Rroxscaffold_1G00025820

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004863
Physical Location & Seq
Forward (+)
32429381 .. 32429751
371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025820.1

Sequence Viewer

Length: 327 bp
ATGCCTGAAAGAGATGTTTGGAACACCTTGATAAGGGGTTATGCTGATCGGGGACCTTGTCATGAAGCCATAGCTTTGTACAGAAAAATGCATCGAGGTGGTTTTTCACCCGATAACTATACTTTTCCCGTTGTACGTAGTTCGGTCTTGTGCGGTGCAGTCGGCTTTGAGAGAAGGGAAAGAAGTGCATTAGCTCCGGTGAGTATGTATGCACAGAATGGTGAAACTTTGAACTCAGAACTTGTTATTAACGAAATGGTTGAGAAGAACATAATTTCCTGGACTGCAATGATAGCAGGCTATGTGAAAAATGGGTTCTATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

108

Amino Acids

12.22

Weight (kDa)

8.64

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 6 - 35 8.8e-07 PPR repeat
PPR_2 PF13041 6 - 42 8.7e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AfaI GTAC 2 cut(s) 80, 135
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 278
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 2 cut(s) 74, 194
AluI AGCT 2 cut(s) 74, 194
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 3 cut(s) 99, 211, 233
AvaII GGWCC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 249
BsgI GTGCAG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 78
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 78
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 280
BstAUI TGTACA 1 cut(s) 78
BstBAI YACGTR 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 235
BstENI CCTNNNNNAGG 1 cut(s) 31
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstSNI TACGTA 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 298
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 79, 134
CviAII CATG 1 cut(s) 62
CviJI RGCY 5 cut(s) 68, 74, 165, 194, 300
CviKI_1 RGCY 5 cut(s) 68, 74, 165, 194, 300
CviQI GTAC 2 cut(s) 79, 134
DdeI CTNAG 1 cut(s) 235
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eco105I TACGTA 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 278
EcoT22I ATGCAT 1 cut(s) 93
FaeI CATG 1 cut(s) 65
FaiI YATR 9 cut(s) 42, 63, 71, 120, 206, 210, 272, 303, 321
FaqI GGGAC 1 cut(s) 66
FatI CATG 1 cut(s) 61
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 65
HpaII CCGG 1 cut(s) 197
HphI GGTGA 3 cut(s) 99, 211, 233
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 5 cut(s) 91, 158, 188, 212, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 5 cut(s) 18, 210, 265, 282, 292
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 136
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 1 cut(s) 277
MluCI AATT 1 cut(s) 273
MnlI CCTC 1 cut(s) 89
Mph1103I ATGCAT 1 cut(s) 93
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 96
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 54
NsiI ATGCAT 1 cut(s) 93
PagI TCATGA 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 57
PfoI TCCNGGA 1 cut(s) 278
Ppu21I YACGTR 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PsyI GACNNNGTC 1 cut(s) 57
RsaI GTAC 2 cut(s) 80, 135
RsaNI GTAC 2 cut(s) 79, 134
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 249
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 280
SetI ASST 6 cut(s) 29, 58, 76, 100, 139, 196
SfaNI GCATC 1 cut(s) 100
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 96
SnaBI TACGTA 1 cut(s) 137
Sse9I AATT 1 cut(s) 273
SsiI CCGC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 278
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 94
TaqII GACCGA 1 cut(s) 133
TasI AATT 1 cut(s) 273
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 78
Tth111I GACNNNGTC 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.