Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002907

Physical Location & Seq

Genomic Coordinates Reverse (-)

41190068 .. 41194146

Gene Structure 4079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G026610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGTTCTTGGGCTTTGGCCATTTACTCTCGATGAATTCGTTCAAGCTTTTCATGACTATGATTCTAGGTTGTTGGGTGAGATTACATATTTCACTTCTAAGATCCATCATTAAAGACATTGAAGATGTTGCAAGAATACCCTCTATGGGGGTGGGAGCTAATCAGAACTGCGCTGCAAATCCTGGAGGCGGTCACCCTCAAATTGTAGAAGGGGCATATGCTTGGGGATTTGACATCAAAAGCTGGAAGTGCAACTTAAATCCACTGACATGGCCAGAAATATTGCGGCAATTTTCTGTATCAGCAGGATTTGGACCGCAACTGAAGAAGAGGGATGTTGAACCAGCTTATCTTCACGAGGACAATGAGGGTAATGATGTCAAGGATATAATTTCCAATTTACGCAGTGGAGTAGCTGTAAAAAATGCCTTCGCTATTATGCAAGAAAGGGGTTTTTCTAACCCTCGCAAATCAAGGCATTGCTTGACTCCTGGCACTGTTAAGTTCGCAGCATTTCATGTTCTTTCTCTTGAGGGGAGCAAGGGCCTTAACATATTAGAAGTTGCAGACAGGATTCAGAAATCAGGACTTCGGGATCTCACAACAAGCAAGACACCAGAAGCCTCGATAGCTGCTGCTTTGTCTAGGGACTCAAAACTATTTGAGAGAACTGCACCTTCTACTTACTGTGTACGTGCTCCCTACAGAAAGGACACAAGTGATTCCGAGGCAGTACTTTCGGCAGCCAGAGAAAGAATTCAAATATTCAATAGTAGGATTTTTGATGTTGAAGGAGCTGATGAAGCTGAAAGAGACGAAGAATCTGAAAGTGATGCAGTAGAGGATCCTGAGTTTGATGATTTAGGCACTGAAATAAATCCAAAGATAGTAGCTCAGAATTCTGAAGAAGCAAGAAAAGTCAGTGACGGAATATCTTTGGAAAGTGGAAAAGGAAGTTGTGAGGTTAGTAAAGCTCCAGGAGACCTTAGGAATGTCACAGAAGGAATTCCTTCAATCAATTCTGAAGCGTCCATCAAGGTTGAAGACGCTGGTTGTTCCTTGGATTCTGTTGACGCTGCAGGAATCTGCAACAATGTAGCTAATCATGATCAAGAAGATACAGAGATTGATGATAGCAACCCTGGTGAGCCATGGGTTCAAGGACTTACAGAAGGGGAGTACTCTGATCTTAGTGTTGAGGAGCGCCTCAATGCACTTGCTGCATTAATTGGTGTGGCAATAGAAGGAAACTCGATTCGAATTGTTCTCGAGGAACGTTTAGATGCTGCAAATGCTTTAAAGAAGCAAATGTGGGCAGTGGCGCAAGTTGATAAACGGCGTCTAAAAGAAGAACATGTCATCAAAATGCAATATACCCCTTTCATTGGGAACAAGACTGAGCAGAGCCTGACAATTCCTTCAGAAAATAGGCAAAGTCCATCTCCTACCGTTGATGAGAAAAACATTGAGACGACGGTGAAGCTTTCCGTCCTGCAAGAGCAGATGGTTGATCCACAAAATGAGCAAAATTATATCAACAGTTTTCCTTCTGTACGAAACCTCCAAATGCAGGAGTACTCTGTTGGTCCAGACAATCACCCATTTCAGCAACCCGGTCATATTGCTGATAAGTCGCACAAACAATTAAAATCTTATATTGGTCACAAAGCAGAGGAGATGTATGTTTATCGATCATTGCCTCTTGGTCAGGATCGTAGGCATAATAGATACTGGCAGTTTATTACATCTGCCTCTCGAAATGATCCTGGTTGTGGCAGGATCTTTGTTGAGCTGCATGACGGTCGTTGGAGGCTTATTGATTCTGAAGAGGGCTTTGATGGTCTTTTGGCATCTTTGGATGTGCGTGGGTATAGGGAATCCCATTTGCAGACAATGTTGCAGAAGACTGAAATATTCTTCAAGGAAACTGTTAGAAGAAACAAGTTGCATTCTAACCGGGGGAGGCATATCAAAGACACTGCTAAAACAGAAGATGTTGAAATGCCTTCTGGTTATGATTGCATGGTGGTACGGATAGCCCTACCAGCTATGTTTCTGTTGCTGACTCCGATATGTTGGAGAGCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

