Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002907

Physical Location & Seq

Genomic Coordinates Forward (+)

14709118 .. 14709336

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG168700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTGGTTTTGCCACCGGAGATTGAAGGACGGTAAGCCGACGCCAACAACCGGGAAGCGGCAGAGGAAGGACTCTCCGGCTGGAACGACTGGAGTGGTTTCTGAGGAAATGGTGGGGAGTGAGCCGGCGCCGCAGCAGTTGATAATAGAGGCTCGAGCTATTGCTTTTGTGGAGGCGCAGCTGGAGGAACCATTCAGGGAGGATGGGCTTGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

72

Amino Acids

7.97

Weight (kDa)

5.76

Isoelectric Point (pI)

72.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44180 AT5G44180 AT5G44180
fragaria_vesca	FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700 FvH4_6g26700
rosa_chinensis	RchiOBHm_Chr2g0127081 RchiOBHm_Chr2g0127091
rosa_laevigata	RLG00000018980 RLG00000023032
rosa_multiflora	Rmu_sc0000023.1_g000012 Rmu_sc0008093.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026470 Rroxscaffold_2G00115760 Rroxscaffold_2G00116210 Rroxscaffold_5G00354400
rosa_rugosa	Rorug02G0277500 Rorug06G0129600 Rorug07G0322700
rosa_samantha	Rh1BG059500 Rh2AG328000 Rh2BG338000 Rh2CG315100 Rh2DG355100 Rh3DG168700 Rh4AG158500 Rh4DG153200 Rh7AG477100
rosa_wichuraiana	Rw2G026610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AciI	CCGC	2 cut(s)	58, 131
AcsI	RAATTY	1 cut(s)	213
AcyI	GRCGYC	2 cut(s)	41, 128
AfiI	CCNNNNNNNGG	2 cut(s)	50, 57
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	2 cut(s)	158, 181
AluI	AGCT	2 cut(s)	158, 181
Ama87I	CYCGRG	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	133, 178
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	130, 178
AsuC2I	CCSGG	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	153
BanI	GGYRCC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	145, 190
BccI	CCATC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	131
BisI	GCNGC	4 cut(s)	59, 131, 134, 179
BlsI	GCNGC	4 cut(s)	60, 132, 135, 180
Bme1390I	CCNGG	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	129, 189
BmrFI	CCNGG	1 cut(s)	52
BpmI	CTGGAG	2 cut(s)	111, 203
BpuMI	CCSGG	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	41, 128
BsaWI	WCCGGW	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 57
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	50, 57
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	145, 190
BshNI	GGYRCC	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	4 cut(s)	16, 51, 77, 125
BslI	CCNNNNNNNGG	2 cut(s)	50, 57
BsoBI	CYCGRG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	58, 131
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	129, 189
BspT107I	GGYRCC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	124
BssNI	GRCGYC	2 cut(s)	41, 128
Bst4CI	ACNGT	1 cut(s)	32
BstACI	GRCGYC	2 cut(s)	41, 128
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	130, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	145, 190
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	2 cut(s)	130, 178
Cfr10I	RCCGGY	1 cut(s)	124
CseI	GACGC	1 cut(s)	49
CviJI	RGCY	7 cut(s)	37, 80, 124, 152, 158, 181, 208
CviKI_1	RGCY	7 cut(s)	37, 80, 124, 152, 158, 181, 208
DdeI	CTNAG	1 cut(s)	102
DinI	GGCGCC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	59, 131, 134, 179
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	4 cut(s)	59, 131, 134, 179
GlaI	GCGC	2 cut(s)	129, 177
GluI	GCNGC	4 cut(s)	59, 131, 134, 179
GsuI	CTGGAG	2 cut(s)	111, 203
HaeII	RGCGCY	1 cut(s)	131
HapII	CCGG	4 cut(s)	16, 51, 77, 125
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	130, 178
Hin1I	GRCGYC	2 cut(s)	41, 128
Hin6I	GCGC	2 cut(s)	128, 176
HinP1I	GCGC	2 cut(s)	128, 176
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	4 cut(s)	16, 51, 77, 125
Hpy188I	TCNGA	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	19, 61
HpyCH4III	ACNGT	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	102
Hsp92I	GRCGYC	2 cut(s)	41, 128
HspAI	GCGC	2 cut(s)	128, 176
KasI	GGCGCC	1 cut(s)	127
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
LpnPI	CCDG	8 cut(s)	29, 64, 66, 75, 90, 138, 167, 181
Lsp1109I	GCAGC	2 cut(s)	145, 190
MluCI	AATT	1 cut(s)	213
Mly113I	GGCGCC	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	57, 97, 142, 166, 178, 193
MroNI	GCCGGC	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	4 cut(s)	16, 51, 77, 125
MspR9I	CCNGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	130
NaeI	GCCGGC	1 cut(s)	126
NarI	GGCGCC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	52
NgoMIV	GCCGGC	1 cut(s)	124
NlaIV	GGNNCC	2 cut(s)	129, 189
PaeR7I	CTCGAG	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	60, 132, 135, 180
PleI	GAGTC	1 cut(s)	65
PluTI	GGCGCC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	129, 189
PspXI	VCTCGAGB	1 cut(s)	153
PvuII	CAGCTG	1 cut(s)	181
SatI	GCNGC	4 cut(s)	59, 131, 134, 179
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	2 cut(s)	160, 183
SfoI	GGCGCC	1 cut(s)	129
Sfr274I	CTCGAG	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	213
SsiI	CCGC	2 cut(s)	58, 131
SspDI	GGCGCC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	213
TauI	GCSGC	2 cut(s)	61, 133
TseI	GCWGC	2 cut(s)	133, 178
XapI	RAATTY	1 cut(s)	213
XhoI	CTCGAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.