Rmu_sc0008093.1_g000001

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008093.1
OG0002907
Physical Location & Seq
Forward (+)
2441 .. 16539
14099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008093.1_g000001.1.cds

Sequence Viewer

Length: 5181 bp
atggagactggctcggagggagagaagacgagagctgaggctcaggctcaggaaggggagatcagaaccaagcgcaaaatgaagactcgttcgcagttggaagttcttgagcaagcttatgcagctgagcaatacccgtcggagtcggtgagagctgagctgtcgttgaaattggatctttccgatcggcaactacagatgtggttctgccaccggcgattgaaggaccgtaagccgacgccgacgaccgggaagcggcagaggaaggactctccggctggaacgactggagtggtttctgaggaaatggcggggagtgagccgccgccgcagcagttgataatagaggctcgagctgttgcttttgtggaggcgcagctgggagagccattcagggaggacgggccgatactgggcttggagtttgatccgttgccaccgggcgcatttggttcctccgtaggagtggcaactgttgggcagcagaagcaatcgggatggccatattctgcaaatatatatgagcaatctaatgctaaaccaattaagggtgcttcaaggactgtccatgaataccagtttcttccagaaaagccaactgttaggacagacacttatgaaagggctgccccatctcaccactatggttcacccactgaatctcgccatgcaaggattccattatctactgtgtcctcgttcattcatggtaatgaacaagtgcccactgtatatcgatttcaaagccagatggctgggctaaatcttttgtcacagcaaggcagggctggtcacctcttgccatctgctgcagaagaatatggcaatgttcatggaaagaacttcacgaatattaccatggatgctcattttagtgctcacccaattaatcaactgaacaatccttttataccatttgccagaagtgtggctcatgacgaggatgatgttttaagattggaaaggaagcacaagagtgaagaagcaagaataatgcgggaagttgaagcccatgagaaaaggatacgtaaagagcttgaaaaacaagatatcctgagacgaaagagagaagagcaaataaggaaagaaatggagaggattgatcgggagaggaggaaggaagaagaaaggctattgcgtgaaaagcagagagaggaggagagatacctaagggagcaaaggcgtgaactggagcgaaaggaaaaattcttacagaaggagtcaataagagcggagaaaatgagacaaaaagaagaattacgcagagagaaagaggcagcaaggcttaaagctgctaatgagagagctattgctcgtaaaaatgctaaagaatcaatggaactcattgaggatgaatgcctggaactcatggagttagctgcatcaagcaaggagcttccttccatgttgtctcttgattatgaaaccttgcaaaatcttgaatcatttagagatatgcggagtacattcccacccaaatctgtgcagttgaaaaaaccttttggtattcaaccttggatagattcagaggagaacattggcaatcttcttatggcatggagattcttaattacttttgtggatgttcttgggctctggccatttactctcgatgaattcgttcaagcttttcatgactatgattctaggttgttgggtgagatacatatttcacttctaagatccatcattaaagacattgaagatgttgcaagaataccctctatgggggtgggagctaatcagaactgcgctgcaaatcctggaggcggtcaccctcaaattgtagaaggggcatatgcttggggatttgacatcaaaagctggaagtgcaacttaaatccactgacatggccagaaatattgcggcaattttctgtatcagcaggatttggaccgcaactgaagaagagggatgttgaaccagcttatcttcatgaggacaatgagggtaatgatgtcaaggatataatttccaatttacgcagtggagtagctgtaaaaaatgccttcgctattatgcaagaaaggggtttttctaaccctcgcaaatcaaggcattgcttgactcctggcactgttaagttcgcagcatttcatgttctttctcttgaggggagcaagggccttaacatattagaagttgcagacaggattcagaaatcaggacttcgggatctcacaacaagcaagacaccagaagcctcgatagctgctgctttgtctagggactcaaaactatttgagagaactgcaccttctacttactgtgtacgtgctccctacagaaaggacacaagtgattccgaggcagtactttcggcagccagagaaagaattcaaatattcaatagtaggatttttgatgttgaaggagctgatgaagctgaaagagacgaagaatctgaaagtgatgcagtacaggatcctgagtttgatgatttaggcactgaaataaatccaaagatagtagctcagaattctgaagaagcaagaaaagtcagtgacggaatatctttggaaagtggaaatggaagttacgaggttagtaaagctccaggagaccttaggaatgtcacagaaggaattccttcaatcaattctgaagcgtccatcaaggttgaagacgctggttgttccttggattctgttgacgctgcaggaatctgcaacaatgtagctaatcatgatcaagaagatacagagattgatgatagcaaccctggtgagccatgggttcaaggacttacagaaggggagtactctgatcttagtgttgaggagcgcctcaatgcacttgctgcattaattggtgtggcaatagaaggaaactcgattcgaattgttctcgaggaacgtttagatgctgcaaatgctttaaagaagcaaatgtgggcagtggcgcaagttgataaacggcgtctaaaagaagaacatgtcatcaaaatgcaatatacccctttcattgggaacaagactgagcagagcctgacaattccttcagaaaataggcaaagtccatctcctaccgttgatgagaaaaacattgagacgacggtgaagctttccgtcctgcaagagcagatggttgatccacaaaatgagcaaaattatatcaacagttttccttctgtacgaaacctccaaatgcaggagtactctgttggtccagacaatcacccatttcagcaacccggtcttattgctgataagtcgcacaaacaattaaaatcttatattggtcacaaagcagaggagatgtatgtttatcgatcattgcctcttggtcaggatcgtaggcataatagatactggcagtttattacatctgcctctcgaaatgatcctggttgtggcaggatctttgttgagctgcatgacggtcgttggaggcttattgattctgaagagggctttgatggtcttttggcatctttggatgtgcgtgggtatagggaatcccatttgcagacaatgttgcagaagactgaaatattcttcaaggaaactgttagaagaaacaagttgcattctaaccgggggaggcatatcaaagacactgctaaaacagaagatgttgaaatgccttctggttatgattgcagtggtggtacggatagccctaccagctctgtttctgttgctgactccgatatgttggagagctcaatgactttttcaattgagctaggaaagaacgaaactgagaaaactggtgctttaaacagatatcaagatctggagaggtggattttgaaagaaagtgttggttcttcaatattatgtgctgacaaaaatggggaaaaaaggtgtccccagctactggacatctgcaattcttgtcgtggaattttttattttgaagagaatcactgtcattcttgccatagaacttttggcaagggcgaaatagatttttcacaacatgtggtactgtgtaaagagaaactgaagttgaattctgattgtaatttacgtggctcgagttcttctccccttaggatcaggttgctgaaggtgctattagctttgactgaggtttctgttccattagaagctcttcaacctctttggaccgacatgaaccgtaaatcttggggtagaaagttacattcctcgtcaacagctgaagaccttctccaggttctggcatcgttggagagtgctgtaaagatagaatatttatcttcaaactttgagactaccggtgagctgctatattcctcaaatgaaaaaggacgtgttactagcaattcttcttctcctgatagcgttgctgtgcttccatgggtaccacttacaacagctgctgtggctcttaggctcatggagtttgatgcggccatctcaaacatgctacagcagaagctggtgactcagaaggacaaggaatctggggattttaaaaagcttccaacaagatctgctgtcatgaaaagttccaagaatgaggagatctcaggaactccacatcaatctgaagattctaaagaaggccactgggagtatctggggagtggacttaccggctctggccatggacgaggccgtggtcgaactggtggtaggcgagtgccaaaaaaggcaattggtttaaggggcaatcctaggaagaagagtagagttgcagccaaagataaattagtacaggtgcaagtactgaaatggaaaggcagaccacgtggacgaggagggcgaaagcgtggaaatcggagcattagaggcaaggagacaacgtttaacaggataattaagattggtggggagagaactggccccaaagacagtgtctattataaatcaccagatgacttggttgaggagaattggaacgtaggtgaaactgcggcagaaaatgcaagcggttctggaaggtcagagtatgaagtggaaaatggggatgcatcaggagatgaatttgatcatgtgcatgtggatgactatgccggtggcttcaatggcaagtctgatgacttaatggagggaggcgaatataacatggagggtgacgaagatgatgtcgacgatgaatgtgaaggagcacaggattcggattttgatggtgcaagatatatcaatggagggtgggatgaagaggaacacatagctgatgatggacagcaagacatggaacttggtgaaggtaccagatcttcgtcttcagactatagtgacttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

1726

Amino Acids

193.88

Weight (kDa)

5.54

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 4797
Acc65I GGTACC 2 cut(s) 4291, 5144
AccB1I GGYRCC 2 cut(s) 4291, 5144
AccB7I CCANNNNNTGG 2 cut(s) 3823, 4147
AccBSI CCGCTC 1 cut(s) 1232
AccI GTMKAC 1 cut(s) 5022
AclI AACGTT 2 cut(s) 2857, 4736
AcoI YGGCCR 5 cut(s) 500, 1598, 1853, 4341, 4534
AcsI RAATTY 8 cut(s) 1205, 1616, 2337, 2479, 2586, 3849, 3958, 4916
AcvI CACGTG 1 cut(s) 4682
AcyI GRCGYC 2 cut(s) 239, 2920
AflIII ACRYGT 3 cut(s) 2935, 3925, 4240
AgeI ACCGGT 1 cut(s) 4205
AjiI CACGTC 1 cut(s) 4241
AjnI CCWGG 7 cut(s) 1359, 1762, 2071, 2557, 2722, 3346, 4140
AleI CACNNNNGTG 1 cut(s) 975
Alw21I GWGCWC 4 cut(s) 880, 2281, 3668, 5044
Alw26I GTCTC 8 cut(s) 1051, 1237, 1416, 2388, 2556, 3044, 4193, 4724
AlwNI CAGNNNCTG 5 cut(s) 2989, 3823, 4147, 4310, 4369
Ama87I CYCGRG 3 cut(s) 351, 2849, 3982
ApoI RAATTY 8 cut(s) 1205, 1616, 2337, 2479, 2586, 3849, 3958, 4916
ArsI GACNNNNNNTTYG 4 cut(s) 4773, 4805, 5004, 5036
AseI ATTAAT 2 cut(s) 888, 2807
AsiGI ACCGGT 1 cut(s) 4205
Asp700I GAANNNNTTC 6 cut(s) 1620, 2337, 2586, 2590, 4059, 4134
Asp718I GGTACC 2 cut(s) 4291, 5144
AspA2I CCTAGG 1 cut(s) 4607
AspLEI GCGC 6 cut(s) 75, 376, 446, 1754, 2787, 2905
AspS9I GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4775
AsuC2I CCSGG 4 cut(s) 250, 441, 3195, 3539
AsuII TTCGAA 1 cut(s) 2839
AvaI CYCGRG 3 cut(s) 351, 2849, 3982
AvaII GGWCC 4 cut(s) 226, 1895, 3167, 4074
AvrII CCTAGG 1 cut(s) 4607
AxyI CCTNAGG 3 cut(s) 1169, 2567, 3998
BaeGI GKGCMC 1 cut(s) 726
BalI TGGCCA 4 cut(s) 502, 1600, 1855, 4536
BamHI GGATCC 1 cut(s) 2425
BanI GGYRCC 2 cut(s) 4291, 5144
BanII GRGCYC 2 cut(s) 1596, 3668
BarI GAAGNNNNNNTAC 2 cut(s) 5137, 5169
BbrPI CACGTG 1 cut(s) 4682
BbsI GAAGAC 6 cut(s) 32, 89, 2631, 3491, 4137, 5151
Bbv12I GWGCWC 4 cut(s) 880, 2281, 3668, 5044
BbvCI CCTCAGC 1 cut(s) 36
BceAI ACGGC 2 cut(s) 2933, 4533
BcgI CGANNNNNNTGC 6 cut(s) 2301, 2335, 3365, 3399, 5031, 5065
BciT130I CCWGG 7 cut(s) 1361, 1764, 2073, 2559, 2724, 3348, 4142