696

Amino Acids

77.74

Weight (kDa)

5.41

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HARE-HTH	PF05066	165 - 232	3.9e-18	HB1, ASXL, restriction endonuclease HTH domain
WHIM1	PF15612	381 - 424	1.3e-10	WSTF, HB1, Itc1p, MBD9 motif 1
WSD	PF15613	563 - 636	5.4e-22	Williams-Beuren syndrome DDT (WSD), D-TOX E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44180 AT5G44180 AT5G44180
fragaria_vesca	FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700
rosa_chinensis	RchiOBHm_Chr2g0127081 RchiOBHm_Chr2g0127091
rosa_laevigata	RLG00000018980 RLG00000023032
rosa_multiflora	Rmu_sc0000023.1_g000012 Rmu_sc0008093.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026470 Rroxscaffold_2G00115760 Rroxscaffold_2G00116210 Rroxscaffold_5G00354400
rosa_rugosa	Rorug02G0277500 Rorug06G0129600 Rorug07G0322700
rosa_samantha	Rh1BG059500 Rh2AG328000 Rh2BG338000 Rh2CG315100 Rh2DG355100 Rh3DG168700 Rh4AG158500 Rh4DG153200 Rh7AG477100
rosa_wichuraiana	Rw2G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	189, 286, 317
AclI	AACGTT	1 cut(s)	1276
AclWI	GGATC	8 cut(s)	96, 603, 839, 852, 1505, 1719, 1757, 1787
AcoI	YGGCCR	2 cut(s)	16, 272
AcsI	RAATTY	4 cut(s)	34, 756, 898, 1005
AcuI	CTGAAG	5 cut(s)	344, 924, 1044, 1404, 1845
AcyI	GRCGYC	1 cut(s)	1339
AfaI	GTAC	6 cut(s)	693, 735, 1181, 1554, 1577, 2031
AfiI	CCNNNNNNNGG	6 cut(s)	146, 147, 188, 1385, 1570, 1772
AflIII	ACRYGT	1 cut(s)	1354
AjnI	CCWGG	5 cut(s)	181, 490, 976, 1141, 1765
Alw21I	GWGCWC	2 cut(s)	700, 2086
Alw26I	GTCTC	3 cut(s)	807, 975, 1463
AlwI	GGATC	8 cut(s)	96, 603, 839, 852, 1505, 1719, 1757, 1787
AlwNI	CAGNNNCTG	1 cut(s)	1408
Ama87I	CYCGRG	1 cut(s)	1268
AoxI	GGCC	3 cut(s)	16, 272, 544
ApeKI	GCWGC	9 cut(s)	173, 509, 632, 635, 743, 1076, 1220, 1286, 1792
ApoI	RAATTY	4 cut(s)	34, 756, 898, 1005
AseI	ATTAAT	1 cut(s)	1226
Asp700I	GAANNNNTTC	4 cut(s)	38, 756, 1005, 1009
AspLEI	GCGC	3 cut(s)	173, 1206, 1324
AspS9I	GGNCC	3 cut(s)	314, 544, 1586
AsuC2I	CCSGG	2 cut(s)	1614, 1958
AsuHPI	GGTGA	5 cut(s)	88, 185, 1157, 1489, 1589
AsuII	TTCGAA	1 cut(s)	1258
AvaI	CYCGRG	1 cut(s)	1268
AvaII	GGWCC	2 cut(s)	314, 1586
AxyI	CCTNAGG	1 cut(s)	986
BalI	TGGCCA	2 cut(s)	18, 274
BamHI	GGATCC	1 cut(s)	844
BanII	GRGCYC	1 cut(s)	2086
BauI	CACGAG	1 cut(s)	356
BbsI	GAAGAC	2 cut(s)	1050, 1910
Bbv12I	GWGCWC	2 cut(s)	700, 2086
BbvI	GCAGC	9 cut(s)	160, 521, 619, 622, 755, 1063, 1207, 1273, 1779
BccI	CCATC	5 cut(s)	113, 1040, 1447, 1498, 1832
BceAI	ACGGC	1 cut(s)	1352
BcgI	CGANNNNNNTGC	4 cut(s)	720, 754, 1784, 1818
BciT130I	CCWGG	5 cut(s)	183, 492, 978, 1143, 1767
BclI	TGATCA	1 cut(s)	1108
BcnI	CCSGG	2 cut(s)	1614, 1958
BcoDI	GTCTC	3 cut(s)	807, 975, 1463
BfaI	CTAG	2 cut(s)	65, 645
BfmI	CTRYAG	2 cut(s)	703, 1077
BfoI	RGCGCY	1 cut(s)	1207
BmcAI	AGTACT	3 cut(s)	735, 1181, 1577
Bme1390I	CCNGG	7 cut(s)	183, 492, 978, 1143, 1614, 1767, 1958
Bme18I	GGWCC	2 cut(s)	314, 1586
BmeT110I	CYCGRG	1 cut(s)	1268
BmgT120I	GGNCC	3 cut(s)	314, 544, 1586
BmiI	GGNNCC	1 cut(s)	846
BmrFI	CCNGG	7 cut(s)	183, 492, 978, 1143, 1614, 1767, 1958
BmsI	GCATC	3 cut(s)	823, 1273, 1859
BpiI	GAAGAC	2 cut(s)	1050, 1910
BpmI	CTGGAG	2 cut(s)	204, 960
Bpu14I	TTCGAA	1 cut(s)	1258
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	1614, 1958
Bsa29I	ATCGAT	1 cut(s)	1690
BsaAI	YACGTR	1 cut(s)	695
BsaHI	GRCGYC	1 cut(s)	1339
BsaI	GGTCTC	1 cut(s)	975
BsaJI	CCNNGG	5 cut(s)	726, 1059, 1141, 1151, 1957
BsaXI	ACNNNNNCTCC	4 cut(s)	402, 432, 1545, 1575
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 147, 188, 1385, 1570, 1772
Bse1I	ACTGG	1 cut(s)	1736
Bse21I	CCTNAGG	1 cut(s)	986
Bse3DI	GCAATG	2 cut(s)	478, 1694
BseBI	CCWGG	5 cut(s)	183, 492, 978, 1143, 1767
BseCI	ATCGAT	1 cut(s)	1690
BseDI	CCNNGG	5 cut(s)	726, 1059, 1141, 1151, 1957
BseGI	GGATG	2 cut(s)	340, 1864
BseLI	CCNNNNNNNGG	6 cut(s)	146, 147, 188, 1385, 1570, 1772
BseMI	GCAATG	2 cut(s)	478, 1694
BseMII	CTCAG	3 cut(s)	840, 908, 1389
BseNI	ACTGG	1 cut(s)	1736
BseRI	GAGGAG	2 cut(s)	1214, 1688
BseXI	GCAGC	9 cut(s)	160, 521, 619, 622, 755, 1063, 1207, 1273, 1779
BsgI	GTGCAG	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	1804
BshFI	GGCC	3 cut(s)	18, 274, 546
BshVI	ATCGAT	1 cut(s)	1690
BsiEI	CGRYCG	1 cut(s)	1804
BsiHKAI	GWGCWC	2 cut(s)	700, 2086
BsiHKCI	CYCGRG	1 cut(s)	1268
