRYAG 5 cut(s) 194, 810, 2284, 2658, 4918
Sfr274I CTCGAG 3 cut(s) 351, 2849, 3982
SfuI TTCGAA 1 cut(s) 2839
SinI GGWCC 4 cut(s) 226, 1895, 3167, 4074
SlaI CTCGAG 3 cut(s) 351, 2849, 3982
SmiMI CAYNNNNRTG 9 cut(s) 642, 711, 873, 975, 1638, 1849, 2945, 4665, 4671
SmlI CTYRAG 5 cut(s) 107, 351, 2111, 2849, 3982
SmoI CTYRAG 5 cut(s) 107, 351, 2111, 2849, 3982
SnaBI TACGTA 1 cut(s) 1028
SspI AATATT 5 cut(s) 853, 1863, 2346, 3495, 3780
SspMI CTAG 4 cut(s) 1647, 2226, 3689, 4344
SstI GAGCTC 1 cut(s) 3668
StyI CCWWGG 6 cut(s) 858, 1514, 2640, 2732, 4273, 4343
TaiI ACGT 7 cut(s) 1030, 2278, 2860, 3979, 4420, 4475, 4572
TaqII GACCGA 1 cut(s) 4091
TatI WGTACW 6 cut(s) 1463, 2314, 2760, 3156, 4381, 4393
TauI GCSGC 6 cut(s) 259, 325, 328, 331, 1870, 4586
TseFI GTSAC 7 cut(s) 771, 791, 1772, 2504, 2575, 3242, 4922
Tsp45I GTSAC 7 cut(s) 771, 791, 1772, 2504, 2575, 3242, 4922
TspGWI ACGGA 5 cut(s) 420, 448, 2523, 3058, 3629
Tth111I GACNNNGTC 1 cut(s) 4523
Van91I CCANNNNNTGG 1 cut(s) 3823
VpaK11BI GGWCC 4 cut(s) 226, 1895, 3167, 4074
VspI ATTAAT 2 cut(s) 888, 2807
XapI RAATTY 8 cut(s) 1205, 1616, 2337, 2479, 2586, 3849, 3958, 4652
XceI RCATGY 3 cut(s) 2939, 3929, 4670
XcmI CCANNNNNNNNNTGG 1 cut(s) 3893
XhoI CTCGAG 3 cut(s) 351, 2849, 3982
XmaJI CCTAGG 1 cut(s) 4343
XmiI GTMKAC 1 cut(s) 4758
XmnI GAANNNNTTC 6 cut(s) 1620, 2337, 2586, 2590, 4059, 4134
XspI CTAG 4 cut(s) 1647, 2226, 3689, 4344
ZrmI AGTACT 4 cut(s) 2316, 2762, 3158, 4395
Zsp2I ATGCAT 1 cut(s) 4642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.