BciVI GTATCC 1 cut(s) 1017
BclI TGATCA 2 cut(s) 2689, 4921
BcnI CCSGG 4 cut(s) 250, 441, 3195, 3539
BcoDI GTCTC 8 cut(s) 1051, 1237, 1416, 2388, 2556, 3044, 4193, 4724
BfaI CTAG 5 cut(s) 1647, 2226, 3689, 4248, 4608
BfmI CTRYAG 6 cut(s) 194, 810, 2284, 2658, 4358, 5167
BfoI RGCGCY 1 cut(s) 2788
BfuI GTATCC 1 cut(s) 1017
BglII AGATCT 4 cut(s) 3736, 4421, 4455, 5150
BlnI CCTAGG 1 cut(s) 4607
BlpI GCTNAGC 2 cut(s) 126, 156
BmcAI AGTACT 4 cut(s) 2316, 2762, 3158, 4659
Bme18I GGWCC 4 cut(s) 226, 1895, 3167, 4074
BmeT110I CYCGRG 3 cut(s) 351, 2849, 3982
BmgBI CACGTC 1 cut(s) 4241
BmgT120I GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4775
BmiI GGNNCC 5 cut(s) 454, 2427, 4293, 4777, 5146
BmrI ACTGGG 2 cut(s) 422, 4510
BmsI GCATC 9 cut(s) 853, 1391, 2404, 2854, 3440, 4160, 4327, 4891, 4913
BmuI ACTGGG 2 cut(s) 422, 4510
BpiI GAAGAC 6 cut(s) 32, 89, 2631, 3491, 4137, 5151
BplI GAGNNNNNCTC 5 cut(s) 28, 3976, 4008, 4442, 4474
BpmI CTGGAG 6 cut(s) 309, 1211, 1785, 2541, 3761, 4124
Bpu10I CCTNAGC 3 cut(s) 36, 42, 48
Bpu1102I GCTNAGC 2 cut(s) 126, 156
Bpu14I TTCGAA 1 cut(s) 2839
BpuEI CTTGAG 2 cut(s) 128, 2132
BpuMI CCSGG 4 cut(s) 250, 441, 3195, 3539
Bsa29I ATCGAT 2 cut(s) 736, 3271
BsaAI YACGTR 4 cut(s) 1028, 2276, 3977, 4682
BsaHI GRCGYC 2 cut(s) 239, 2920
BsaI GGTCTC 1 cut(s) 2556
BsaWI WCCGGW 1 cut(s) 4205
BsaXI ACNNNNNCTCC 6 cut(s) 1983, 2013, 3126, 3156, 4721, 4751
Bse118I RCCGGY 4 cut(s) 213, 4205, 4526, 4946
Bse21I CCTNAGG 3 cut(s) 1169, 2567, 3998
Bse3DI GCAATG 3 cut(s) 832, 2059, 3275
BseBI CCWGG 7 cut(s) 1361, 1764, 2073, 2559, 2724, 3348, 4142
BseCI ATCGAT 2 cut(s) 736, 3271
BseMI GCAATG 3 cut(s) 832, 2059, 3275
BseRI GAGGAG 9 cut(s) 1126, 1169, 1172, 1544, 2795, 3269, 4466, 4704, 4835
BseSI GKGCMC 1 cut(s) 726
BseYI CCCAGC 3 cut(s) 379, 755, 3816
BsgI GTGCAG 2 cut(s) 1505, 2238
Bsh1285I CGRYCG 3 cut(s) 187, 249, 3385
BshNI GGYRCC 2 cut(s) 4291, 5144
BshTI ACCGGT 1 cut(s) 4205
BshVI ATCGAT 2 cut(s) 736, 3271
BsiEI CGRYCG 3 cut(s) 187, 249, 3385
BsiHKAI GWGCWC 4 cut(s) 880, 2281, 3668, 5044
BsiHKCI CYCGRG 3 cut(s) 351, 2849, 3982
BsiSI CCGG 9 cut(s) 214, 249, 275, 440, 3195, 3538, 4206, 4527, 4947
BslFI GGGAC 2 cut(s) 2243, 3798
BsmAI GTCTC 8 cut(s) 1051, 1237, 1416, 2388, 2556, 3044, 4193, 4724
BsmBI CGTCTC 3 cut(s) 1051, 2388, 3044
BsmFI GGGAC 2 cut(s) 2243, 3798
BsmI GAATGC 2 cut(s) 1361, 3529
Bso31I GGTCTC 1 cut(s) 2556
BsoBI CYCGRG 3 cut(s) 351, 2849, 3982
Bsp119I TTCGAA 1 cut(s) 2839
Bsp1286I GDGCHC 6 cut(s) 726, 880, 1596, 2281, 3668, 5044
