Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001998.1

Orthogroup ID

OG0004863

Physical Location & Seq

Genomic Coordinates Reverse (-)

11529 .. 12832

Gene Structure 1304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001998.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggactatgcacggagcctgttcgatgccatgcctgaaagagatctctttctttggaacaccttgataaggggttatgctgatcgagaaccttgtcatgaagccatagttttttacagaaaaatgcatcaaaggggtttatcacccgataactatacttttccttttgtagttcggtcttgtgcgctgcaatcggctttgagagaagggaaacaagtgcattgtaacatagttaaaaatgggtttaagtctgatgtatttgttcagagctctttgagaagggttgagtgttttcgagacttggtggcttcaggttcccaaccaaatgtggttacactggtcagcatcctccctgcttgtgctagtttagaatttttggatttaggaaaactgattcactgtcatggaattaaagttggagttgactcagatatgtcattcatgaatgctttgattgcattttatggtaagtgtcggaatcttgagacagcaagatctttatttgatgggatggtagtaagaaacatggtctcgtggaatgcaatgattgctgcttatgaacagaataatgcagggacggaggcaataaagctctttcgtaggatgcaaaatgaaaatgtggactatgactatatcacaatagtcagtgtaatttcagcctgtgctagcttgggtgcattgaacactgggaaatggttgcatgagcttgtcaaaaggaaaggctttggaaccaatgtttcagtcacaaaggcactcattgacatgtatgcaaagtgtgggaatattgatctggccaagaatgtttttcagaaattgcctcatagaagtgttgtgtcctggacatctataataggggcttgtgcatctcatggtcatggagatgatgctctcatgcttttctcaatgaggaaagaccagggcattaagccaaatagtttcacttttaccgctgttttgaccgcttgtaggcactcaggtctagtagatgaaggaagaaagcattttgagagcatgattaaagactactcccttgtccctggtgtagagcactatgcttgtgtagttgatcttcttggtcgagctggttgtttgttagaagcttataagtttattcagaggatgccggttgagccagacattggtgtctggggagctttacttagtgcttgcaggatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

392

Amino Acids

43.75

Weight (kDa)

8.58

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30210
malus_domestica	MD17G1206900.v1.1
prunus_persica	Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1
pyrus_communis	pycom17g20970
rosa_chinensis	RchiOBHm_Chr2g0136451 RchiOBHm_Chr5g0054651 RchiOBHm_Chr5g0054891
rosa_laevigata	RLG00000034942
rosa_multiflora	Rmu_sc0001998.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025820 Rroxscaffold_1G00025830 Rroxscaffold_1G00026010 Rroxscaffold_1G00026310 Rroxscaffold_1G00026320 Rroxscaffold_2G00108280
rosa_rugosa	Rorug02G0330400 Rorug02G0330500 Rorug05G0287600
rosa_samantha	Rh2AG381500 Rh2AG381600 Rh2BG388200 Rh2BG388300 Rh2CG367800 Rh2CG367900 Rh2DG404600 Rh2DG404700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1104
AasI	GACNNNNNNGTC	1 cut(s)	1142
AccB7I	CCANNNNNTGG	1 cut(s)	1139
AciI	CCGC	2 cut(s)	948, 960
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	69, 966, 1139
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	1 cut(s)	682
AjnI	CCWGG	3 cut(s)	836, 915, 1036
AluBI	AGCT	7 cut(s)	270, 592, 669, 706, 1082, 1100, 1154
AluI	AGCT	7 cut(s)	270, 592, 669, 706, 1082, 1100, 1154
Alw21I	GWGCWC	2 cut(s)	272, 1050
Alw26I	GTCTC	3 cut(s)	291, 479, 535
AoxI	GGCC	1 cut(s)	792
ApeKI	GCWGC	2 cut(s)	187, 551
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	135
AsuNHI	GCTAGC	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	794
BanII	GRGCYC	1 cut(s)	272
BarI	GAAGNNNNNNTAC	2 cut(s)	1053, 1085
BauI	CACGAG	1 cut(s)	532
Bbv12I	GWGCWC	2 cut(s)	272, 1050
BbvI	GCAGC	2 cut(s)	174, 538
BccI	CCATC	2 cut(s)	500, 505
BciT130I	CCWGG	3 cut(s)	838, 917, 1038
BcoDI	GTCTC	3 cut(s)	291, 479, 535
BfaI	CTAG	3 cut(s)	363, 666, 980
BglII	AGATCT	2 cut(s)	43, 494
BisI	GCNGC	2 cut(s)	188, 552
BlsI	GCNGC	2 cut(s)	189, 553
Bme1390I	CCNGG	3 cut(s)	838, 917, 1038
BmiI	GGNNCC	3 cut(s)	17, 316, 730
BmrFI	CCNGG	3 cut(s)	838, 917, 1038
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	7 cut(s)	16, 136, 354, 594, 872, 874, 1110
BmtI	GCTAGC	1 cut(s)	669
BmuI	ACTGGG	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	916, 1036
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 966, 1139
Bse118I	RCCGGY	1 cut(s)	1123
Bse1I	ACTGG	2 cut(s)	342, 691
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	3 cut(s)	838, 917, 1038
BseDI	CCNNGG	2 cut(s)	916, 1036
BseGI	GGATG	4 cut(s)	345, 516, 609, 1125
BseLI	CCNNNNNNNGG	3 cut(s)	69, 966, 1139
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	441, 987
BseNI	ACTGG	2 cut(s)	342, 691
BseXI	GCAGC	2 cut(s)	174, 538
BshFI	GGCC	1 cut(s)	794
BsiHKAI	GWGCWC	2 cut(s)	272, 1050
BsiSI	CCGG	1 cut(s)	1124
BslFI	GGGAC	2 cut(s)	589, 1019
BslI	CCNNNNNNNGG	3 cut(s)	69, 966, 1139
BsmAI	GTCTC	3 cut(s)	291, 479, 535
BsmFI	GGGAC	2 cut(s)	589, 1019
BsmI	GAATGC	2 cut(s)	451, 544
BsnI	GGCC	1 cut(s)	794
Bso31I	GGTCTC	1 cut(s)	535
Bsp1286I	GDGCHC	2 cut(s)	272, 1050
Bsp143I	GATC	5 cut(s)	43, 82, 494, 787, 1066
BspACI	CCGC	2 cut(s)	948, 960
BspANI	GGCC	1 cut(s)	794
BspCNI	CTCAG	2 cut(s)	440, 986
BspHI	TCATGA	2 cut(s)	97, 441
BspLI	GGNNCC	3 cut(s)	17, 316, 730
BspOI	GCTAGC	1 cut(s)	669
BspTNI	GGTCTC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	1123
BsrI	ACTGG	2 cut(s)	342, 691
BssAI	RCCGGY	1 cut(s)	1123
BssECI	CCNNGG	2 cut(s)	916, 1036
BssMI	GATC	5 cut(s)	43, 82, 494, 787, 1066
BssSI	CACGAG	1 cut(s)	532
Bst2BI	CACGAG	1 cut(s)	532
Bst2UI	CCWGG	3 cut(s)	838, 917, 1038
Bst4CI	ACNGT	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	667, 1168
BstDEI	CTNAG	3 cut(s)	427, 973, 1160
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	345, 516, 609, 1125
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	5 cut(s)	46, 85, 497, 790, 1069
BstMAI	GTCTC	3 cut(s)	291, 479, 535
BstMBI	GATC	5 cut(s)	43, 82, 494, 787, 1066
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 548, 1129
BstNI	CCWGG	3 cut(s)	838, 917, 1038
BstNSI	RCATGY	1 cut(s)	766
BstSCI	CCNGG	3 cut(s)	836, 915, 1036
BstV1I	GCAGC	2 cut(s)	174, 538
BstX2I	RGATCY	2 cut(s)	43, 494
BstYI	RGATCY	2 cut(s)	43, 494
BsuRI	GGCC	1 cut(s)	794
BtsCI	GGATG	4 cut(s)	345, 516, 609, 1125
BtsIMutI	CAGTG	4 cut(s)	335, 397, 652, 684
Cac8I	GCNNGC	2 cut(s)	667, 1168
CciI	TCATGA	2 cut(s)	97, 441
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	1123
DdeI	CTNAG	3 cut(s)	427, 973, 1160
DpnI	GATC	5 cut(s)	45, 84, 496, 789, 1068
DpnII	GATC	5 cut(s)	43, 82, 494, 787, 1066
