HB1, ASXL, restriction endonuclease HTH domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G44180 AT5G44180 AT5G44180 |
| fragaria_vesca | FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 |
| rosa_chinensis | RchiOBHm_Chr2g0127081 RchiOBHm_Chr2g0127091 |
| rosa_laevigata | RLG00000018980 RLG00000023032 |
| rosa_multiflora | Rmu_sc0000023.1_g000012 Rmu_sc0008093.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00026470 Rroxscaffold_2G00115760 Rroxscaffold_2G00116210 Rroxscaffold_5G00354400 |
| rosa_rugosa | Rorug02G0277500 Rorug06G0129600 Rorug07G0322700 |
| rosa_samantha | Rh1BG059500 Rh2AG328000 Rh2BG338000 Rh2CG315100 Rh2DG355100 Rh3DG168700 Rh4AG158500 Rh4DG153200 Rh7AG477100 |
| rosa_wichuraiana | Rw2G026610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 701, 1007 |
| AciI | CCGC | 9 cut(s) | 20, 331, 599, 701, 710, 749, 811, 1007, 1235 |
| AclWI | GGATC | 2 cut(s) | 258, 496 |
| AfaI | GTAC | 2 cut(s) | 791, 1029 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 323, 733, 1006, 1104 |
| AgsI | TTSAA | 2 cut(s) | 74, 298 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| Alw26I | GTCTC | 3 cut(s) | 55, 190, 1363 |
| AlwI | GGATC | 2 cut(s) | 258, 496 |
| Ama87I | CYCGRG | 2 cut(s) | 162, 426 |
| AoxI | GGCC | 3 cut(s) | 83, 188, 1286 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 370 |
| AspA2I | CCTAGG | 1 cut(s) | 884 |
| AspLEI | GCGC | 1 cut(s) | 451 |
| AspS9I | GGNCC | 3 cut(s) | 301, 518, 997 |
| AsuC2I | CCSGG | 1 cut(s) | 488 |
| AsuHPI | GGTGA | 4 cut(s) | 97, 196, 598, 1224 |
| AsuII | TTCGAA | 1 cut(s) | 1155 |
| AvaI | CYCGRG | 2 cut(s) | 162, 426 |
| AvaII | GGWCC | 3 cut(s) | 301, 518, 997 |
| AvrII | CCTAGG | 1 cut(s) | 884 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 894, 927 |
| BanII | GRGCYC | 1 cut(s) | 228 |
| BbsI | GAAGAC | 3 cut(s) | 223, 643, 784 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BccI | CCATC | 6 cut(s) | 24, 75, 568, 723, 851, 1121 |
| BceAI | ACGGC | 1 cut(s) | 98 |
| BclI | TGATCA | 1 cut(s) | 259 |
| BcnI | CCSGG | 1 cut(s) | 488 |
| BcoDI | GTCTC | 3 cut(s) | 55, 190, 1363 |
| BfaI | CTAG | 2 cut(s) | 354, 885 |
| BfmI | CTRYAG | 1 cut(s) | 269 |
| BglII | AGATCT | 1 cut(s) | 915 |
| BlnI | CCTAGG | 1 cut(s) | 884 |
| Bme1390I | CCNGG | 1 cut(s) | 488 |
| Bme18I | GGWCC | 3 cut(s) | 301, 518, 997 |
| BmeT110I | CYCGRG | 2 cut(s) | 162, 426 |
| BmgT120I | GGNCC | 3 cut(s) | 301, 518, 997 |
| BmiI | GGNNCC | 4 cut(s) | 462, 519, 890, 1214 |
| BmrFI | CCNGG | 1 cut(s) | 488 |
| BmrI | ACTGGG | 1 cut(s) | 523 |
