Rmu_sc0000023.1_g000012

HB1, ASXL, restriction endonuclease HTH domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000023.1
Physical Location & Seq
Forward (+)
62525 .. 65722
3198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000023.1_g000012.1.cds

Sequence Viewer

Length: 1380 bp
atgcaatctcatgcccatccgcctcgaatccaccaactacttcatttggtctcatctcatgaccaccatcttcaacgcccacggcctcccgtcgcaatcaatctcacctcacatcgcaatcaatcacagctgcttcttcgattctcaatagctttgatttctcgggtttatgatatggttgaggtgaggccatggagactggcttggagggacagaagacaagagctcaggctcaatgaggcgaaattggatctttctgatcaacaactacagatgtggttttgccaccggagattgaaggaccgtaagccgactccaacgacagggaagcggcagaggaaggactctccagctagaacgactggaatggtttctgaggaaatggcagggagtgagccaatgtcgcagcagttgataatagaggctcgagctggtgcttttgtggaggcgcagctgggggagccattcagggaggctgggcgataccgggcttggagtttgatccgttgccactggggacctgtggctaacactggagcagcgattcacattgatgtcggattggagaggatgatggcagcattggtgaaggtttgggcggaggagaaggagaggagagagagaagaagaagaagaagactgaggttgacgaagaaacataagacatttttctttgatttcttgggcagaggagaaggagcggagcttgcggtggagctactacaccgatggcaggggagcagagaggcggaggagaagcagaaaaggatagagagaagacaaaggaagtacatcaagaaagaggcgaagcggcgaatccctgctgcaaaacaaagagaagtgttcagagattttgatggtgcttcgagaagccaacaagcacctaggagccaacaagcagataccaaggttaagatctctctgatctaccagtgctacttcctttgtttttcatgcaggaatctcttttattcttgtcactatggagctgtggaggtcctcggagcggtcgcaatctcatgcacggtacgctttatgtatcaacaagagtatgaccaatccggtggaatacgttgcagcagcgaatccaatacacccccattaaggttgtgttcagaaacttgtgatggcactccaaagtgtcagcaaaccttcgaaccatgtgaaaacaaggctgcaatgcctcttttcttccacaaagactctcactggttccaaaaatcagcaaggtcaccgccaagaagcctcctacctcctgccttcctttccacacaacaaaacaaatggccttgcaccacttgcaaaacaatccacacaaagaacaaaccagcagcttgcaagcaaggaggaaaggaaatcaaaaacttgagactaagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

459

Amino Acids

53.41

Weight (kDa)

10.09

Isoelectric Point (pI)