Bsp1720I GCTNAGC 2 cut(s) 126, 156
Bsp19I CCATGG 4 cut(s) 858, 2732, 4286, 4537
BspDI ATCGAT 2 cut(s) 736, 3271
BspHI TCATGA 5 cut(s) 934, 1633, 1936, 2686, 4431
BspLI GGNNCC 5 cut(s) 454, 2427, 4293, 4777, 5146
BspMAI CTGCAG 2 cut(s) 814, 2662
BspQI GCTCTTC 2 cut(s) 1065, 4065
BspT104I TTCGAA 1 cut(s) 2839
BspT107I GGYRCC 2 cut(s) 4291, 5144
BspTNI GGTCTC 1 cut(s) 2556
BsrBI CCGCTC 1 cut(s) 1232
BsrDI GCAATG 3 cut(s) 832, 2059, 3275
BsrFI RCCGGY 4 cut(s) 213, 4205, 4526, 4946
BssAI RCCGGY 4 cut(s) 213, 4205, 4526, 4946
BssNI GRCGYC 2 cut(s) 239, 2920
BssT1I CCWWGG 7 cut(s) 858, 1514, 2640, 2732, 4286, 4537, 4607
Bst2UI CCWGG 7 cut(s) 1361, 1764, 2073, 2559, 2724, 3348, 4142
Bst6I CTCTTC 7 cut(s) 1065, 1904, 3402, 3858, 4065, 4610, 5088
BstACI GRCGYC 2 cut(s) 239, 2920
BstAPI GCANNNNNTGC 2 cut(s) 2801, 4856
BstBAI YACGTR 4 cut(s) 1028, 2276, 3977, 4682
BstBI TTCGAA 1 cut(s) 2839
BstC8I GCNNGC 2 cut(s) 114, 4861
BstDSI CCRYGG 5 cut(s) 858, 2732, 4286, 4537, 4549
BstEII GGTNACC 2 cut(s) 791, 1772
BstENI CCTNNNNNAGG 1 cut(s) 4139
BstH2I RGCGCY 1 cut(s) 2788
BstHHI GCGC 6 cut(s) 75, 376, 446, 1754, 2787, 2905
BstMAI GTCTC 8 cut(s) 1051, 1237, 1416, 2388, 2556, 3044, 4193, 4724
BstMCI CGRYCG 3 cut(s) 187, 249, 3385
BstNI CCWGG 7 cut(s) 1361, 1764, 2073, 2559, 2724, 3348, 4142
BstNSI RCATGY 4 cut(s) 2939, 3929, 4357, 4934
BstPI GGTNACC 2 cut(s) 791, 1772
BstSFI CTRYAG 6 cut(s) 194, 810, 2284, 2658, 4358, 5167
BstSLI GKGCMC 1 cut(s) 726
BstSNI TACGTA 1 cut(s) 1028
BstV2I GAAGAC 6 cut(s) 32, 89, 2631, 3491, 4137, 5151
BstX2I RGATCY 9 cut(s) 175, 1682, 2176, 2425, 3360, 3736, 4421, 4455, 5150
BstXI CCANNNNNNTGG 3 cut(s) 755, 928, 1851
BstYI RGATCY 9 cut(s) 175, 1682, 2176, 2425, 3360, 3736, 4421, 4455, 5150
Bsu15I ATCGAT 2 cut(s) 736, 3271
Bsu36I CCTNAGG 3 cut(s) 1169, 2567, 3998
BsuI GTATCC 1 cut(s) 1017
BsuTUI ATCGAT 2 cut(s) 736, 3271
BtgI CCRYGG 5 cut(s) 858, 2732, 4286, 4537, 4549
BtrI CACGTC 1 cut(s) 4241
BtsI GCAGTG 4 cut(s) 1993, 2904, 3558, 3610
Cac8I GCNNGC 2 cut(s) 114, 4861
CaiI CAGNNNCTG 5 cut(s) 2989, 3823, 4147, 4310, 4369
CciI TCATGA 5 cut(s) 934, 1633, 1936, 2686, 4431
CfoI GCGC 6 cut(s) 75, 376, 446, 1754, 2787, 2905
Cfr10I RCCGGY 4 cut(s) 213, 4205, 4526, 4946
Cfr13I GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4775
ClaI ATCGAT 2 cut(s) 736, 3271
CseI GACGC 5 cut(s) 247, 2598, 2636, 2663, 2909
CspAI ACCGGT 1 cut(s) 4205
DraI TTTAAA 3 cut(s) 2880, 3723, 4405
EaeI YGGCCR 5 cut(s) 500, 1598, 1853, 4341, 4534
Eam1104I CTCTTC 7 cut(s) 1065, 1904, 3402, 3858, 4065, 4610, 5088
