Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004863

Physical Location & Seq

Genomic Coordinates Forward (+)

53841101 .. 53845357

Gene Structure 4257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGTCCCTACCATGGACTATGCACGGAGCCTGTTCGATGCCATGCCTGAAAGAGATCTCTTTCTTTGGAACACCTTGATAAGGGGTTATGCTGATCGAGAACCTTGTCATGAAGCCATAGTTTTTTACAGAAAAATGCATCAAAGGGGTTTATCACCCGATAACTATACTTTTCCTTTTGTAGTTCGGTCTTGTGCGCTGCAATCGGCTTTGAGAGAAGGGAAACAAGTGCATTGTAACATAGTTAAAAATGGGTTTAAGTCTGATGTATTTGTTCAGAGCTCTTTGGTGAGTATGTATACACAGAATGGTGAAACTTTGAATTCAGAGCTTGTTTTTAACGAAATGGTTAGAAGGGTTGAGTGTTTTCGAGACTTGGTGGCTTCAGGTTCCCAACCAAATGTGGTTACACTGGTCAGCATCCTCCCTGCTTGTGCTAGTTTAGAATTTTTGGATTTAGGAAAACTGATTCACTGTCATGGAATTAAAGTTGGAGTTGACTCAGATATGTCATTCATGAATGCTTTGATTGCATTTTATGGTAAGTGTCGGAATCTTGAGACAGCAAGATCTTTATTTGATGGGATGGCAGTAAGAAACCTGGTCTCGTGGAATGCAATGATTGCTGCTTATGAACAGAATAATGCAGGGACGGAGGCAATAAAGCTCTTTCGTAGGATGCAAAATGAAAATGTGGACTATGACTATATCACAATAGTCAGTGTAATTTCAGCCTGTGCTAGCTTGGGTGCATTGAACACTGGGAAATGGTTGCATGAGCTTGTCAAAAGGAAAGGCTTTGGAACCAATGTTTCAGTCACAAAGGCACTCATTGACATGTATGCAAAGTGTGGGAATATTGATCTGGCCAAGAATGTTTTTCAGAAATTGCCTCATAGAAGTGTTGTGTCCTGGACATCTATAATAGGGGCTTGTGCATCTCATGGTCATGGAGATGATGCTCTCATGCTTTTCTCAATGAGGAAAGACCAGGGCATTAAGCCAAATAGTTTCACTTTTACCGCTGTTTTGACCGCTTGTAGGCACTCAGGTCTAGTAGATGAAGGAAGAAAGCATTTTGAGAGCATGATTAAAGACTACTCCCTTGTCCCTGGTGTAGAGCACTATGCTTGTGTAGTTGATCTTCTTGGTCGAGCTGGTTGTTTGTTAGAAGCTTATAAGTTTATTCAGAGGATGCCGGTTGAGCCAGACATTGGTGTCTGGGGAGCTTTACTTAGTGCTTGCAGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

417

Amino Acids

46.52

Weight (kDa)