BsiSI	CCGG	2 cut(s)	1614, 1957
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	6 cut(s)	146, 147, 188, 1385, 1570, 1772
BsmAI	GTCTC	3 cut(s)	807, 975, 1463
BsmBI	CGTCTC	2 cut(s)	807, 1463
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	1948
BsnI	GGCC	3 cut(s)	18, 274, 546
Bso31I	GGTCTC	1 cut(s)	975
BsoBI	CYCGRG	1 cut(s)	1268
Bsp119I	TTCGAA	1 cut(s)	1258
Bsp1286I	GDGCHC	2 cut(s)	700, 2086
Bsp19I	CCATGG	1 cut(s)	1151
BspACI	CCGC	3 cut(s)	189, 286, 317
BspANI	GGCC	3 cut(s)	18, 274, 546
BspCNI	CTCAG	3 cut(s)	841, 907, 1390
BspDI	ATCGAT	1 cut(s)	1690
BspHI	TCATGA	2 cut(s)	51, 1105
BspLI	GGNNCC	1 cut(s)	846
BspMAI	CTGCAG	1 cut(s)	1081
BspPI	GGATC	8 cut(s)	96, 603, 839, 852, 1505, 1719, 1757, 1787
BspT104I	TTCGAA	1 cut(s)	1258
BspTNI	GGTCTC	1 cut(s)	975
BsrDI	GCAATG	2 cut(s)	478, 1694
BsrI	ACTGG	1 cut(s)	1736
BssECI	CCNNGG	5 cut(s)	726, 1059, 1141, 1151, 1957
BssNI	GRCGYC	1 cut(s)	1339
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	2 cut(s)	1059, 1151
Bst2BI	CACGAG	1 cut(s)	356
Bst2UI	CCWGG	5 cut(s)	183, 492, 978, 1143, 1767
Bst4CI	ACNGT	7 cut(s)	499, 689, 1450, 1477, 1541, 1802, 1930
Bst6I	CTCTTC	2 cut(s)	323, 1821
BstACI	GRCGYC	1 cut(s)	1339
BstAPI	GCANNNNNTGC	1 cut(s)	1220
BstBAI	YACGTR	1 cut(s)	695
BstBI	TTCGAA	1 cut(s)	1258
BstDEI	CTNAG	6 cut(s)	98, 849, 894, 986, 1190, 1398
BstDSI	CCRYGG	1 cut(s)	1151
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	340, 1864
BstH2I	RGCGCY	1 cut(s)	1207
BstHHI	GCGC	3 cut(s)	173, 1206, 1324
BstMAI	GTCTC	3 cut(s)	807, 975, 1463
BstMCI	CGRYCG	1 cut(s)	1804
BstMWI	GCNNNNNNNGC	6 cut(s)	249, 629, 803, 1220, 1292, 2045
BstNI	CCWGG	5 cut(s)	183, 492, 978, 1143, 1767
BstNSI	RCATGY	1 cut(s)	1358
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	7 cut(s)	181, 490, 976, 1141, 1612, 1765, 1956
BstSFI	CTRYAG	2 cut(s)	703, 1077
BstV1I	GCAGC	9 cut(s)	160, 521, 619, 622, 755, 1063, 1207, 1273, 1779
BstV2I	GAAGAC	2 cut(s)	1050, 1910
BstX2I	RGATCY	4 cut(s)	101, 595, 844, 1779
BstXI	CCANNNNNNTGG	1 cut(s)	270
BstYI	RGATCY	4 cut(s)	101, 595, 844, 1779
Bsu15I	ATCGAT	1 cut(s)	1690
Bsu36I	CCTNAGG	1 cut(s)	986
BsuRI	GGCC	3 cut(s)	18, 274, 546
BsuTUI	ATCGAT	1 cut(s)	1690
BtgI	CCRYGG	1 cut(s)	1151
BtsCI	GGATG	2 cut(s)	340, 1864
