Rh4DG153200

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002907
Physical Location & Seq
Forward (+)
30489518 .. 30497864
8347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG153200.1

Sequence Viewer

Length: 582 bp
ATGAAGACTCGTTCGCAGTTGGAAGTTCTTGAGCAAGCTTATGCAGACCGGGAAGCAGCAGAGGAAGGACTCTCTGGATGGAACAACTGGAGGTGGTTTCTAAGGAAATGGCGGGGAGTGAGCAGCGCGCTGCCGCCGCTGCAGCAGTTGGTAATAGAGGCTAGAGCTGTTGCTTTTGTGGAGGCGCAGCTGGGGGAGCCATTCAGGGAGGATGGGCCAATACTGGGCTTGGATTTTGATCCGTTGCCACCGGGTGCATTTGGTTCCTTCGTCATCAACGCCACGCTGTCCTCGTTGGCGCTGCCGCACATCATCGGCTTCGACACGTCCAGGGACCTGTGGCTGATGCTGGAGAGGCGGTTCACGAATATGCATTTTGGGATGATAGCACCTGAGAAACCATTTGCATTGTTGGCCTTGATTGTGGATGGGAATATCTGCCCTCGATTGCTGGTCTTGCAATGGCTAAGTACAACACAGTTAGATTTTCCAAGTTTCCACGAGGTTAGTTTTGGCGGTTCTGCATTTGCTGGAGAAATTCTAGAAGAAAATGAGAAATTGTCATTTCTGGCCTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

193

Amino Acids

21.65

Weight (kDa)