| BmuI | ACTGGG | 1 cut(s) | 523 |
| BpiI | GAAGAC | 3 cut(s) | 223, 643, 784 |
| BpmI | CTGGAG | 2 cut(s) | 333, 555 |
| Bpu10I | CCTNAGC | 1 cut(s) | 227 |
| Bpu14I | TTCGAA | 1 cut(s) | 1155 |
| BpuMI | CCSGG | 1 cut(s) | 488 |
| BsaI | GGTCTC | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 5 cut(s) | 80, 191, 884, 906, 1000 |
| BsaWI | WCCGGW | 2 cut(s) | 288, 1061 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 323, 733, 1006, 1104 |
| Bse1I | ACTGG | 6 cut(s) | 204, 367, 518, 538, 931, 1214 |
| Bse3DI | GCAATG | 1 cut(s) | 1185 |
| BseDI | CCNNGG | 5 cut(s) | 80, 191, 884, 906, 1000 |
| BseGI | GGATG | 2 cut(s) | 16, 576 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 323, 733, 1006, 1104 |
| BseMI | GCAATG | 1 cut(s) | 1185 |
| BseMII | CTCAG | 3 cut(s) | 241, 366, 632 |
| BseNI | ACTGG | 6 cut(s) | 204, 367, 518, 538, 931, 1214 |
| BseRI | GAGGAG | 4 cut(s) | 617, 628, 705, 767 |
| BseYI | CCCAGC | 2 cut(s) | 454, 476 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1011 |
| BshFI | GGCC | 3 cut(s) | 85, 190, 1288 |
| BsiEI | CGRYCG | 1 cut(s) | 1011 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| BsiHKCI | CYCGRG | 2 cut(s) | 162, 426 |
| BsiSI | CCGG | 3 cut(s) | 289, 487, 1062 |
| BslFI | GGGAC | 2 cut(s) | 224, 531 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 323, 733, 1006, 1104 |
| BsmAI | GTCTC | 3 cut(s) | 55, 190, 1363 |
| BsmFI | GGGAC | 2 cut(s) | 224, 531 |
| BsnI | GGCC | 3 cut(s) | 85, 190, 1288 |
| Bso31I | GGTCTC | 1 cut(s) | 55 |
| BsoBI | CYCGRG | 2 cut(s) | 162, 426 |
| Bsp119I | TTCGAA | 1 cut(s) | 1155 |
| Bsp1286I | GDGCHC | 1 cut(s) | 228 |
| Bsp143I | GATC | 5 cut(s) | 250, 259, 501, 915, 924 |
| Bsp19I | CCATGG | 1 cut(s) | 191 |
| BspACI | CCGC | 9 cut(s) | 20, 331, 599, 701, 710, 749, 811, 1007, 1235 |
| BspANI | GGCC | 3 cut(s) | 85, 190, 1288 |
| BspCNI | CTCAG | 3 cut(s) | 240, 367, 633 |
| BspHI | TCATGA | 1 cut(s) | 58 |
| BspLI | GGNNCC | 4 cut(s) | 462, 519, 890, 1214 |
| BspPI | GGATC | 2 cut(s) | 258, 496 |
| BspT104I | TTCGAA | 1 cut(s) | 1155 |
| BspTNI | GGTCTC | 1 cut(s) | 55 |
| BsrBI | CCGCTC | 2 cut(s) | 701, 1007 |
| BsrDI | GCAATG | 1 cut(s) | 1185 |
| BsrI | ACTGG | 6 cut(s) | 204, 367, 518, 538, 931, 1214 |
| BssECI | CCNNGG | 5 cut(s) | 80, 191, 884, 906, 1000 |
| BssMI | GATC | 5 cut(s) | 250, 259, 501, 915, 924 |
| BssT1I | CCWWGG | 3 cut(s) | 191, 884, 906 |
| Bst4CI | ACNGT | 2 cut(s) | 305, 1027 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1299 |
| BstBI | TTCGAA | 1 cut(s) | 1155 |