DrdI	GACNNNNNNGTC	1 cut(s)	1142
DseDI	GACNNNNNNGTC	1 cut(s)	1142
EaeI	YGGCCR	1 cut(s)	792
Ecl136II	GAGCTC	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	535
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	270
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRII	CCWGG	3 cut(s)	836, 915, 1036
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	272
FaqI	GGGAC	2 cut(s)	589, 1019
Fnu4HI	GCNGC	2 cut(s)	188, 552
FokI	GGATG	4 cut(s)	332, 523, 616, 1132
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	188, 552
FspBI	CTAG	3 cut(s)	363, 666, 980
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	188, 552
HaeIII	GGCC	1 cut(s)	794
HapII	CCGG	1 cut(s)	1124
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	1098
HinfI	GANTC	3 cut(s)	394, 425, 478
HpaII	CCGG	1 cut(s)	1124
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	424, 622
Hpy188I	TCNGA	6 cut(s)	253, 267, 430, 477, 810, 1116
Hpy188III	TCNNGA	5 cut(s)	86, 98, 296, 442, 482
Hpy8I	GTNNAC	2 cut(s)	424, 622
HpyAV	CCTTC	3 cut(s)	200, 273, 983
HpyCH4III	ACNGT	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 548, 1129
HpyF3I	CTNAG	3 cut(s)	427, 973, 1160
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	5 cut(s)	43, 82, 494, 787, 1066
LmnI	GCTCC	2 cut(s)	15, 1151
Lsp1109I	GCAGC	2 cut(s)	174, 538
LweI	GCATC	7 cut(s)	16, 136, 354, 594, 872, 874, 1110
MaeI	CTAG	3 cut(s)	363, 666, 980
MaeIII	GTNAC	3 cut(s)	224, 331, 742
MalI	GATC	5 cut(s)	45, 84, 496, 789, 1068
MboI	GATC	5 cut(s)	43, 82, 494, 787, 1066
MboII	GAAGA	2 cut(s)	1005, 1061
MflI	RGATCY	2 cut(s)	43, 494
MhlI	GDGCHC	2 cut(s)	272, 1050
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	4 cut(s)	371, 408, 651, 812
MluNI	TGGCCA	1 cut(s)	794
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	397, 455
MnlI	CCTC	5 cut(s)	359, 574, 828, 900, 1110
Mox20I	TGGCCA	1 cut(s)	794
Mph1103I	ATGCAT	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	5 cut(s)	234, 246, 411, 924, 1017
MslI	CAYNNNNRTG	5 cut(s)	402, 761, 825, 873, 879
Msp20I	TGGCCA	1 cut(s)	794
MspA1I	CMGCKG	1 cut(s)	950
MspI	CCGG	1 cut(s)	1124
MspR9I	CCNGG	3 cut(s)	838, 917, 1038
Mva1269I	GAATGC	2 cut(s)	451, 544
MvaI	CCWGG	3 cut(s)	838, 917, 1038
MwoI	GCNNNNNNNGC	3 cut(s)	455, 548, 1129
NdeII	GATC	5 cut(s)	43, 82, 494, 787, 1066
NheI	GCTAGC	1 cut(s)	665
NlaIV	GGNNCC	3 cut(s)	17, 316, 730
NmuCI	GTSAC	1 cut(s)	742
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	1 cut(s)	766
PagI	TCATGA	2 cut(s)	97, 441
PciI	ACATGT	1 cut(s)	762
PctI	GAATGC	2 cut(s)	451, 544
PfeI	GAWTC	2 cut(s)	394, 478
PflMI	CCANNNNNTGG	1 cut(s)	1139
PfoI	TCCNGGA	1 cut(s)	836
PkrI	GCNGC	2 cut(s)	189, 553
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PscI	ACATGT	1 cut(s)	762
PsiI	TTATAA	1 cut(s)	1104
Psp124BI	GAGCTC	1 cut(s)	272
Psp6I	CCWGG	3 cut(s)	836, 915, 1036
PspGI	CCWGG	3 cut(s)	836, 915, 1036
PspN4I	GGNNCC	3 cut(s)	17, 316, 730
PsuI	RGATCY	2 cut(s)	43, 494
RseI	CAYNNNNRTG	5 cut(s)	402, 761, 825, 873, 879
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	5 cut(s)	234, 246, 411, 924, 1017
SatI	GCNGC	2 cut(s)	188, 552
Sau3AI	GATC	5 cut(s)	43, 82, 494, 787, 1066
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	838, 917, 1038
SduI	GDGCHC	2 cut(s)	272, 1050
SfaNI	GCATC	7 cut(s)	16, 136, 354, 594, 872, 874, 1110
SmiMI	CAYNNNNRTG	5 cut(s)	402, 761, 825, 873, 879
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	371, 408, 651, 812
SsiI	CCGC	2 cut(s)	948, 960
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	3 cut(s)	363, 666, 980
SstI	GAGCTC	1 cut(s)	272
StyD4I	CCNGG	3 cut(s)	836, 915, 1036
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	4 cut(s)	24, 85, 295, 1078
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	4 cut(s)	371, 408, 651, 812
TfiI	GAWTC	2 cut(s)	394, 478
Tru1I	TTAA	5 cut(s)	234, 246, 411, 924, 1017
Tru9I	TTAA	5 cut(s)	234, 246, 411, 924, 1017
TscAI	CASTG	4 cut(s)	342, 404, 652, 691
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	2 cut(s)	187, 551
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	6 cut(s)	114, 430, 458, 573, 627, 1002
TspGWI	ACGGA	2 cut(s)	28, 593
TspRI	CASTG	4 cut(s)	342, 404, 652, 691
Van91I	CCANNNNNTGG	1 cut(s)	1139
XagI	CCTNNNNNAGG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	766
XspI	CTAG	3 cut(s)	363, 666, 980
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.