72.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 701, 1007
AciI CCGC 9 cut(s) 20, 331, 599, 701, 710, 749, 811, 1007, 1235
AclWI GGATC 2 cut(s) 258, 496
AfaI GTAC 2 cut(s) 791, 1029
AfiI CCNNNNNNNGG 4 cut(s) 323, 733, 1006, 1104
AgsI TTSAA 2 cut(s) 74, 298
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 3 cut(s) 55, 190, 1363
AlwI GGATC 2 cut(s) 258, 496
Ama87I CYCGRG 2 cut(s) 162, 426
AoxI GGCC 3 cut(s) 83, 188, 1286
Asp700I GAANNNNTTC 1 cut(s) 370
AspA2I CCTAGG 1 cut(s) 884
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 301, 518, 997
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 4 cut(s) 97, 196, 598, 1224
AsuII TTCGAA 1 cut(s) 1155
AvaI CYCGRG 2 cut(s) 162, 426
AvaII GGWCC 3 cut(s) 301, 518, 997
AvrII CCTAGG 1 cut(s) 884
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 3 cut(s) 223, 643, 784
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 6 cut(s) 24, 75, 568, 723, 851, 1121
BceAI ACGGC 1 cut(s) 98
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 1 cut(s) 488
BcoDI GTCTC 3 cut(s) 55, 190, 1363
BfaI CTAG 2 cut(s) 354, 885
BfmI CTRYAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 915
BlnI CCTAGG 1 cut(s) 884
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 3 cut(s) 301, 518, 997
BmeT110I CYCGRG 2 cut(s) 162, 426
BmgT120I GGNCC 3 cut(s) 301, 518, 997
BmiI GGNNCC 4 cut(s) 462, 519, 890, 1214
BmrFI CCNGG 1 cut(s) 488
BmrI ACTGGG 1 cut(s) 523
BmuI ACTGGG 1 cut(s) 523
BpiI GAAGAC 3 cut(s) 223, 643, 784
BpmI CTGGAG 2 cut(s) 333, 555
Bpu10I CCTNAGC 1 cut(s) 227
Bpu14I TTCGAA 1 cut(s) 1155
BpuMI CCSGG 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 5 cut(s) 80, 191, 884, 906, 1000
BsaWI WCCGGW 2 cut(s) 288, 1061
Bsc4I CCNNNNNNNGG 4 cut(s) 323, 733, 1006, 1104
Bse1I ACTGG 6 cut(s) 204, 367, 518, 538, 931, 1214
Bse3DI GCAATG 1 cut(s) 1185
BseDI CCNNGG 5 cut(s) 80, 191, 884, 906, 1000
BseGI GGATG 2 cut(s) 16, 576
BseLI CCNNNNNNNGG 4 cut(s) 323, 733, 1006, 1104
BseMI GCAATG 1 cut(s) 1185
BseMII CTCAG 3 cut(s) 241, 366, 632
BseNI ACTGG 6 cut(s) 204, 367, 518, 538, 931, 1214
BseRI GAGGAG 4 cut(s) 617, 628, 705, 767
BseYI CCCAGC 2 cut(s) 454, 476
Bsh1285I CGRYCG 1 cut(s) 1011
BshFI GGCC 3 cut(s) 85, 190, 1288
BsiEI CGRYCG 1 cut(s) 1011
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 162, 426
BsiSI CCGG 3 cut(s) 289, 487, 1062
BslFI GGGAC 2 cut(s) 224, 531
BslI CCNNNNNNNGG 4 cut(s) 323, 733, 1006, 1104
BsmAI GTCTC 3 cut(s) 55, 190, 1363
BsmFI GGGAC 2 cut(s) 224, 531
BsnI GGCC 3 cut(s) 85, 190, 1288
Bso31I GGTCTC 1 cut(s) 55
BsoBI CYCGRG 2 cut(s) 162, 426
Bsp119I TTCGAA 1 cut(s) 1155
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 5 cut(s) 250, 259, 501, 915, 924
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 9 cut(s) 20, 331, 599, 701, 710, 749, 811, 1007, 1235
BspANI GGCC 3 cut(s) 85, 190, 1288
BspCNI CTCAG 3 cut(s) 240, 367, 633
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 4 cut(s) 462, 519, 890, 1214
BspPI GGATC 2 cut(s) 258, 496
BspT104I TTCGAA 1 cut(s) 1155
BspTNI GGTCTC 1 cut(s) 55
BsrBI CCGCTC 2 cut(s) 701, 1007
BsrDI GCAATG 1 cut(s) 1185