| BstC8I | GCNNGC | 3 cut(s) | 708, 1336, 1340 |
| BstDEI | CTNAG | 4 cut(s) | 227, 375, 641, 1373 |
| BstDSI | CCRYGG | 2 cut(s) | 80, 191 |
| BstEII | GGTNACC | 1 cut(s) | 1230 |
| BstF5I | GGATG | 2 cut(s) | 16, 576 |
| BstHHI | GCGC | 1 cut(s) | 451 |
| BstKTI | GATC | 5 cut(s) | 253, 262, 504, 918, 927 |
| BstMAI | GTCTC | 3 cut(s) | 55, 190, 1363 |
| BstMBI | GATC | 5 cut(s) | 250, 259, 501, 915, 924 |
| BstMCI | CGRYCG | 1 cut(s) | 1011 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 403, 460, 707, 1029, 1299 |
| BstPI | GGTNACC | 1 cut(s) | 1230 |
| BstSCI | CCNGG | 1 cut(s) | 486 |
| BstSFI | CTRYAG | 1 cut(s) | 269 |
| BstV2I | GAAGAC | 3 cut(s) | 223, 643, 784 |
| BstX2I | RGATCY | 2 cut(s) | 250, 915 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1064 |
| BstYI | RGATCY | 2 cut(s) | 250, 915 |
| BsuRI | GGCC | 3 cut(s) | 85, 190, 1288 |
| BtgI | CCRYGG | 2 cut(s) | 80, 191 |
| BtgZI | GCGATG | 1 cut(s) | 98 |
| BtsCI | GGATG | 2 cut(s) | 16, 576 |
| BtsIMutI | CAGTG | 4 cut(s) | 511, 531, 938, 1207 |
| Cac8I | GCNNGC | 3 cut(s) | 708, 1336, 1340 |
| CciI | TCATGA | 1 cut(s) | 58 |
| CfoI | GCGC | 1 cut(s) | 451 |
| Cfr13I | GGNCC | 3 cut(s) | 301, 518, 997 |
| Csp6I | GTAC | 2 cut(s) | 790, 1028 |
| CviAII | CATG | 6 cut(s) | 11, 59, 192, 954, 1020, 1161 |
| CviQI | GTAC | 2 cut(s) | 790, 1028 |
| DdeI | CTNAG | 4 cut(s) | 227, 375, 641, 1373 |
| DpnI | GATC | 5 cut(s) | 252, 261, 503, 917, 926 |
| DpnII | GATC | 5 cut(s) | 250, 259, 501, 915, 924 |
| EciI | GGCGGA | 3 cut(s) | 9, 614, 764 |
| Ecl136II | GAGCTC | 1 cut(s) | 226 |
| Eco130I | CCWWGG | 3 cut(s) | 191, 884, 906 |
| Eco24I | GRGCYC | 1 cut(s) | 228 |
| Eco31I | GGTCTC | 1 cut(s) | 55 |
| Eco47I | GGWCC | 3 cut(s) | 301, 518, 997 |
| Eco53kI | GAGCTC | 1 cut(s) | 226 |
| Eco88I | CYCGRG | 2 cut(s) | 162, 426 |
| Eco91I | GGTNACC | 1 cut(s) | 1230 |
| EcoICRI | GAGCTC | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 2 cut(s) | 518, 997 |
| EcoO65I | GGTNACC | 1 cut(s) | 1230 |
| EcoT14I | CCWWGG | 3 cut(s) | 191, 884, 906 |
| EcoT38I | GRGCYC | 1 cut(s) | 228 |
| ErhI | CCWWGG | 3 cut(s) | 191, 884, 906 |
| FaeI | CATG | 6 cut(s) | 14, 62, 195, 957, 1023, 1164 |
| FaqI | GGGAC | 2 cut(s) | 224, 531 |
| FatI | CATG | 6 cut(s) | 10, 58, 191, 953, 1019, 1160 |
| FbaI | TGATCA | 1 cut(s) | 259 |
| FokI | GGATG | 2 cut(s) | 3, 583 |
| FriOI | GRGCYC | 1 cut(s) | 228 |
| FspBI | CTAG | 2 cut(s) | 354, 885 |
| GlaI | GCGC | 1 cut(s) | 450 |
| GsaI | CCCAGC | 2 cut(s) | 458, 480 |
