Rorug02G0277500

HB1, ASXL, restriction endonuclease HTH domain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
29867102 .. 29869915
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0277500.1

Sequence Viewer

Length: 1572 bp
ATGGAAGTAACAGTGGCTACCTGGGCAGCTCTGAGCCTTGTCTTTGTTAGCTTAATAGCAAGATGGGTGTGGGGTGTGCTGGATTGGTTGTGGTTTAAGCCAAAGAAGCTAGAAAGATTGCTGAGAGAGCAAGGCCTTAAAGGAAACTCCTACAGGTTTATGTATGGAGACTCGAAGGTGACCGCTAACCTGCTCAAACAAGCATCATCTAAACCCATGAACCTGTCAACCTCCCATGACATAGTAGGACGAGTCACCCCTTTCGATGAGCAAACCATAAAAACTTATGGTAAGGACTCTTTTGTTTGGATTGGCACCTCACCAAGGGTGAACATAATGAATCTAGAAGATTTGAAAGCTGTCCTCACAAAAATGGATAATTTTCCGAAACCAGAATCAAGCCCACTCATTAAGTTGCTAGCACAAGGTATTGCAGTCTATGAAGGTGAGAAATGGGTTAAGCACAGAAGGATTATCAACCCTACATTCCATGTAGAGAAGCTAAAGCGTATGTTACCGGCATTCTATGAAAGTTGTGATGATATGATTAAGGAATGGGAGAGGTCAGTGTCCAAAGGGGGTTTATCATGTGAGTTGGATGTCTTCCCTTCTCTTCAACATTTGACGGCTGATGTGATTTCTCGAACAGCATTTGGAAGTAGCTATCAAGAAGGGAGGAAAATATTTGAACTCCTAAAAGAACAGACAGGATATGCATTAAAAACCGCACATACTATTTACATTCCAGGATGGAGGTTTGTACCAACTAAGATGAACAAGAAGATGAAGCAAATTGACAAAGAAATAAGGGGTTTACTCAAGGGTATTATAATTAAAAGAGAGCAGGCCATTAAGGCAGGTGAAACCACTAAAGATGACTTATTAGGTGCACTTCTGGAGTCAAGCTTGAATGACATTCAGGGACATGGGAAGAACAACAAAAACGTTGGGATGAGTATTGAAGATGTAATTGAGGAGTGTAAACTGTTTTACTTTGCTGGGCAAGAGACCACTTCAGTGTTGCTGGTTTGGACGATGATTTTACTTAGTCAAAATCAGAATTGGCAAGACCGAGCAAGACAAGAGATTCTGCAAGTCTTTGGAAGCAACAAGCCAGACTTTGAGGGCCTAACTCACTTGAAAGTTGTAACAATGATTTTACTTGAAGTTCTTCGACTATACCCACCACTGGTTATGATGTCTCGAATCGTTCACAAGAAAACACAACTTACAAAATTCTCATTGCCAGCTGGAGTCGAAGTCGGCTTACCTACACTGCTCATTCACCACGATAAGGAACTGTGGGGTGATGATGCAAACGAGTTCAAGCCAGAGAGGTTTTCTGAAGGAGTTTCTAAGGCAACAAAGAACCGACTCTCGTTCTTCCCATTTGGAGCCGGTCCTCGGATCTGCGTTGGCCAGAACTTTGCCATGATAGAAGCGAAACTGGCCTTATCATTGATCTTGCAACACTTCACTTTTGAGCTTTCTCCATCTTATACTCATGCTCCTTCCTCACTTTTCATTATTCAACCACAGTATGGTGCTCCAATCATTTTACATAAGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

59.52

Weight (kDa)