8.14

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	19 - 65	5e-09	PPR repeat family
PPR_2	PF13041	200 - 247	9.7e-09	PPR repeat family
PPR	PF01535	202 - 232	5.9e-06	PPR repeat
PPR_2	PF13041	301 - 347	1.7e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30210
malus_domestica	MD17G1206900.v1.1
prunus_persica	Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1
pyrus_communis	pycom17g20970
rosa_chinensis	RchiOBHm_Chr2g0136451 RchiOBHm_Chr5g0054651 RchiOBHm_Chr5g0054891
rosa_laevigata	RLG00000034942
rosa_multiflora	Rmu_sc0001998.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025820 Rroxscaffold_1G00025830 Rroxscaffold_1G00026010 Rroxscaffold_1G00026310 Rroxscaffold_1G00026320 Rroxscaffold_2G00108280
rosa_rugosa	Rorug02G0330400 Rorug02G0330500 Rorug05G0287600
rosa_samantha	Rh2AG381500 Rh2AG381600 Rh2BG388200 Rh2BG388300 Rh2CG367800 Rh2CG367900 Rh2DG404600 Rh2DG404700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1179
AasI	GACNNNNNNGTC	1 cut(s)	1217
AccB7I	CCANNNNNTGG	1 cut(s)	1214
AccI	GTMKAC	1 cut(s)	299
AciI	CCGC	2 cut(s)	1023, 1035
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	2 cut(s)	322, 446
AcuI	CTGAAG	1 cut(s)	369
AfiI	CCNNNNNNNGG	4 cut(s)	13, 81, 1041, 1214
AflIII	ACRYGT	1 cut(s)	837
AgsI	TTSAA	2 cut(s)	322, 757
AjnI	CCWGG	4 cut(s)	600, 911, 990, 1111
AluBI	AGCT	8 cut(s)	282, 331, 667, 744, 781, 1157, 1175, 1229
AluI	AGCT	8 cut(s)	282, 331, 667, 744, 781, 1157, 1175, 1229
Alw21I	GWGCWC	2 cut(s)	284, 1125
Alw26I	GTCTC	3 cut(s)	366, 554, 610
AoxI	GGCC	1 cut(s)	867
ApeKI	GCWGC	2 cut(s)	199, 626
ApoI	RAATTY	2 cut(s)	322, 446
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	147, 301, 323
AsuNHI	GCTAGC	1 cut(s)	740
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	869
BanII	GRGCYC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	1128, 1160
BauI	CACGAG	1 cut(s)	607
Bbv12I	GWGCWC	2 cut(s)	284, 1125
BbvI	GCAGC	2 cut(s)	186, 613
BccI	CCATC	2 cut(s)	575, 580
BciT130I	CCWGG	4 cut(s)	602, 913, 992, 1113
BcoDI	GTCTC	3 cut(s)	366, 554, 610
BfaI	CTAG	3 cut(s)	438, 741, 1055
BglII	AGATCT	2 cut(s)	55, 569
BisI	GCNGC	2 cut(s)	200, 627
BlsI	GCNGC	2 cut(s)	201, 628
Bme1390I	CCNGG	4 cut(s)	602, 913, 992, 1113
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	6, 29, 391, 805
BmrFI	CCNGG	4 cut(s)	602, 913, 992, 1113
BmrI	ACTGGG	1 cut(s)	771
BmsI	GCATC	7 cut(s)	28, 148, 429, 669, 947, 949, 1185
BmtI	GCTAGC	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	578
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	3 cut(s)	12, 991, 1111
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 81, 1041, 1214
Bse118I	RCCGGY	1 cut(s)	1198
Bse1I	ACTGG	2 cut(s)	417, 766
Bse3DI	GCAATG	1 cut(s)	624
BseBI	CCWGG	4 cut(s)	602, 913, 992, 1113
BseDI	CCNNGG	3 cut(s)	12, 991, 1111
BseGI	GGATG	4 cut(s)	420, 591, 684, 1200
BseLI	CCNNNNNNNGG	4 cut(s)	13, 81, 1041, 1214
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	516, 1062
BseNI	ACTGG	2 cut(s)	417, 766
BseXI	GCAGC	2 cut(s)	186, 613
BshFI	GGCC	1 cut(s)	869
BsiHKAI	GWGCWC	2 cut(s)	284, 1125
BsiSI	CCGG	1 cut(s)	1199
BslFI	GGGAC	2 cut(s)	664, 1094
BslI	CCNNNNNNNGG	4 cut(s)	13, 81, 1041, 1214
BsmAI	GTCTC	3 cut(s)	366, 554, 610
BsmFI	GGGAC	2 cut(s)	664, 1094
BsmI	GAATGC	2 cut(s)	526, 619
BsnI	GGCC	1 cut(s)	869
