Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002907

Physical Location & Seq

Genomic Coordinates Reverse (-)

8746056 .. 8746439

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG059500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGGAATCTCTTTTATTCGTGTCACCATGGAGCTATGGAGCTGTGGACGTCCCCGGAGCGGTCGCAATCTCGTGCACGGTACGCTTTATGTATCAACGAGAGTATGACCAATCCGGTGGAATACGTTGCAGCAGCGAATCCAATACACCTCCACCAAGGTTGTGTTCAGAACCTTGTGATGGCACTCCAAAGTGTCACCAAACCTCCGAATCATGTGAAAACAAGGCTCCAATGCCTCTTTTCTTCCACAAAGACTCACTGGTTCCAAGAATCAGCAAGGTCACCGCCAAGAAGCCTCCTACCTCCTGCCTTCCTTTCCACCGCAACAAAACAAATGGCCTTGCACCACTTGCAAAACAAGCCACACAAAGAACAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.99

Weight (kDa)

8.73

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44180 AT5G44180 AT5G44180
fragaria_vesca	FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700
rosa_chinensis	RchiOBHm_Chr2g0127081 RchiOBHm_Chr2g0127091
rosa_laevigata	RLG00000018980 RLG00000023032
rosa_multiflora	Rmu_sc0000023.1_g000012 Rmu_sc0008093.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026470 Rroxscaffold_2G00115760 Rroxscaffold_2G00116210 Rroxscaffold_5G00354400
rosa_rugosa	Rorug02G0277500 Rorug06G0129600 Rorug07G0322700
rosa_samantha	Rh1BG059500 Rh2AG328000 Rh2BG338000 Rh2CG315100 Rh2DG355100 Rh3DG168700 Rh4AG158500 Rh4DG153200 Rh7AG477100
rosa_wichuraiana	Rw2G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	3 cut(s)	62, 288, 325
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	61, 182
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AluBI	AGCT	2 cut(s)	36, 44
AluI	AGCT	2 cut(s)	36, 44
Alw21I	GWGCWC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	132, 135
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	3 cut(s)	18, 191, 277
BaeGI	GKGCMC	1 cut(s)	80
BauI	CACGAG	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	144, 147
BccI	CCATC	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	57
BfaI	CTAG	1 cut(s)	382
BisI	GCNGC	2 cut(s)	133, 136
BlsI	GCNGC	2 cut(s)	134, 137
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	231, 267
BmrFI	CCNGG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	57
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	29, 55, 158
BsaWI	WCCGGW	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 182
Bse1I	ACTGG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	29, 55, 158
BseLI	CCNNNNNNNGG	2 cut(s)	61, 182
BseNI	ACTGG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	144, 147
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	57, 117
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	2 cut(s)	61, 182
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	3 cut(s)	62, 288, 325
BspANI	GGCC	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	231, 267
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	29, 55, 158
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	2 cut(s)	29, 158
Bst2BI	CACGAG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	29
BstEII	GGTNACC	1 cut(s)	283
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 353, 362
BstPI	GGTNACC	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	55
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	144, 147
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	342
BtgI	CCRYGG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	83
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	2 cut(s)	30, 216
CviJI	RGCY	6 cut(s)	36, 44, 230, 298, 342, 365
CviKI_1	RGCY	6 cut(s)	36, 44, 230, 298, 342, 365
CviQI	GTAC	1 cut(s)	83
Eco130I	CCWWGG	2 cut(s)	29, 158
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	29, 158
ErhI	CCWWGG	2 cut(s)	29, 158
FaeI	CATG	2 cut(s)	33, 219
FaiI	YATR	5 cut(s)	31, 39, 92, 108, 217
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	2 cut(s)	29, 215
Fnu4HI	GCNGC	2 cut(s)	133, 136
Fsp4HI	GCNGC	2 cut(s)	133, 136
FspBI	CTAG	1 cut(s)	382
GluI	GCNGC	2 cut(s)	133, 136
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	2 cut(s)	57, 117
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	33, 219
HinfI	GANTC	5 cut(s)	8, 140, 212, 257, 273
HpaII	CCGG	2 cut(s)	57, 117
HphI	GGTGA	3 cut(s)	18, 191, 277
Hpy166II	GTNNAC	2 cut(s)	49, 78
Hpy188I	TCNGA	2 cut(s)	172, 211
Hpy8I	GTNNAC	2 cut(s)	49, 78
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	2 cut(s)	51, 127
HpyCH4V	TGCA	5 cut(s)	4, 78, 132, 347, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 353, 362
HpySE526I	ACGT	2 cut(s)	51, 127
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	33, 219
LmnI	GCTCC	4 cut(s)	33, 41, 59, 235
LpnPI	CCDG	4 cut(s)	70, 130, 248, 322
Lsp1109I	GCAGC	2 cut(s)	144, 147
MaeI	CTAG	1 cut(s)	382
MaeII	ACGT	2 cut(s)	51, 127
MaeIII	GTNAC	3 cut(s)	24, 197, 283
MbiI	CCGCTC	1 cut(s)	62
MboII	GAAGA	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	5 cut(s)	162, 217, 249, 309, 316
MspI	CCGG	2 cut(s)	57, 117
MspR9I	CCNGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	84, 353, 362
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	29
NlaIII	CATG	2 cut(s)	33, 219
NlaIV	GGNNCC	2 cut(s)	231, 267
NmuCI	GTSAC	3 cut(s)	24, 197, 283
PfeI	GAWTC	4 cut(s)	8, 140, 212, 273
PkrI	GCNGC	2 cut(s)	134, 137
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PspEI	GGTNACC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	231, 267
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	133, 136
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	80
SsiI	CCGC	3 cut(s)	62, 288, 325
SspMI	CTAG	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	29, 158
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	2 cut(s)	54, 130
TfiI	GAWTC	4 cut(s)	8, 140, 212, 273
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	3 cut(s)	24, 197, 283
TseI	GCWGC	2 cut(s)	132, 135
Tsp45I	GTSAC	3 cut(s)	24, 197, 283
TspRI	CASTG	1 cut(s)	267
VneI	GTGCAC	1 cut(s)	76
XspI	CTAG	1 cut(s)	382
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.