Rorug06G0129600

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002907
Physical Location & Seq
Forward (+)
18000322 .. 18003528
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0129600.1

Sequence Viewer

Length: 762 bp
ATGAGCACCACCATGCAACACCCCCAGTCGCCATCAATCATCTCCCGGCTACCAATCCCCCTGCACGATGCTGCTCAGAGCAGTACCATGCCCAAGTCGATCCGCATTAACTCTCGCATCCAAACCACCGAGATACTGGCAGATCTCCATCGAAAACTCATCTCCAAAGAAATTTGGGAATTTGCAATGAGAAACCACAGCATCGGCAGCCCCATCACCAATTCCCCCTTCACGGTCAATGGAAAGGAGATCTCTTGCCCCAGCCGCTCACGCAGGCATGACCGGAGGAAAGTTGGGACGGGGATGGCAGCATCCCCATCTCCTTTTCTCACGCCTCGGCCCGAAAAGCGGCGTGGTACTCTTGATTGGAATTCGAATCACAAGGATAAGGATAAGGAAGTTAATGTGCAAGTTGTGCTCAGATGCAGAGTCTATCATATGAAGTGTTTTCGTATTTCAAAACAACCATTACTTCTTCCTCACCAGCTCATCCAGAATTCATATTTCTGCAAGAACCAGAACTTGACTGGAATTAAAGGTTTATCTGAGGTCAAAGTCGATAAGATTTGTGAAGCTGCTGAGAAGATTGTGATAATGAATTTTATGTGTGCTTGCTATCCATCATATCGTTCTTTACATAGGCCAAGTAAAAATGGGACACTTGAAGTTGGGGAAAACAAAATTCTTGATGCTAAAACTGGTTCAGCAAGCAAGAGGCGACGTAGTACCAAGACTGTTAAAAGTGCAGAAATCATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

253

Amino Acids

28.67

Weight (kDa)

10.15

Isoelectric Point (pI)