Bso31I	GGTCTC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	284, 1125
Bsp143I	GATC	5 cut(s)	55, 94, 569, 862, 1141
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	1023, 1035
BspANI	GGCC	1 cut(s)	869
BspCNI	CTCAG	2 cut(s)	515, 1061
BspHI	TCATGA	2 cut(s)	109, 516
BspLI	GGNNCC	4 cut(s)	6, 29, 391, 805
BspOI	GCTAGC	1 cut(s)	744
BspTNI	GGTCTC	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	1198
BsrI	ACTGG	2 cut(s)	417, 766
BssAI	RCCGGY	1 cut(s)	1198
BssECI	CCNNGG	3 cut(s)	12, 991, 1111
BssMI	GATC	5 cut(s)	55, 94, 569, 862, 1141
BssNAI	GTATAC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	607
BssT1I	CCWWGG	1 cut(s)	12
Bst1107I	GTATAC	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	607
Bst2UI	CCWGG	4 cut(s)	602, 913, 992, 1113
Bst4CI	ACNGT	1 cut(s)	476
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	742, 1243
BstDEI	CTNAG	3 cut(s)	502, 1048, 1235
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstF5I	GGATG	4 cut(s)	420, 591, 684, 1200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	5 cut(s)	58, 97, 572, 865, 1144
BstMAI	GTCTC	3 cut(s)	366, 554, 610
BstMBI	GATC	5 cut(s)	55, 94, 569, 862, 1141
BstMWI	GCNNNNNNNGC	3 cut(s)	530, 623, 1204
BstNI	CCWGG	4 cut(s)	602, 913, 992, 1113
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	4 cut(s)	600, 911, 990, 1111
BstV1I	GCAGC	2 cut(s)	186, 613
BstX2I	RGATCY	2 cut(s)	55, 569
BstYI	RGATCY	2 cut(s)	55, 569
BstZ17I	GTATAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	869
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	420, 591, 684, 1200
BtsIMutI	CAGTG	4 cut(s)	410, 472, 727, 759
Cac8I	GCNNGC	2 cut(s)	742, 1243
CciI	TCATGA	2 cut(s)	109, 516
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	1198
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	600
DdeI	CTNAG	3 cut(s)	502, 1048, 1235
DpnI	GATC	5 cut(s)	57, 96, 571, 864, 1143
DpnII	GATC	5 cut(s)	55, 94, 569, 862, 1141
DrdI	GACNNNNNNGTC	1 cut(s)	1217
DseDI	GACNNNNNNGTC	1 cut(s)	1217
EaeI	YGGCCR	1 cut(s)	867
Ecl136II	GAGCTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	4 cut(s)	600, 911, 990, 1111
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	12
FaqI	GGGAC	2 cut(s)	664, 1094
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	200, 627
FokI	GGATG	4 cut(s)	407, 598, 691, 1207
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	2 cut(s)	200, 627
FspBI	CTAG	3 cut(s)	438, 741, 1055
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	2 cut(s)	200, 627
HaeIII	GGCC	1 cut(s)	869
HapII	CCGG	1 cut(s)	1199
HhaI	GCGC	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	1 cut(s)	1173
HinfI	GANTC	3 cut(s)	469, 500, 553
HpaII	CCGG	1 cut(s)	1199
HphI	GGTGA	3 cut(s)	147, 301, 323
Hpy166II	GTNNAC	3 cut(s)	300, 499, 697
Hpy188I	TCNGA	7 cut(s)	265, 279, 328, 505, 552, 885, 1191
Hpy188III	TCNNGA	5 cut(s)	98, 110, 371, 517, 557
Hpy8I	GTNNAC	3 cut(s)	300, 499, 697
HpyAV	CCTTC	3 cut(s)	212, 348, 1058
HpyCH4III	ACNGT	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	530, 623, 1204
HpyF3I	CTNAG	3 cut(s)	502, 1048, 1235
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	5 cut(s)	55, 94, 569, 862, 1141
LmnI	GCTCC	2 cut(s)	27, 1226
Lsp1109I	GCAGC	2 cut(s)	186, 613
LweI	GCATC	7 cut(s)	28, 148, 429, 669, 947, 949, 1185
MabI	ACCWGGT	1 cut(s)	600