BtsI	GCAGTG	3 cut(s)	412, 1323, 1977
BtsIMutI	CAGTG	7 cut(s)	263, 412, 495, 867, 928, 1323, 1977
CaiI	CAGNNNCTG	1 cut(s)	1408
CciI	TCATGA	2 cut(s)	51, 1105
CfoI	GCGC	3 cut(s)	173, 1206, 1324
Cfr13I	GGNCC	3 cut(s)	314, 544, 1586
ClaI	ATCGAT	1 cut(s)	1690
CseI	GACGC	4 cut(s)	1017, 1055, 1082, 1328
Csp6I	GTAC	6 cut(s)	692, 734, 1180, 1553, 1576, 2030
CviAII	CATG	8 cut(s)	52, 270, 518, 1106, 1152, 1355, 1796, 2023
CviQI	GTAC	6 cut(s)	692, 734, 1180, 1553, 1576, 2030
DdeI	CTNAG	6 cut(s)	98, 849, 894, 986, 1190, 1398
DraI	TTTAAA	1 cut(s)	1299
EaeI	YGGCCR	2 cut(s)	16, 272
Eam1104I	CTCTTC	2 cut(s)	323, 1821
EarI	CTCTTC	2 cut(s)	323, 1821
Ecl136II	GAGCTC	1 cut(s)	2084
Eco130I	CCWWGG	2 cut(s)	1059, 1151
Eco24I	GRGCYC	1 cut(s)	2086
Eco31I	GGTCTC	1 cut(s)	975
Eco47I	GGWCC	2 cut(s)	314, 1586
Eco53kI	GAGCTC	1 cut(s)	2084
Eco57I	CTGAAG	5 cut(s)	344, 924, 1044, 1404, 1845
Eco81I	CCTNAGG	1 cut(s)	986
Eco88I	CYCGRG	1 cut(s)	1268
Eco91I	GGTNACC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	2084
EcoO109I	RGGNCCY	1 cut(s)	544
EcoO65I	GGTNACC	1 cut(s)	191
EcoRI	GAATTC	4 cut(s)	34, 756, 898, 1005
EcoRII	CCWGG	5 cut(s)	181, 490, 976, 1141, 1765
EcoT14I	CCWWGG	2 cut(s)	1059, 1151
EcoT38I	GRGCYC	1 cut(s)	2086
ErhI	CCWWGG	2 cut(s)	1059, 1151
Esp3I	CGTCTC	2 cut(s)	807, 1463
FaeI	CATG	8 cut(s)	55, 273, 521, 1109, 1155, 1358, 1799, 2026
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	8 cut(s)	51, 269, 517, 1105, 1151, 1354, 1795, 2022
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	1108
FokI	GGATG	2 cut(s)	347, 1871
FriOI	GRGCYC	1 cut(s)	2086
FspBI	CTAG	2 cut(s)	65, 645
GlaI	GCGC	3 cut(s)	172, 1205, 1323
GsuI	CTGGAG	2 cut(s)	204, 960
HaeII	RGCGCY	1 cut(s)	1207
HaeIII	GGCC	3 cut(s)	18, 274, 546
HapII	CCGG	2 cut(s)	1614, 1957
HgaI	GACGC	4 cut(s)	1017, 1055, 1082, 1328
HhaI	GCGC	3 cut(s)	173, 1206, 1324
Hin1I	GRCGYC	1 cut(s)	1339
Hin1II	CATG	8 cut(s)	55, 273, 521, 1109, 1155, 1358, 1799, 2026
Hin6I	GCGC	3 cut(s)	171, 1204, 1322
HinP1I	GCGC	3 cut(s)	171, 1204, 1322
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HindIII	AAGCTT	2 cut(s)	44, 1481
HpaII	CCGG	2 cut(s)	1614, 1957
HphI	GGTGA	5 cut(s)	88, 185, 1157, 1489, 1589
Hpy166II	GTNNAC	2 cut(s)	692, 1072
Hpy8I	GTNNAC	2 cut(s)	692, 1072