61.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 267
AciI CCGC 3 cut(s) 103, 265, 349
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 6 cut(s) 171, 179, 370, 496, 598, 681
AfaI GTAC 3 cut(s) 85, 358, 727
AfiI CCNNNNNNNGG 2 cut(s) 232, 348
AgsI TTSAA 2 cut(s) 459, 665
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 2 cut(s) 487, 575
AluI AGCT 2 cut(s) 487, 575
Alw21I GWGCWC 2 cut(s) 8, 420
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 338, 641
ApeKI GCWGC 4 cut(s) 71, 207, 308, 575
ApoI RAATTY 6 cut(s) 171, 179, 370, 496, 598, 681
AspS9I GGNCC 1 cut(s) 339
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 208, 473
AsuII TTCGAA 1 cut(s) 374
Bbv12I GWGCWC 2 cut(s) 8, 420
BbvI GCAGC 4 cut(s) 58, 219, 320, 562
BccI CCATC 6 cut(s) 40, 156, 221, 298, 325, 628
BcnI CCSGG 1 cut(s) 46
BglII AGATCT 2 cut(s) 142, 249
BisI GCNGC 6 cut(s) 72, 208, 265, 309, 350, 576
BlsI GCNGC 6 cut(s) 73, 209, 266, 310, 351, 577
Bme1390I CCNGG 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 6 cut(s) 58, 126, 210, 320, 413, 679
BmuI ACTGGG 1 cut(s) 19
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 348
Bse1I ACTGG 4 cut(s) 25, 141, 532, 703
Bse3DI GCAATG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 4 cut(s) 117, 309, 311, 489
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 232, 348
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 4 cut(s) 89, 433, 537, 570
BseNI ACTGG 4 cut(s) 25, 141, 532, 703
BseXI GCAGC 4 cut(s) 58, 219, 320, 562
BseYI CCCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 47
BshFI GGCC 2 cut(s) 340, 643
BsiHKAI GWGCWC 2 cut(s) 8, 420
BsiSI CCGG 2 cut(s) 46, 283
BslFI GGGAC 2 cut(s) 310, 670
BslI CCNNNNNNNGG 2 cut(s) 232, 348
BsmFI GGGAC 2 cut(s) 310, 670
BsnI GGCC 2 cut(s) 340, 643
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 8, 420
Bsp143I GATC 3 cut(s) 99, 142, 249
BspACI CCGC 3 cut(s) 103, 265, 349
BspANI GGCC 2 cut(s) 340, 643
BspCNI CTCAG 4 cut(s) 88, 432, 538, 571
BspPI GGATC 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 4 cut(s) 25, 141, 532, 703
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 3 cut(s) 99, 142, 249
Bst4CI ACNGT 2 cut(s) 235, 736
BstAPI GCANNNNNTGC 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 275, 613, 709
BstDEI CTNAG 4 cut(s) 75, 419, 546, 579
BstF5I GGATG 4 cut(s) 117, 309, 311, 489
BstKTI GATC 3 cut(s) 102, 145, 252
BstMBI GATC 3 cut(s) 99, 142, 249
BstMWI GCNNNNNNNGC 5 cut(s) 207, 264, 270, 346, 415
BstSCI CCNGG 1 cut(s) 44
BstV1I GCAGC 4 cut(s) 58, 219, 320, 562
BstX2I RGATCY 2 cut(s) 142, 249
BstYI RGATCY 2 cut(s) 142, 249
BsuRI GGCC 2 cut(s) 340, 643
BtsCI GGATG 4 cut(s) 117, 309, 311, 489
Cac8I GCNNGC 3 cut(s) 275, 613, 709
Cfr13I GGNCC 1 cut(s) 339
Csp6I GTAC 3 cut(s) 84, 357, 726
CviAII CATG 3 cut(s) 13, 88, 278
CviJI RGCY 7 cut(s) 49, 210, 264, 340, 487, 575, 643
CviKI_1 RGCY 7 cut(s) 49, 210, 264, 340, 487, 575, 643
CviQI GTAC 3 cut(s) 84, 357, 726
DdeI CTNAG 4 cut(s) 75, 419, 546, 579
DpnI GATC 3 cut(s) 101, 144, 251
DpnII GATC 3 cut(s) 99, 142, 249
EcoRI GAATTC 2 cut(s) 370, 496
FaeI CATG 3 cut(s) 16, 91, 281
FaiI YATR 9 cut(s) 14, 89, 279, 438, 440, 502, 605, 625, 639
FaqI GGGAC 2 cut(s) 310, 670
FatI CATG 3 cut(s) 12, 87, 277
FauNDI CATATG 1 cut(s) 438
Fnu4HI GCNGC 6 cut(s) 72, 208, 265, 309, 350, 576
FokI GGATG 4 cut(s) 104, 298, 316, 476
Fsp4HI GCNGC 6 cut(s) 72, 208, 265, 309, 350, 576
GluI GCNGC 6 cut(s) 72, 208, 265, 309, 350, 576
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 2 cut(s) 340, 643
HapII CCGG 2 cut(s) 46, 283
Hin1II CATG 3 cut(s) 16, 91, 281
HinfI GANTC 2 cut(s) 376, 429
HpaII CCGG 2 cut(s) 46, 283
HphI GGTGA 2 cut(s) 208, 473
Hpy188I TCNGA 3 cut(s) 78, 422, 547
Hpy188III TCNNGA 3 cut(s) 362, 493, 686
Hpy99I CGWCG 1 cut(s) 723
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 235, 736
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 7 cut(s) 16, 64, 185, 409, 426, 510, 746
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 264, 270, 346, 415
HpyF3I CTNAG 4 cut(s) 75, 419, 546, 579
HpySE526I ACGT 1 cut(s) 721
Hsp92II CATG 3 cut(s) 16, 91, 281
Kzo9I GATC 3 cut(s) 99, 142, 249
Lsp1109I GCAGC 4 cut(s) 58, 219, 320, 562
LweI GCATC 6 cut(s) 58, 126, 210, 320, 413, 679
MaeII ACGT 1 cut(s) 721
MalI GATC 3 cut(s) 101, 144, 251
MbiI CCGCTC 1 cut(s) 267
MboI GATC 3 cut(s) 99, 142, 249
MboII GAAGA 2 cut(s) 467, 595
MflI RGATCY 2 cut(s) 142, 249
MhlI GDGCHC 2 cut(s) 8, 420
MluCI AATT 8 cut(s) 171, 179, 220, 370, 496, 531, 598, 681
MlyI GAGTC 1 cut(s) 438
MnlI CCTC 5 cut(s) 279, 345, 489, 541, 708
MseI TTAA 5 cut(s) 108, 402, 534, 738, 760
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 2 cut(s) 46, 283
MspR9I CCNGG 1 cut(s) 46
MwoI GCNNNNNNNGC 5 cut(s) 207, 264, 270, 346, 415
NciI CCSGG 1 cut(s) 46
NdeI CATATG 1 cut(s) 438
NdeII GATC 3 cut(s) 99, 142, 249
NlaIII CATG 3 cut(s) 16, 91, 281
NmeAIII GCCGAG 1 cut(s) 316
NspV TTCGAA 1 cut(s) 374
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 6 cut(s) 73, 209, 266, 310, 351, 577
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 339
PsuI RGATCY 2 cut(s) 142, 249
RsaI GTAC 3 cut(s) 85, 358, 727
RsaNI GTAC 3 cut(s) 84, 357, 726
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 5 cut(s) 108, 402, 534, 738, 760
SatI GCNGC 6 cut(s) 72, 208, 265, 309, 350, 576
Sau3AI GATC 3 cut(s) 99, 142, 249
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 1 cut(s) 438
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 2 cut(s) 8, 420
SetI ASST 5 cut(s) 489, 541, 552, 577, 724
SfaNI GCATC 6 cut(s) 58, 126, 210, 320, 413, 679
SfuI TTCGAA 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 8 cut(s) 171, 179, 220, 370, 496, 531, 598, 681
SsiI CCGC 3 cut(s) 103, 265, 349
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 235, 736
TaiI ACGT 1 cut(s) 724
TaqI TCGA 4 cut(s) 98, 151, 374, 558
TasI AATT 8 cut(s) 171, 179, 220, 370, 496, 531, 598, 681
TauI GCSGC 2 cut(s) 267, 352
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 5 cut(s) 108, 402, 534, 738, 760
Tru9I TTAA 5 cut(s) 108, 402, 534, 738, 760
TseI GCWGC 4 cut(s) 71, 207, 308, 575
TspDTI ATGAA 3 cut(s) 455, 489, 611
XapI RAATTY 6 cut(s) 171, 179, 370, 496, 598, 681
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.