MaeI	CTAG	3 cut(s)	438, 741, 1055
MaeIII	GTNAC	3 cut(s)	236, 406, 817
MalI	GATC	5 cut(s)	57, 96, 571, 864, 1143
MboI	GATC	5 cut(s)	55, 94, 569, 862, 1141
MboII	GAAGA	2 cut(s)	1080, 1136
MflI	RGATCY	2 cut(s)	55, 569
MhlI	GDGCHC	2 cut(s)	284, 1125
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	5 cut(s)	322, 446, 483, 726, 887
MluNI	TGGCCA	1 cut(s)	869
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	2 cut(s)	472, 530
MnlI	CCTC	5 cut(s)	434, 649, 903, 975, 1185
Mox20I	TGGCCA	1 cut(s)	869
Mph1103I	ATGCAT	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	6 cut(s)	246, 258, 339, 486, 999, 1092
MslI	CAYNNNNRTG	5 cut(s)	477, 836, 900, 948, 954
Msp20I	TGGCCA	1 cut(s)	869
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	1 cut(s)	1199
MspR9I	CCNGG	4 cut(s)	602, 913, 992, 1113
Mva1269I	GAATGC	2 cut(s)	526, 619
MvaI	CCWGG	4 cut(s)	602, 913, 992, 1113
MwoI	GCNNNNNNNGC	3 cut(s)	530, 623, 1204
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	5 cut(s)	55, 94, 569, 862, 1141
NheI	GCTAGC	1 cut(s)	740
NlaIV	GGNNCC	4 cut(s)	6, 29, 391, 805
NmuCI	GTSAC	1 cut(s)	817
NsiI	ATGCAT	1 cut(s)	141
NspI	RCATGY	1 cut(s)	841
PagI	TCATGA	2 cut(s)	109, 516
PciI	ACATGT	1 cut(s)	837
PctI	GAATGC	2 cut(s)	526, 619
PfeI	GAWTC	2 cut(s)	469, 553
PflMI	CCANNNNNTGG	1 cut(s)	1214
PfoI	TCCNGGA	1 cut(s)	911
PkrI	GCNGC	2 cut(s)	201, 628
PleI	GAGTC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	494
PscI	ACATGT	1 cut(s)	837
PsiI	TTATAA	1 cut(s)	1179
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	4 cut(s)	600, 911, 990, 1111
PspGI	CCWGG	4 cut(s)	600, 911, 990, 1111
PspN4I	GGNNCC	4 cut(s)	6, 29, 391, 805
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	55, 569
RseI	CAYNNNNRTG	5 cut(s)	477, 836, 900, 948, 954
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	6 cut(s)	246, 258, 339, 486, 999, 1092
SatI	GCNGC	2 cut(s)	200, 627
Sau3AI	GATC	5 cut(s)	55, 94, 569, 862, 1141
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	4 cut(s)	602, 913, 992, 1113
SduI	GDGCHC	2 cut(s)	284, 1125
SexAI	ACCWGGT	1 cut(s)	600
SfaNI	GCATC	7 cut(s)	28, 148, 429, 669, 947, 949, 1185
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	5 cut(s)	477, 836, 900, 948, 954
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	5 cut(s)	322, 446, 483, 726, 887
SsiI	CCGC	2 cut(s)	1023, 1035
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	3 cut(s)	438, 741, 1055
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	4 cut(s)	600, 911, 990, 1111
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	476
TaqI	TCGA	4 cut(s)	36, 97, 370, 1153
TaqII	GACCGA	1 cut(s)	177
TasI	AATT	5 cut(s)	322, 446, 483, 726, 887
TfiI	GAWTC	2 cut(s)	469, 553
Tru1I	TTAA	6 cut(s)	246, 258, 339, 486, 999, 1092
Tru9I	TTAA	6 cut(s)	246, 258, 339, 486, 999, 1092
TscAI	CASTG	4 cut(s)	417, 479, 727, 766
TseFI	GTSAC	1 cut(s)	817
TseI	GCWGC	2 cut(s)	199, 626
Tsp45I	GTSAC	1 cut(s)	817
TspDTI	ATGAA	6 cut(s)	126, 505, 533, 648, 702, 1077
TspGWI	ACGGA	2 cut(s)	40, 668
TspRI	CASTG	4 cut(s)	417, 479, 727, 766
Van91I	CCANNNNNTGG	1 cut(s)	1214
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	2 cut(s)	322, 446
XceI	RCATGY	1 cut(s)	841
XmiI	GTMKAC	1 cut(s)	299
XspI	CTAG	3 cut(s)	438, 741, 1055
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.