EarI CTCTTC 7 cut(s) 1065, 1904, 3402, 3858, 4065, 4610, 5088
Ecl136II GAGCTC 1 cut(s) 3666
Eco105I TACGTA 1 cut(s) 1028
Eco130I CCWWGG 7 cut(s) 858, 1514, 2640, 2732, 4286, 4537, 4607
Eco24I GRGCYC 2 cut(s) 1596, 3668
Eco31I GGTCTC 1 cut(s) 2556
Eco32I GATATC 2 cut(s) 1051, 3731
Eco47I GGWCC 4 cut(s) 226, 1895, 3167, 4074
Eco53kI GAGCTC 1 cut(s) 3666
Eco72I CACGTG 1 cut(s) 4682
Eco81I CCTNAGG 3 cut(s) 1169, 2567, 3998
Eco88I CYCGRG 3 cut(s) 351, 2849, 3982
Eco91I GGTNACC 2 cut(s) 791, 1772
EcoICRI GAGCTC 1 cut(s) 3666
EcoNI CCTNNNNNAGG 1 cut(s) 4139
EcoO109I RGGNCCY 1 cut(s) 2125
EcoO65I GGTNACC 2 cut(s) 791, 1772
EcoRI GAATTC 5 cut(s) 1616, 2337, 2479, 2586, 3958
EcoRII CCWGG 7 cut(s) 1359, 1762, 2071, 2557, 2722, 3346, 4140
EcoRV GATATC 2 cut(s) 1051, 3731
EcoT14I CCWWGG 7 cut(s) 858, 1514, 2640, 2732, 4286, 4537, 4607
EcoT22I ATGCAT 1 cut(s) 4906
EcoT38I GRGCYC 2 cut(s) 1596, 3668
ErhI CCWWGG 7 cut(s) 858, 1514, 2640, 2732, 4286, 4537, 4607
Esp3I CGTCTC 3 cut(s) 1051, 2388, 3044
FalI AAGNNNNNCTT 2 cut(s) 1820, 1852
FaqI GGGAC 2 cut(s) 2243, 3798
FauI CCCGC 2 cut(s) 304, 990
FauNDI CATATG 1 cut(s) 1798
FbaI TGATCA 2 cut(s) 2689, 4921
FblI GTMKAC 1 cut(s) 5022
FriOI GRGCYC 2 cut(s) 1596, 3668
FspBI CTAG 5 cut(s) 1647, 2226, 3689, 4248, 4608
GlaI GCGC 6 cut(s) 74, 375, 445, 1753, 2786, 2904
GsaI CCCAGC 3 cut(s) 383, 759, 3820
GsuI CTGGAG 6 cut(s) 309, 1211, 1785, 2541, 3761, 4124
HaeII RGCGCY 1 cut(s) 2788
HapII CCGG 9 cut(s) 214, 249, 275, 440, 3195, 3538, 4206, 4527, 4947
HgaI GACGC 5 cut(s) 247, 2598, 2636, 2663, 2909
HhaI GCGC 6 cut(s) 75, 376, 446, 1754, 2787, 2905
Hin1I GRCGYC 2 cut(s) 239, 2920
Hin6I GCGC 6 cut(s) 73, 374, 444, 1752, 2785, 2903
HinP1I GCGC 6 cut(s) 73, 374, 444, 1752, 2785, 2903
HincII GTYRAC 3 cut(s) 2653, 4122, 5023
HindII GTYRAC 3 cut(s) 2653, 4122, 5023
HindIII AAGCTT 4 cut(s) 114, 1626, 3062, 4409
HpaII CCGG 9 cut(s) 214, 249, 275, 440, 3195, 3538, 4206, 4527, 4947
Hpy166II GTNNAC 8 cut(s) 650, 1187, 2273, 2653, 4122, 4520, 4685, 5023
Hpy8I GTNNAC 8 cut(s) 650, 1187, 2273, 2653, 4122, 4520, 4685, 5023
Hpy99I CGWCG 5 cut(s) 142, 241, 247, 3058, 5027
HpyCH4IV ACGT 8 cut(s) 1027, 2275, 2857, 3976, 4240, 4681, 4736, 4833
HpySE526I ACGT 8 cut(s) 1027, 2275, 2857, 3976, 4240, 4681, 4736, 4833
Hsp92I GRCGYC 2 cut(s) 239, 2920
HspAI GCGC 6 cut(s) 73, 374, 444, 1752, 2785, 2903
KpnI GGTACC 2 cut(s) 4295, 5148
Ksp22I TGATCA 2 cut(s) 2689, 4921
LguI GCTCTTC 2 cut(s) 1065, 4065
LweI GCATC 9 cut(s) 853, 1391, 2404, 2854, 3440, 4160, 4327, 4891, 4913