| GsuI | CTGGAG | 2 cut(s) | 333, 555 |
| HaeIII | GGCC | 3 cut(s) | 85, 190, 1288 |
| HapII | CCGG | 3 cut(s) | 289, 487, 1062 |
| HhaI | GCGC | 1 cut(s) | 451 |
| Hin1II | CATG | 6 cut(s) | 14, 62, 195, 957, 1023, 1164 |
| Hin6I | GCGC | 1 cut(s) | 449 |
| HinP1I | GCGC | 1 cut(s) | 449 |
| HincII | GTYRAC | 1 cut(s) | 648 |
| HindII | GTYRAC | 1 cut(s) | 648 |
| HinfI | GANTC | 9 cut(s) | 27, 141, 313, 344, 544, 816, 961, 1085, 1202 |
| HpaII | CCGG | 3 cut(s) | 289, 487, 1062 |
| HphI | GGTGA | 4 cut(s) | 97, 196, 598, 1224 |
| Hpy166II | GTNNAC | 1 cut(s) | 648 |
| Hpy188I | TCNGA | 7 cut(s) | 259, 376, 560, 848, 924, 1004, 1117 |
| Hpy188III | TCNNGA | 3 cut(s) | 59, 796, 867 |
| Hpy8I | GTNNAC | 1 cut(s) | 648 |
| Hpy99I | CGWCG | 1 cut(s) | 95 |
| HpyAV | CCTTC | 7 cut(s) | 292, 334, 583, 601, 689, 1162, 1270 |
| HpyCH4III | ACNGT | 2 cut(s) | 305, 1027 |
| HpyCH4IV | ACGT | 1 cut(s) | 1072 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 827, 957, 1023, 1077, 1178, 1293, 1302, 1338 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 403, 460, 707, 1029, 1299 |
| HpyF3I | CTNAG | 4 cut(s) | 227, 375, 641, 1373 |
| HpySE526I | ACGT | 1 cut(s) | 1072 |
| Hsp92II | CATG | 6 cut(s) | 14, 62, 195, 957, 1023, 1164 |
| HspAI | GCGC | 1 cut(s) | 449 |
| Ksp22I | TGATCA | 1 cut(s) | 259 |
| Kzo9I | GATC | 5 cut(s) | 250, 259, 501, 915, 924 |
| LmnI | GCTCC | 9 cut(s) | 460, 536, 698, 703, 715, 738, 888, 986, 1004 |
| MaeI | CTAG | 2 cut(s) | 354, 885 |
| MaeII | ACGT | 1 cut(s) | 1072 |
| MaeIII | GTNAC | 2 cut(s) | 977, 1230 |
| MalI | GATC | 5 cut(s) | 252, 261, 503, 917, 926 |
| MbiI | CCGCTC | 2 cut(s) | 701, 1007 |
| MboI | GATC | 5 cut(s) | 250, 259, 501, 915, 924 |
| MflI | RGATCY | 2 cut(s) | 250, 915 |
| MhlI | GDGCHC | 1 cut(s) | 228 |
| MluCI | AATT | 1 cut(s) | 245 |
| MlyI | GAGTC | 3 cut(s) | 307, 338, 1196 |
| MmeI | TCCRAC | 2 cut(s) | 341, 538 |
| MroXI | GAANNNNTTC | 1 cut(s) | 370 |
| MseI | TTAA | 2 cut(s) | 912, 1103 |
| MslI | CAYNNNNRTG | 1 cut(s) | 552 |
| MspA1I | CMGCKG | 2 cut(s) | 130, 454 |
| MspI | CCGG | 3 cut(s) | 289, 487, 1062 |
| MspR9I | CCNGG | 1 cut(s) | 488 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 403, 460, 707, 1029, 1299 |
| NciI | CCSGG | 1 cut(s) | 488 |
| NcoI | CCATGG | 1 cut(s) | 191 |
| NdeII | GATC | 5 cut(s) | 250, 259, 501, 915, 924 |
| NlaIII | CATG | 6 cut(s) | 14, 62, 195, 957, 1023, 1164 |
| NlaIV | GGNNCC | 4 cut(s) | 462, 519, 890, 1214 |
| NmuCI | GTSAC | 2 cut(s) | 977, 1230 |
| NspV | TTCGAA | 1 cut(s) | 1155 |