9.29

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 91 - 499 3.7e-88 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
AarI CACCTGC 1 cut(s) 848
Acc36I ACCTGC 2 cut(s) 198, 848
AccB1I GGYRCC 1 cut(s) 314
AccB7I CCANNNNNTGG 1 cut(s) 1541
AciI CCGC 2 cut(s) 183, 726
AclI AACGTT 1 cut(s) 945
AclWI GGATC 1 cut(s) 1415
AcoI YGGCCR 1 cut(s) 1417
AcsI RAATTY 1 cut(s) 1235
AcuI CTGAAG 2 cut(s) 999, 1365
AfaI GTAC 1 cut(s) 762
AfiI CCNNNNNNNGG 5 cut(s) 324, 1189, 1294, 1404, 1541
AgsI TTSAA 9 cut(s) 355, 617, 689, 910, 962, 1141, 1166, 1327, 1532
AjnI CCWGG 2 cut(s) 20, 745
AleI CACNNNNGTG 1 cut(s) 1016
AluBI AGCT 9 cut(s) 29, 51, 109, 359, 502, 663, 906, 1250, 1486
AluI AGCT 9 cut(s) 29, 51, 109, 359, 502, 663, 906, 1250, 1486
Alw21I GWGCWC 2 cut(s) 892, 1549
Alw26I GTCTC 3 cut(s) 162, 1001, 1206
Alw44I GTGCAC 1 cut(s) 888
AlwI GGATC 1 cut(s) 1415
AoxI GGCC 5 cut(s) 133, 846, 1126, 1417, 1449
ApaLI GTGCAC 1 cut(s) 888
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 1235
Asp700I GAANNNNTTC 1 cut(s) 1170
AspS9I GGNCC 2 cut(s) 1126, 1400
AsuHPI GGTGA 8 cut(s) 190, 247, 312, 340, 458, 872, 1277, 1319
AsuNHI GCTAGC 1 cut(s) 418
AvaII GGWCC 1 cut(s) 1400
BaeGI GKGCMC 1 cut(s) 892
BalI TGGCCA 1 cut(s) 1419
BanI GGYRCC 1 cut(s) 314
BarI GAAGNNNNNNTAC 2 cut(s) 1251, 1283
BbsI GAAGAC 1 cut(s) 595
Bbv12I GWGCWC 2 cut(s) 892, 1549
BbvI GCAGC 1 cut(s) 38
BccI CCATC 3 cut(s) 57, 744, 1501
BceAI ACGGC 1 cut(s) 642
BciT130I CCWGG 2 cut(s) 22, 747
BcoDI GTCTC 3 cut(s) 162, 1001, 1206
BfaI CTAG 3 cut(s) 110, 344, 419
BfmI CTRYAG 1 cut(s) 151
BfuAI ACCTGC 2 cut(s) 198, 848
BglI GCCNNNNNGGC 1 cut(s) 854
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 22, 747
Bme18I GGWCC 1 cut(s) 1400
BmgT120I GGNCC 2 cut(s) 1126, 1400
BmiI GGNNCC 2 cut(s) 316, 1396
BmrFI CCNGG 2 cut(s) 22, 747
BmsI GCATC 2 cut(s) 212, 1303
BmtI GCTAGC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 595
BpmI CTGGAG 2 cut(s) 917, 1272
BpuEI CTTGAG 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 1001
BsaJI CCNNGG 3 cut(s) 21, 323, 1403
BsaXI ACNNNNNCTCC 4 cut(s) 1245, 1275, 1492, 1522
Bsc4I CCNNNNNNNGG 5 cut(s) 324, 1189, 1294, 1404, 1541
Bse118I RCCGGY 2 cut(s) 517, 1397
Bse1I ACTGG 2 cut(s) 1194, 1452
Bse3DI GCAATG 1 cut(s) 1241
BseBI CCWGG 2 cut(s) 22, 747
BseDI CCNNGG 3 cut(s) 21, 323, 1403
BseGI GGATG 3 cut(s) 604, 755, 957
BseLI CCNNNNNNNGG 5 cut(s) 324, 1189, 1294, 1404, 1541
BseMI GCAATG 1 cut(s) 1241
BseMII CTCAG 2 cut(s) 23, 113
BseNI ACTGG 2 cut(s) 1194, 1452
BseRI GAGGAG 1 cut(s) 989
BseSI GKGCMC 1 cut(s) 892
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 998
BshFI GGCC 5 cut(s) 135, 848, 1128, 1419, 1451
BshNI GGYRCC 1 cut(s) 314
BsiHKAI GWGCWC 2 cut(s) 892, 1549
BsiSI CCGG 2 cut(s) 518, 1398
BslFI GGGAC 1 cut(s) 936
BslI CCNNNNNNNGG 5 cut(s) 324, 1189, 1294, 1404, 1541
BsmAI GTCTC 3 cut(s) 162, 1001, 1206
BsmFI GGGAC 1 cut(s) 936
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 5 cut(s) 135, 848, 1128, 1419, 1451
Bso31I GGTCTC 1 cut(s) 1001
Bsp1286I GDGCHC 2 cut(s) 892, 1549
Bsp143I GATC 2 cut(s) 1407, 1461
BspACI CCGC 2 cut(s) 183, 726
BspANI GGCC 5 cut(s) 135, 848, 1128, 1419, 1451
BspCNI CTCAG 2 cut(s) 24, 114
BspLI GGNNCC 2 cut(s) 316, 1396
BspMI ACCTGC 2 cut(s) 198, 848
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 1 cut(s) 1415