MaeI CTAG 5 cut(s) 1647, 2226, 3689, 4248, 4608
MaeII ACGT 8 cut(s) 1027, 2275, 2857, 3976, 4240, 4681, 4736, 4833
MbiI CCGCTC 1 cut(s) 1232
MfeI CAATTG 2 cut(s) 3681, 4587
MflI RGATCY 9 cut(s) 175, 1682, 2176, 2425, 3360, 3736, 4421, 4455, 5150
MhlI GDGCHC 6 cut(s) 726, 880, 1596, 2281, 3668, 5044
MlsI TGGCCA 4 cut(s) 502, 1600, 1855, 4536
MluNI TGGCCA 4 cut(s) 502, 1600, 1855, 4536
MlyI GAGTC 8 cut(s) 79, 152, 263, 1229, 2062, 2225, 3641, 4369
MmeI TCCRAC 6 cut(s) 78, 120, 3368, 3639, 4137, 4439
Mox20I TGGCCA 4 cut(s) 502, 1600, 1855, 4536
Mph1103I ATGCAT 1 cut(s) 4906
MroXI GAANNNNTTC 6 cut(s) 1620, 2337, 2586, 2590, 4059, 4134
MscI TGGCCA 4 cut(s) 502, 1600, 1855, 4536
MslI CAYNNNNRTG 9 cut(s) 642, 711, 873, 975, 1638, 1849, 2945, 4929, 4935
Msp20I TGGCCA 4 cut(s) 502, 1600, 1855, 4536
MspA1I CMGCKG 4 cut(s) 125, 379, 4127, 4307
MspI CCGG 9 cut(s) 214, 249, 275, 440, 3195, 3538, 4206, 4527, 4947
MunI CAATTG 2 cut(s) 3681, 4587
Mva1269I GAATGC 2 cut(s) 1361, 3529
MvaI CCWGG 7 cut(s) 1361, 1764, 2073, 2559, 2724, 3348, 4142
NciI CCSGG 4 cut(s) 250, 441, 3195, 3539
NcoI CCATGG 4 cut(s) 858, 2732, 4286, 4537
NdeI CATATG 1 cut(s) 1798
NlaIV GGNNCC 5 cut(s) 454, 2427, 4293, 4777, 5146
NmuCI GTSAC 9 cut(s) 771, 791, 1772, 2504, 2575, 3242, 4372, 5006, 5171
NsiI ATGCAT 1 cut(s) 4906
NspI RCATGY 4 cut(s) 2939, 3929, 4357, 4934
NspV TTCGAA 1 cut(s) 2839
OliI CACNNNNGTG 1 cut(s) 975
PaeR7I CTCGAG 3 cut(s) 351, 2849, 3982
PagI TCATGA 5 cut(s) 934, 1633, 1936, 2686, 4431
PciI ACATGT 2 cut(s) 2935, 3925
PciSI GCTCTTC 2 cut(s) 1065, 4065
PcsI WCGNNNNNNNCGW 2 cut(s) 1617, 4693
PctI GAATGC 2 cut(s) 1361, 3529
PdmI GAANNNNTTC 6 cut(s) 1620, 2337, 2586, 2590, 4059, 4134
PflFI GACNNNGTC 1 cut(s) 4787
PflMI CCANNNNNTGG 2 cut(s) 3823, 4147
PfoI TCCNGGA 2 cut(s) 1762, 2557
PinAI ACCGGT 1 cut(s) 4205
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 8 cut(s) 79, 151, 263, 1228, 2062, 2225, 3641, 4369
PmaCI CACGTG 1 cut(s) 4682
PmlI CACGTG 1 cut(s) 4682
PpsI GAGTC 8 cut(s) 79, 151, 263, 1228, 2062, 2225, 3641, 4369
Ppu21I YACGTR 4 cut(s) 1028, 2276, 3977, 4682
PscI ACATGT 2 cut(s) 2935, 3925
PshBI ATTAAT 2 cut(s) 888, 2807
PsiI TTATAA 1 cut(s) 4797
Psp124BI GAGCTC 1 cut(s) 3668
Psp1406I AACGTT 2 cut(s) 2857, 4736
Psp6I CCWGG 7 cut(s) 1359, 1762, 2071, 2557, 2722, 3346, 4140
PspCI CACGTG 1 cut(s) 4682
PspEI GGTNACC 2 cut(s) 791, 1772
PspFI CCCAGC 3 cut(s) 379, 755, 3816
PspGI CCWGG 7 cut(s) 1359, 1762, 2071, 2557, 2722, 3346, 4140