BsrI ACTGG 6 cut(s) 204, 367, 518, 538, 931, 1214
BssECI CCNNGG 5 cut(s) 80, 191, 884, 906, 1000
BssMI GATC 5 cut(s) 250, 259, 501, 915, 924
BssT1I CCWWGG 3 cut(s) 191, 884, 906
Bst4CI ACNGT 2 cut(s) 305, 1027
BstAPI GCANNNNNTGC 1 cut(s) 1299
BstBI TTCGAA 1 cut(s) 1155
BstC8I GCNNGC 3 cut(s) 708, 1336, 1340
BstDEI CTNAG 4 cut(s) 227, 375, 641, 1373
BstDSI CCRYGG 2 cut(s) 80, 191
BstEII GGTNACC 1 cut(s) 1230
BstF5I GGATG 2 cut(s) 16, 576
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 5 cut(s) 253, 262, 504, 918, 927
BstMAI GTCTC 3 cut(s) 55, 190, 1363
BstMBI GATC 5 cut(s) 250, 259, 501, 915, 924
BstMCI CGRYCG 1 cut(s) 1011
BstMWI GCNNNNNNNGC 5 cut(s) 403, 460, 707, 1029, 1299
BstPI GGTNACC 1 cut(s) 1230
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 269
BstV2I GAAGAC 3 cut(s) 223, 643, 784
BstX2I RGATCY 2 cut(s) 250, 915
BstXI CCANNNNNNTGG 1 cut(s) 1064
BstYI RGATCY 2 cut(s) 250, 915
BsuRI GGCC 3 cut(s) 85, 190, 1288
BtgI CCRYGG 2 cut(s) 80, 191
BtgZI GCGATG 1 cut(s) 98
BtsCI GGATG 2 cut(s) 16, 576
BtsIMutI CAGTG 4 cut(s) 511, 531, 938, 1207
Cac8I GCNNGC 3 cut(s) 708, 1336, 1340
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 301, 518, 997
Csp6I GTAC 2 cut(s) 790, 1028
CviAII CATG 6 cut(s) 11, 59, 192, 954, 1020, 1161
CviQI GTAC 2 cut(s) 790, 1028
DdeI CTNAG 4 cut(s) 227, 375, 641, 1373
DpnI GATC 5 cut(s) 252, 261, 503, 917, 926
DpnII GATC 5 cut(s) 250, 259, 501, 915, 924
EciI GGCGGA 3 cut(s) 9, 614, 764
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 3 cut(s) 191, 884, 906
Eco24I GRGCYC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 3 cut(s) 301, 518, 997
Eco53kI GAGCTC 1 cut(s) 226
Eco88I CYCGRG 2 cut(s) 162, 426
Eco91I GGTNACC 1 cut(s) 1230
EcoICRI GAGCTC 1 cut(s) 226
EcoO109I RGGNCCY 2 cut(s) 518, 997
EcoO65I GGTNACC 1 cut(s) 1230
EcoT14I CCWWGG 3 cut(s) 191, 884, 906
EcoT38I GRGCYC 1 cut(s) 228
ErhI CCWWGG 3 cut(s) 191, 884, 906
FaeI CATG 6 cut(s) 14, 62, 195, 957, 1023, 1164
FaqI GGGAC 2 cut(s) 224, 531
FatI CATG 6 cut(s) 10, 58, 191, 953, 1019, 1160
FbaI TGATCA 1 cut(s) 259
FokI GGATG 2 cut(s) 3, 583
FriOI GRGCYC 1 cut(s) 228
FspBI CTAG 2 cut(s) 354, 885
GlaI GCGC 1 cut(s) 450
GsaI CCCAGC 2 cut(s) 458, 480
GsuI CTGGAG 2 cut(s) 333, 555
HaeIII GGCC 3 cut(s) 85, 190, 1288
HapII CCGG 3 cut(s) 289, 487, 1062
HhaI GCGC 1 cut(s) 451
Hin1II CATG 6 cut(s) 14, 62, 195, 957, 1023, 1164
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 648
HindII GTYRAC 1 cut(s) 648
HinfI GANTC 9 cut(s) 27, 141, 313, 344, 544, 816, 961, 1085, 1202
HpaII CCGG 3 cut(s) 289, 487, 1062
HphI GGTGA 4 cut(s) 97, 196, 598, 1224
Hpy166II GTNNAC 1 cut(s) 648
Hpy188I TCNGA 7 cut(s) 259, 376, 560, 848, 924, 1004, 1117
Hpy188III TCNNGA 3 cut(s) 59, 796, 867
Hpy8I GTNNAC 1 cut(s) 648
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 7 cut(s) 292, 334, 583, 601, 689, 1162, 1270
HpyCH4III ACNGT 2 cut(s) 305, 1027
HpyCH4IV ACGT 1 cut(s) 1072
HpyCH4V TGCA 9 cut(s) 4, 827, 957, 1023, 1077, 1178, 1293, 1302, 1338
HpyF10VI GCNNNNNNNGC 5 cut(s) 403, 460, 707, 1029, 1299
HpyF3I CTNAG 4 cut(s) 227, 375, 641, 1373
HpySE526I ACGT 1 cut(s) 1072