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 1001
BsrDI GCAATG 1 cut(s) 1241
BsrFI RCCGGY 2 cut(s) 517, 1397
BsrI ACTGG 2 cut(s) 1194, 1452
BssAI RCCGGY 2 cut(s) 517, 1397
BssECI CCNNGG 3 cut(s) 21, 323, 1403
BssMI GATC 2 cut(s) 1407, 1461
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 22, 747
Bst4CI ACNGT 4 cut(s) 13, 987, 1302, 1539
Bst6I CTCTTC 1 cut(s) 618
BstC8I GCNNGC 3 cut(s) 420, 846, 1248
BstDEI CTNAG 5 cut(s) 32, 122, 768, 1046, 1356
BstEII GGTNACC 1 cut(s) 178
BstENI CCTNNNNNAGG 1 cut(s) 322
BstF5I GGATG 3 cut(s) 604, 755, 957
BstKTI GATC 2 cut(s) 1410, 1464
BstMAI GTCTC 3 cut(s) 162, 1001, 1206
BstMBI GATC 2 cut(s) 1407, 1461
BstMWI GCNNNNNNNGC 5 cut(s) 23, 106, 127, 854, 1448
BstNI CCWGG 2 cut(s) 22, 747
BstPI GGTNACC 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 20, 745
BstSFI CTRYAG 1 cut(s) 151
BstSLI GKGCMC 1 cut(s) 892
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 1 cut(s) 1407
BstYI RGATCY 1 cut(s) 1407
BsuRI GGCC 5 cut(s) 135, 848, 1128, 1419, 1451
BtsCI GGATG 3 cut(s) 604, 755, 957
BtsI GCAGTG 1 cut(s) 1274
BtsIMutI CAGTG 5 cut(s) 18, 573, 1023, 1187, 1274
BveI ACCTGC 2 cut(s) 198, 848
Cac8I GCNNGC 3 cut(s) 420, 846, 1248
Cfr10I RCCGGY 2 cut(s) 517, 1397
Cfr13I GGNCC 2 cut(s) 1126, 1400
Csp6I GTAC 1 cut(s) 761
CviAII CATG 7 cut(s) 217, 236, 491, 588, 926, 1432, 1505
CviQI GTAC 1 cut(s) 761
DdeI CTNAG 5 cut(s) 32, 122, 768, 1046, 1356
DpnI GATC 2 cut(s) 1409, 1463
DpnII GATC 2 cut(s) 1407, 1461
EaeI YGGCCR 1 cut(s) 1417
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 1001
Eco47I GGWCC 1 cut(s) 1400
Eco57I CTGAAG 2 cut(s) 999, 1365
Eco91I GGTNACC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 1126
EcoO65I GGTNACC 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 20, 745
EcoT14I CCWWGG 1 cut(s) 323
EcoT22I ATGCAT 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 7 cut(s) 220, 239, 494, 591, 929, 1435, 1508
FalI AAGNNNNNCTT 2 cut(s) 1103, 1135
FaqI GGGAC 1 cut(s) 936
FatI CATG 7 cut(s) 216, 235, 490, 587, 925, 1431, 1504
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 3 cut(s) 611, 762, 964
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 3 cut(s) 110, 344, 419
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 1002
GsuI CTGGAG 2 cut(s) 917, 1272
HaeIII GGCC 5 cut(s) 135, 848, 1128, 1419, 1451
HapII CCGG 2 cut(s) 518, 1398
Hin1II CATG 7 cut(s) 220, 239, 494, 591, 929, 1435, 1508
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 904
HpaII CCGG 2 cut(s) 518, 1398
HphI GGTGA 8 cut(s) 190, 247, 312, 340, 458, 872, 1277, 1319
Hpy166II GTNNAC 6 cut(s) 228, 331, 815, 890, 983, 1213
Hpy188I TCNGA 5 cut(s) 33, 387, 1059, 1345, 1407
Hpy188III TCNNGA 5 cut(s) 344, 642, 668, 896, 1203
Hpy8I GTNNAC 6 cut(s) 228, 331, 815, 890, 983, 1213
HpyAV CCTTC 7 cut(s) 169, 437, 462, 618, 665, 1340, 1521
HpyCH4III ACNGT 4 cut(s) 13, 987, 1302, 1539
HpyCH4IV ACGT 1 cut(s) 945
HpyCH4V TGCA 6 cut(s) 434, 716, 890, 1093, 1316, 1468
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 106, 127, 854, 1448
HpyF3I CTNAG 5 cut(s) 32, 122, 768, 1046, 1356
HpySE526I ACGT 1 cut(s) 945
Hsp92II CATG 7 cut(s) 220, 239, 494, 591, 929, 1435, 1508
Kzo9I GATC 2 cut(s) 1407, 1461
LmnI GCTCC 3 cut(s) 1394, 1513, 1552
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 212, 1303