Hpy99I	CGWCG	1 cut(s)	1477
HpyCH4III	ACNGT	7 cut(s)	499, 689, 1450, 1477, 1541, 1802, 1930
HpyCH4IV	ACGT	2 cut(s)	694, 1276
HpyF10VI	GCNNNNNNNGC	6 cut(s)	249, 629, 803, 1220, 1292, 2045
HpyF3I	CTNAG	6 cut(s)	98, 849, 894, 986, 1190, 1398
HpySE526I	ACGT	2 cut(s)	694, 1276
Hsp92I	GRCGYC	1 cut(s)	1339
Hsp92II	CATG	8 cut(s)	55, 273, 521, 1109, 1155, 1358, 1799, 2026
HspAI	GCGC	3 cut(s)	171, 1204, 1322
Ksp22I	TGATCA	1 cut(s)	1108
LmnI	GCTCC	6 cut(s)	155, 537, 703, 794, 979, 1201
Lsp1109I	GCAGC	9 cut(s)	160, 521, 619, 622, 755, 1063, 1207, 1273, 1779
LweI	GCATC	3 cut(s)	823, 1273, 1859
MaeI	CTAG	2 cut(s)	65, 645
MaeII	ACGT	2 cut(s)	694, 1276
MaeIII	GTNAC	4 cut(s)	191, 923, 994, 1661
MflI	RGATCY	4 cut(s)	101, 595, 844, 1779
MhlI	GDGCHC	2 cut(s)	700, 2086
MlsI	TGGCCA	2 cut(s)	18, 274
MluNI	TGGCCA	2 cut(s)	18, 274
MlyI	GAGTC	3 cut(s)	481, 644, 2059
MmeI	TCCRAC	2 cut(s)	1787, 2057
Mox20I	TGGCCA	2 cut(s)	18, 274
MroXI	GAANNNNTTC	4 cut(s)	38, 756, 1005, 1009
MscI	TGGCCA	2 cut(s)	18, 274
MseI	TTAA	7 cut(s)	111, 257, 501, 549, 1226, 1298, 1646
MslI	CAYNNNNRTG	3 cut(s)	56, 268, 1364
Msp20I	TGGCCA	2 cut(s)	18, 274
MspI	CCGG	2 cut(s)	1614, 1957
MspR9I	CCNGG	7 cut(s)	183, 492, 978, 1143, 1614, 1767, 1958
Mva1269I	GAATGC	1 cut(s)	1948
MvaI	CCWGG	5 cut(s)	183, 492, 978, 1143, 1767
MwoI	GCNNNNNNNGC	6 cut(s)	249, 629, 803, 1220, 1292, 2045
NciI	CCSGG	2 cut(s)	1614, 1958
NcoI	CCATGG	1 cut(s)	1151
NdeI	CATATG	1 cut(s)	217
NlaIII	CATG	8 cut(s)	55, 273, 521, 1109, 1155, 1358, 1799, 2026
NlaIV	GGNNCC	1 cut(s)	846
NmuCI	GTSAC	4 cut(s)	191, 923, 994, 1661
NspI	RCATGY	1 cut(s)	1358
NspV	TTCGAA	1 cut(s)	1258
PaeR7I	CTCGAG	1 cut(s)	1268
PagI	TCATGA	2 cut(s)	51, 1105
PciI	ACATGT	1 cut(s)	1354
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PctI	GAATGC	1 cut(s)	1948
PdmI	GAANNNNTTC	4 cut(s)	38, 756, 1005, 1009
PfeI	GAWTC	9 cut(s)	61, 574, 722, 821, 1064, 1083, 1255, 1820, 1877
PfoI	TCCNGGA	2 cut(s)	181, 976
PleI	GAGTC	3 cut(s)	481, 644, 2059
PpsI	GAGTC	3 cut(s)	481, 644, 2059
Ppu21I	YACGTR	1 cut(s)	695
PscI	ACATGT	1 cut(s)	1354
PshBI	ATTAAT	1 cut(s)	1226
Psp124BI	GAGCTC	1 cut(s)	2086
Psp1406I	AACGTT	1 cut(s)	1276
Psp6I	CCWGG	5 cut(s)	181, 490, 976, 1141, 1765
PspEI	GGTNACC	1 cut(s)	191