4.8

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 128
AciI CCGC 6 cut(s) 112, 134, 137, 305, 358, 516
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 537
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 224
AflIII ACRYGT 1 cut(s) 324
AjiI CACGTC 1 cut(s) 327
AjnI CCWGG 1 cut(s) 329
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 3 cut(s) 38, 167, 190
AluI AGCT 3 cut(s) 38, 167, 190
AlwI GGATC 1 cut(s) 233
AoxI GGCC 3 cut(s) 215, 414, 570
ApeKI GCWGC 7 cut(s) 56, 123, 130, 139, 142, 187, 301
ApoI RAATTY 1 cut(s) 537
AspLEI GCGC 4 cut(s) 128, 130, 187, 301
AspS9I GGNCC 2 cut(s) 215, 334
AsuC2I CCSGG 2 cut(s) 50, 252
AvaII GGWCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 7 cut(s) 68, 117, 126, 135, 154, 199, 288
BccI CCATC 3 cut(s) 72, 206, 422
BciT130I CCWGG 1 cut(s) 331
BcnI CCSGG 2 cut(s) 50, 252
BfaI CTAG 2 cut(s) 162, 542
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 302
Bme1390I CCNGG 3 cut(s) 50, 252, 331
Bme18I GGWCC 1 cut(s) 334
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 215, 334
BmiI GGNNCC 3 cut(s) 198, 265, 335
BmrFI CCNGG 3 cut(s) 50, 252, 331
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 336
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 3 cut(s) 109, 371, 552
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 2 cut(s) 50, 252
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 92, 228
Bse3DI GCAATG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 4 cut(s) 83, 217, 387, 433
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 2 cut(s) 92, 228
BsePI GCGCGC 1 cut(s) 126
BseXI GCAGC 7 cut(s) 68, 117, 126, 135, 154, 199, 288
BseYI CCCAGC 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 3 cut(s) 217, 416, 572
BsiSI CCGG 2 cut(s) 49, 251
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 3 cut(s) 217, 416, 572
Bsp143I GATC 1 cut(s) 238
BspACI CCGC 6 cut(s) 112, 134, 137, 305, 358, 516
BspANI GGCC 3 cut(s) 217, 416, 572
BspCNI CTCAG 1 cut(s) 385
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 3 cut(s) 198, 265, 335
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 467
BsrI ACTGG 2 cut(s) 92, 228
BssECI CCNNGG 1 cut(s) 330
BssHII GCGCGC 1 cut(s) 126
BssMI GATC 1 cut(s) 238
BssSI CACGAG 1 cut(s) 500
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 36, 128
BstDEI CTNAG 3 cut(s) 101, 393, 467
BstF5I GGATG 4 cut(s) 83, 217, 387, 433
BstFNI CGCG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 4 cut(s) 128, 130, 187, 301
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 7 cut(s) 136, 139, 142, 196, 355, 413, 457
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 3 cut(s) 48, 250, 329
BstSFI CTRYAG 1 cut(s) 140
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 7 cut(s) 68, 117, 126, 135, 154, 199, 288
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 3 cut(s) 217, 416, 572
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 4 cut(s) 83, 217, 387, 433
Cac8I GCNNGC 2 cut(s) 36, 128
CfoI GCGC 4 cut(s) 128, 130, 187, 301
Cfr13I GGNCC 2 cut(s) 215, 334
Csp6I GTAC 1 cut(s) 471
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 3 cut(s) 101, 393, 467
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
DraIII CACNNNGTG 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 329
EcoT22I ATGCAT 1 cut(s) 375
FaiI YATR 2 cut(s) 42, 371
FaqI GGGAC 1 cut(s) 347
FauI CCCGC 1 cut(s) 105
FokI GGATG 4 cut(s) 90, 224, 394, 440
FspBI CTAG 2 cut(s) 162, 542
GlaI GCGC 4 cut(s) 127, 129, 186, 300
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 3 cut(s) 109, 371, 552
HaeII RGCGCY 1 cut(s) 302
HaeIII GGCC 3 cut(s) 217, 416, 572
HapII CCGG 2 cut(s) 49, 251
HhaI GCGC 4 cut(s) 128, 130, 187, 301
Hin6I GCGC 4 cut(s) 126, 128, 185, 299
HinP1I GCGC 4 cut(s) 126, 128, 185, 299
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 2 cut(s) 7, 69
HpaII CCGG 2 cut(s) 49, 251
Hpy166II GTNNAC 1 cut(s) 363
Hpy188III TCNNGA 4 cut(s) 29, 75, 364, 542
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 2 cut(s) 59, 277
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 7 cut(s) 44, 142, 257, 373, 407, 460, 524
HpyF10VI GCNNNNNNNGC 7 cut(s) 136, 139, 142, 196, 355, 413, 457
HpyF3I CTNAG 3 cut(s) 101, 393, 467
HpySE526I ACGT 1 cut(s) 326
HspAI GCGC 4 cut(s) 126, 128, 185, 299
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 7 cut(s) 68, 117, 126, 135, 154, 199, 288
LweI GCATC 1 cut(s) 336
MaeI CTAG 2 cut(s) 162, 542
MaeII ACGT 1 cut(s) 326
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 16, 557
MluCI AATT 2 cut(s) 537, 557
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 9 cut(s) 55, 84, 151, 175, 202, 301, 348, 453, 496
Mph1103I ATGCAT 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 2 cut(s) 139, 190
MspI CCGG 2 cut(s) 49, 251
MspR9I CCNGG 3 cut(s) 50, 252, 331
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 7 cut(s) 136, 139, 142, 196, 355, 413, 457
NciI CCSGG 2 cut(s) 50, 252
NdeII GATC 1 cut(s) 238
NlaIV GGNNCC 3 cut(s) 198, 265, 335
NsiI ATGCAT 1 cut(s) 375
PauI GCGCGC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 3 cut(s) 198, 265, 335
PspPI GGNCC 2 cut(s) 215, 334
PspPPI RGGWCCY 1 cut(s) 334
PstI CTGCAG 1 cut(s) 144
PteI GCGCGC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 368
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 215, 334
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 3 cut(s) 50, 252, 331
SetI ASST 8 cut(s) 40, 95, 169, 192, 329, 339, 394, 507
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 2 cut(s) 537, 557
SsiI CCGC 6 cut(s) 112, 134, 137, 305, 358, 516
SspMI CTAG 2 cut(s) 162, 542
StyD4I CCNGG 3 cut(s) 48, 250, 329
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 1 cut(s) 329
TaqI TCGA 2 cut(s) 321, 445
TasI AATT 2 cut(s) 537, 557
TatI WGTACW 1 cut(s) 470
TauI GCSGC 3 cut(s) 136, 139, 307
TseI GCWGC 7 cut(s) 56, 123, 130, 139, 142, 187, 301
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 1 cut(s) 537
XbaI TCTAGA 1 cut(s) 541
XspI CTAG 2 cut(s) 162, 542
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.