PspN4I GGNNCC 5 cut(s) 454, 2427, 4293, 4777, 5146
PspPI GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4775
PspXI VCTCGAGB 2 cut(s) 351, 3982
PstI CTGCAG 2 cut(s) 814, 2662
PstNI CAGNNNCTG 5 cut(s) 2989, 3823, 4147, 4310, 4369
PsuI RGATCY 9 cut(s) 175, 1682, 2176, 2425, 3360, 3736, 4421, 4455, 5150
PsyI GACNNNGTC 1 cut(s) 4787
PvuI CGATCG 1 cut(s) 187
PvuII CAGCTG 4 cut(s) 125, 379, 4127, 4307
RseI CAYNNNNRTG 9 cut(s) 642, 711, 873, 975, 1638, 1849, 2945, 4929, 4935
SacI GAGCTC 1 cut(s) 3668
SalI GTCGAC 1 cut(s) 5021
SapI GCTCTTC 2 cut(s) 1065, 4065
Sau96I GGNCC 7 cut(s) 226, 404, 1895, 2125, 3167, 4074, 4775
ScaI AGTACT 4 cut(s) 2316, 2762, 3158, 4659
SchI GAGTC 8 cut(s) 79, 152, 263, 1229, 2062, 2225, 3641, 4369
SduI GDGCHC 6 cut(s) 726, 880, 1596, 2281, 3668, 5044
SfaNI GCATC 9 cut(s) 853, 1391, 2404, 2854, 3440, 4160, 4327, 4891, 4913
SfcI CTRYAG 6 cut(s) 194, 810, 2284, 2658, 4358, 5167
Sfr274I CTCGAG 3 cut(s) 351, 2849, 3982
SfuI TTCGAA 1 cut(s) 2839
SgrAI CRCCGGYG 1 cut(s) 213
SinI GGWCC 4 cut(s) 226, 1895, 3167, 4074
SlaI CTCGAG 3 cut(s) 351, 2849, 3982
SmiMI CAYNNNNRTG 9 cut(s) 642, 711, 873, 975, 1638, 1849, 2945, 4929, 4935
SmlI CTYRAG 5 cut(s) 107, 351, 2111, 2849, 3982
SmoI CTYRAG 5 cut(s) 107, 351, 2111, 2849, 3982
SnaBI TACGTA 1 cut(s) 1028
SspI AATATT 6 cut(s) 853, 1863, 2346, 3495, 3780, 4181
SspMI CTAG 5 cut(s) 1647, 2226, 3689, 4248, 4608
SstI GAGCTC 1 cut(s) 3668
StyI CCWWGG 7 cut(s) 858, 1514, 2640, 2732, 4286, 4537, 4607
TaiI ACGT 8 cut(s) 1030, 2278, 2860, 3979, 4243, 4684, 4739, 4836
TaqII GACCGA 1 cut(s) 4091
TatI WGTACW 7 cut(s) 1463, 2314, 2419, 2760, 3156, 4645, 4657
TauI GCSGC 7 cut(s) 259, 325, 328, 331, 1870, 4343, 4850
TseFI GTSAC 9 cut(s) 771, 791, 1772, 2504, 2575, 3242, 4372, 5006, 5171
Tsp45I GTSAC 9 cut(s) 771, 791, 1772, 2504, 2575, 3242, 4372, 5006, 5171
TspGWI ACGGA 5 cut(s) 420, 448, 2523, 3058, 3629
Tth111I GACNNNGTC 1 cut(s) 4787
Van91I CCANNNNNTGG 2 cut(s) 3823, 4147
VpaK11BI GGWCC 4 cut(s) 226, 1895, 3167, 4074
VspI ATTAAT 2 cut(s) 888, 2807
XagI CCTNNNNNAGG 1 cut(s) 4139
XapI RAATTY 8 cut(s) 1205, 1616, 2337, 2479, 2586, 3849, 3958, 4916
XceI RCATGY 4 cut(s) 2939, 3929, 4357, 4934
XcmI CCANNNNNNNNNTGG 1 cut(s) 3893
XhoI CTCGAG 3 cut(s) 351, 2849, 3982
XmaJI CCTAGG 1 cut(s) 4607
XmiI GTMKAC 1 cut(s) 5022
XmnI GAANNNNTTC 6 cut(s) 1620, 2337, 2586, 2590, 4059, 4134
XspI CTAG 5 cut(s) 1647, 2226, 3689, 4248, 4608
ZrmI AGTACT 4 cut(s) 2316, 2762, 3158, 4659
Zsp2I ATGCAT 1 cut(s) 4906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.