Hsp92II CATG 6 cut(s) 14, 62, 195, 957, 1023, 1164
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 5 cut(s) 250, 259, 501, 915, 924
LmnI GCTCC 9 cut(s) 460, 536, 698, 703, 715, 738, 888, 986, 1004
MaeI CTAG 2 cut(s) 354, 885
MaeII ACGT 1 cut(s) 1072
MaeIII GTNAC 2 cut(s) 977, 1230
MalI GATC 5 cut(s) 252, 261, 503, 917, 926
MbiI CCGCTC 2 cut(s) 701, 1007
MboI GATC 5 cut(s) 250, 259, 501, 915, 924
MflI RGATCY 2 cut(s) 250, 915
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 245
MlyI GAGTC 3 cut(s) 307, 338, 1196
MmeI TCCRAC 2 cut(s) 341, 538
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 2 cut(s) 912, 1103
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 2 cut(s) 130, 454
MspI CCGG 3 cut(s) 289, 487, 1062
MspR9I CCNGG 1 cut(s) 488
MwoI GCNNNNNNNGC 5 cut(s) 403, 460, 707, 1029, 1299
NciI CCSGG 1 cut(s) 488
NcoI CCATGG 1 cut(s) 191
NdeII GATC 5 cut(s) 250, 259, 501, 915, 924
NlaIII CATG 6 cut(s) 14, 62, 195, 957, 1023, 1164
NlaIV GGNNCC 4 cut(s) 462, 519, 890, 1214
NmuCI GTSAC 2 cut(s) 977, 1230
NspV TTCGAA 1 cut(s) 1155
PaeR7I CTCGAG 1 cut(s) 426
PagI TCATGA 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 6 cut(s) 27, 141, 544, 816, 961, 1085
PleI GAGTC 3 cut(s) 307, 338, 1196
PpsI GAGTC 3 cut(s) 307, 338, 1196
PpuMI RGGWCCY 2 cut(s) 518, 997
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 2 cut(s) 518, 997
PspEI GGTNACC 1 cut(s) 1230
PspFI CCCAGC 2 cut(s) 454, 476
PspN4I GGNNCC 4 cut(s) 462, 519, 890, 1214
PspPI GGNCC 3 cut(s) 301, 518, 997
PspPPI RGGWCCY 2 cut(s) 518, 997
PspXI VCTCGAGB 1 cut(s) 426
PsuI RGATCY 2 cut(s) 250, 915
PvuII CAGCTG 2 cut(s) 130, 454
RsaI GTAC 2 cut(s) 791, 1029
RsaNI GTAC 2 cut(s) 790, 1028
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 912, 1103
Sau3AI GATC 5 cut(s) 250, 259, 501, 915, 924
Sau96I GGNCC 3 cut(s) 301, 518, 997
SchI GAGTC 3 cut(s) 307, 338, 1196
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 1 cut(s) 228
SfcI CTRYAG 1 cut(s) 269
Sfr274I CTCGAG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 1155
SinI GGWCC 3 cut(s) 301, 518, 997
SlaI CTCGAG 1 cut(s) 426
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 426, 1366
SmoI CTYRAG 2 cut(s) 426, 1366
Sse9I AATT 1 cut(s) 245
SsiI CCGC 9 cut(s) 20, 331, 599, 701, 710, 749, 811, 1007, 1235
SspMI CTAG 2 cut(s) 354, 885
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 3 cut(s) 191, 884, 906
TaaI ACNGT 2 cut(s) 305, 1027
TaiI ACGT 1 cut(s) 1075
TaqI TCGA 5 cut(s) 25, 139, 427, 866, 1155
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 789
TauI GCSGC 2 cut(s) 334, 814
TfiI GAWTC 6 cut(s) 27, 141, 544, 816, 961, 1085
Tru1I TTAA 2 cut(s) 912, 1103
Tru9I TTAA 2 cut(s) 912, 1103
TscAI CASTG 4 cut(s) 518, 538, 938, 1214
TseFI GTSAC 2 cut(s) 977, 1230
Tsp45I GTSAC 2 cut(s) 977, 1230
TspDTI ATGAA 2 cut(s) 32, 942
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 4 cut(s) 518, 538, 938, 1214
VpaK11BI GGWCC 3 cut(s) 301, 518, 997
XhoI CTCGAG 1 cut(s) 426
XmaJI CCTAGG 1 cut(s) 884
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 2 cut(s) 354, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.