MaeI CTAG 3 cut(s) 110, 344, 419
MaeII ACGT 1 cut(s) 945
MaeIII GTNAC 5 cut(s) 7, 178, 253, 513, 1147
MalI GATC 2 cut(s) 1409, 1463
MboI GATC 2 cut(s) 1407, 1461
MboII GAAGA 8 cut(s) 359, 595, 605, 793, 943, 974, 1163, 1375
MflI RGATCY 1 cut(s) 1407
MhlI GDGCHC 2 cut(s) 892, 1549
MlsI TGGCCA 1 cut(s) 1419
MluCI AATT 6 cut(s) 379, 792, 831, 969, 1060, 1235
MluNI TGGCCA 1 cut(s) 1419
MlyI GAGTC 6 cut(s) 164, 261, 290, 908, 1263, 1368
MmeI TCCRAC 1 cut(s) 576
Mox20I TGGCCA 1 cut(s) 1419
Mph1103I ATGCAT 1 cut(s) 718
MroXI GAANNNNTTC 1 cut(s) 1170
MscI TGGCCA 1 cut(s) 1419
MslI CAYNNNNRTG 2 cut(s) 371, 1016
Msp20I TGGCCA 1 cut(s) 1419
MspA1I CMGCKG 1 cut(s) 1250
MspI CCGG 2 cut(s) 518, 1398
MspR9I CCNGG 2 cut(s) 22, 747
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 2 cut(s) 22, 747
MwoI GCNNNNNNNGC 5 cut(s) 23, 106, 127, 854, 1448
NdeII GATC 2 cut(s) 1407, 1461
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 7 cut(s) 220, 239, 494, 591, 929, 1435, 1508
NlaIV GGNNCC 2 cut(s) 316, 1396
NmuCI GTSAC 2 cut(s) 178, 253
NsiI ATGCAT 1 cut(s) 718
OliI CACNNNNGTG 1 cut(s) 1016
PaqCI CACCTGC 1 cut(s) 848
PceI AGGCCT 1 cut(s) 135
PctI GAATGC 1 cut(s) 521
PdmI GAANNNNTTC 1 cut(s) 1170
PfeI GAWTC 4 cut(s) 340, 395, 1087, 1206
PflMI CCANNNNNTGG 1 cut(s) 1541
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 6 cut(s) 164, 260, 290, 907, 1262, 1368
PpsI GAGTC 6 cut(s) 164, 260, 290, 907, 1262, 1368
PsiI TTATAA 1 cut(s) 830
Psp1406I AACGTT 1 cut(s) 945
Psp6I CCWGG 2 cut(s) 20, 745
PspEI GGTNACC 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 998
PspGI CCWGG 2 cut(s) 20, 745
PspN4I GGNNCC 2 cut(s) 316, 1396
PspPI GGNCC 2 cut(s) 1126, 1400
PsuI RGATCY 1 cut(s) 1407
PvuII CAGCTG 1 cut(s) 1250
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
RseI CAYNNNNRTG 2 cut(s) 371, 1016
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 2 cut(s) 1407, 1461
Sau96I GGNCC 2 cut(s) 1126, 1400
SchI GAGTC 6 cut(s) 164, 261, 290, 908, 1263, 1368
ScrFI CCNGG 2 cut(s) 22, 747
SduI GDGCHC 2 cut(s) 892, 1549
SfaNI GCATC 2 cut(s) 212, 1303
SfcI CTRYAG 1 cut(s) 151
SinI GGWCC 1 cut(s) 1400
SmiMI CAYNNNNRTG 2 cut(s) 371, 1016
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
Sse9I AATT 6 cut(s) 379, 792, 831, 969, 1060, 1235
SseBI AGGCCT 1 cut(s) 135
SsiI CCGC 2 cut(s) 183, 726
SspI AATATT 1 cut(s) 684
SspMI CTAG 3 cut(s) 110, 344, 419
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 2 cut(s) 20, 745
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 4 cut(s) 13, 987, 1302, 1539
TaiI ACGT 1 cut(s) 948
TaqI TCGA 6 cut(s) 173, 264, 643, 1174, 1204, 1257
TaqII GACCGA 1 cut(s) 1086
TasI AATT 6 cut(s) 379, 792, 831, 969, 1060, 1235
TfiI GAWTC 4 cut(s) 340, 395, 1087, 1206
TscAI CASTG 5 cut(s) 18, 573, 1023, 1194, 1281
TseFI GTSAC 2 cut(s) 178, 253
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 2 cut(s) 178, 253
TspDTI ATGAA 7 cut(s) 233, 353, 456, 543, 788, 800, 1513
TspRI CASTG 5 cut(s) 18, 573, 1023, 1194, 1281
Van91I CCANNNNNTGG 1 cut(s) 1541
VneI GTGCAC 1 cut(s) 888
VpaK11BI GGWCC 1 cut(s) 1400
XagI CCTNNNNNAGG 1 cut(s) 322
XapI RAATTY 1 cut(s) 1235
XbaI TCTAGA 1 cut(s) 343
XmnI GAANNNNTTC 1 cut(s) 1170
XspI CTAG 3 cut(s) 110, 344, 419
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.