| PaeR7I | CTCGAG | 1 cut(s) | 426 |
| PagI | TCATGA | 1 cut(s) | 58 |
| PdmI | GAANNNNTTC | 1 cut(s) | 370 |
| PfeI | GAWTC | 6 cut(s) | 27, 141, 544, 816, 961, 1085 |
| PleI | GAGTC | 3 cut(s) | 307, 338, 1196 |
| PpsI | GAGTC | 3 cut(s) | 307, 338, 1196 |
| PpuMI | RGGWCCY | 2 cut(s) | 518, 997 |
| Psp124BI | GAGCTC | 1 cut(s) | 228 |
| Psp5II | RGGWCCY | 2 cut(s) | 518, 997 |
| PspEI | GGTNACC | 1 cut(s) | 1230 |
| PspFI | CCCAGC | 2 cut(s) | 454, 476 |
| PspN4I | GGNNCC | 4 cut(s) | 462, 519, 890, 1214 |
| PspPI | GGNCC | 3 cut(s) | 301, 518, 997 |
| PspPPI | RGGWCCY | 2 cut(s) | 518, 997 |
| PspXI | VCTCGAGB | 1 cut(s) | 426 |
| PsuI | RGATCY | 2 cut(s) | 250, 915 |
| PvuII | CAGCTG | 2 cut(s) | 130, 454 |
| RsaI | GTAC | 2 cut(s) | 791, 1029 |
| RsaNI | GTAC | 2 cut(s) | 790, 1028 |
| RseI | CAYNNNNRTG | 1 cut(s) | 552 |
| SacI | GAGCTC | 1 cut(s) | 228 |
| SaqAI | TTAA | 2 cut(s) | 912, 1103 |
| Sau3AI | GATC | 5 cut(s) | 250, 259, 501, 915, 924 |
| Sau96I | GGNCC | 3 cut(s) | 301, 518, 997 |
| SchI | GAGTC | 3 cut(s) | 307, 338, 1196 |
| ScrFI | CCNGG | 1 cut(s) | 488 |
| SduI | GDGCHC | 1 cut(s) | 228 |
| SfcI | CTRYAG | 1 cut(s) | 269 |
| Sfr274I | CTCGAG | 1 cut(s) | 426 |
| SfuI | TTCGAA | 1 cut(s) | 1155 |
| SinI | GGWCC | 3 cut(s) | 301, 518, 997 |
| SlaI | CTCGAG | 1 cut(s) | 426 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 552 |
| SmlI | CTYRAG | 2 cut(s) | 426, 1366 |
| SmoI | CTYRAG | 2 cut(s) | 426, 1366 |
| Sse9I | AATT | 1 cut(s) | 245 |
| SsiI | CCGC | 9 cut(s) | 20, 331, 599, 701, 710, 749, 811, 1007, 1235 |
| SspMI | CTAG | 2 cut(s) | 354, 885 |
| SstI | GAGCTC | 1 cut(s) | 228 |
| StyD4I | CCNGG | 1 cut(s) | 486 |
| StyI | CCWWGG | 3 cut(s) | 191, 884, 906 |
| TaaI | ACNGT | 2 cut(s) | 305, 1027 |
| TaiI | ACGT | 1 cut(s) | 1075 |
| TaqI | TCGA | 5 cut(s) | 25, 139, 427, 866, 1155 |
| TasI | AATT | 1 cut(s) | 245 |
| TatI | WGTACW | 1 cut(s) | 789 |
| TauI | GCSGC | 2 cut(s) | 334, 814 |
| TfiI | GAWTC | 6 cut(s) | 27, 141, 544, 816, 961, 1085 |
| Tru1I | TTAA | 2 cut(s) | 912, 1103 |
| Tru9I | TTAA | 2 cut(s) | 912, 1103 |
| TscAI | CASTG | 4 cut(s) | 518, 538, 938, 1214 |
| TseFI | GTSAC | 2 cut(s) | 977, 1230 |
| Tsp45I | GTSAC | 2 cut(s) | 977, 1230 |
| TspDTI | ATGAA | 2 cut(s) | 32, 942 |
| TspGWI | ACGGA | 1 cut(s) | 494 |
| TspRI | CASTG | 4 cut(s) | 518, 538, 938, 1214 |
| VpaK11BI | GGWCC | 3 cut(s) | 301, 518, 997 |
| XhoI | CTCGAG | 1 cut(s) | 426 |
| XmaJI | CCTAGG | 1 cut(s) | 884 |
| XmnI | GAANNNNTTC | 1 cut(s) | 370 |
| XspI | CTAG | 2 cut(s) | 354, 885 |