PspGI	CCWGG	5 cut(s)	181, 490, 976, 1141, 1765
PspN4I	GGNNCC	1 cut(s)	846
PspPI	GGNCC	3 cut(s)	314, 544, 1586
PstI	CTGCAG	1 cut(s)	1081
PstNI	CAGNNNCTG	1 cut(s)	1408
PsuI	RGATCY	4 cut(s)	101, 595, 844, 1779
RsaI	GTAC	6 cut(s)	693, 735, 1181, 1554, 1577, 2031
RsaNI	GTAC	6 cut(s)	692, 734, 1180, 1553, 1576, 2030
RseI	CAYNNNNRTG	3 cut(s)	56, 268, 1364
SacI	GAGCTC	1 cut(s)	2086
SaqAI	TTAA	7 cut(s)	111, 257, 501, 549, 1226, 1298, 1646
Sau96I	GGNCC	3 cut(s)	314, 544, 1586
ScaI	AGTACT	3 cut(s)	735, 1181, 1577
SchI	GAGTC	3 cut(s)	481, 644, 2059
ScrFI	CCNGG	7 cut(s)	183, 492, 978, 1143, 1614, 1767, 1958
SduI	GDGCHC	2 cut(s)	700, 2086
SfaNI	GCATC	3 cut(s)	823, 1273, 1859
SfcI	CTRYAG	2 cut(s)	703, 1077
Sfr274I	CTCGAG	1 cut(s)	1268
SfuI	TTCGAA	1 cut(s)	1258
SinI	GGWCC	2 cut(s)	314, 1586
SlaI	CTCGAG	1 cut(s)	1268
SmiMI	CAYNNNNRTG	3 cut(s)	56, 268, 1364
SmlI	CTYRAG	2 cut(s)	530, 1268
SmoI	CTYRAG	2 cut(s)	530, 1268
SsiI	CCGC	3 cut(s)	189, 286, 317
SspI	AATATT	3 cut(s)	282, 765, 1914
SspMI	CTAG	2 cut(s)	65, 645
SstI	GAGCTC	1 cut(s)	2086
StyD4I	CCNGG	7 cut(s)	181, 490, 976, 1141, 1612, 1765, 1956
StyI	CCWWGG	2 cut(s)	1059, 1151
TaaI	ACNGT	7 cut(s)	499, 689, 1450, 1477, 1541, 1802, 1930
TaiI	ACGT	2 cut(s)	697, 1279
TaqI	TCGA	7 cut(s)	29, 626, 1253, 1258, 1269, 1690, 1756
TatI	WGTACW	3 cut(s)	733, 1179, 1575
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	9 cut(s)	61, 574, 722, 821, 1064, 1083, 1255, 1820, 1877
Tru1I	TTAA	7 cut(s)	111, 257, 501, 549, 1226, 1298, 1646
Tru9I	TTAA	7 cut(s)	111, 257, 501, 549, 1226, 1298, 1646
TscAI	CASTG	7 cut(s)	270, 412, 502, 874, 928, 1323, 1984
TseFI	GTSAC	4 cut(s)	191, 923, 994, 1661
TseI	GCWGC	9 cut(s)	173, 509, 632, 635, 743, 1076, 1220, 1286, 1792
Tsp45I	GTSAC	4 cut(s)	191, 923, 994, 1661
TspDTI	ATGAA	5 cut(s)	40, 47, 506, 816, 1372
TspGWI	ACGGA	3 cut(s)	942, 1477, 2047
TspRI	CASTG	7 cut(s)	270, 412, 502, 874, 928, 1323, 1984
VpaK11BI	GGWCC	2 cut(s)	314, 1586
VspI	ATTAAT	1 cut(s)	1226
XapI	RAATTY	4 cut(s)	34, 756, 898, 1005
XceI	RCATGY	1 cut(s)	1358
XhoI	CTCGAG	1 cut(s)	1268
XmnI	GAANNNNTTC	4 cut(s)	38, 756, 1005, 1009
XspI	CTAG	2 cut(s)	65, 645
ZrmI	AGTACT	3 cut(s)	735, 1181, 1577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.