Rh2AG381500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004863
Physical Location & Seq
Forward (+)
57202323 .. 57202874
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG381500.1

Sequence Viewer

Length: 552 bp
ATGTGGTCTGTCCTTACACTGGGGACAAAACTCAAGTTCATCACCTCCCTCCCCTTGAACCACTTTTTAGAGTCTTGCTCTTCTCTTTCAGACCTTAAATGCATCCATGCTAAAATCATCAAAACTGGGTACTATCGAAACCTCCCCCTTGTAACAAAGCTTGTAACTTTTGCTTCTTCTATGGTCCCTACCATGGACTATGCACGGAGCCTGTTCGATGCCATGCCTGAAAGAGATGTATTTCTTTGGAACACCTTGATCAGGGGTTATGCTGATCGGGAACCTTGTCATGAAGCCATAGTTTTTTACAGAAAAATGCATCAAAGGGGTTTATCACCCGATAACTATACTTTTCCTTTTGTAGTTCGGTCTTGTGCGCTGCAATCGGCTTTGAGAGAAGGGAAACAAGTGCATTGTAACATAGTTAAAAATGGGTTTAAGTCTGATGTATTTGTTCAGAGCTCTTTGGTGAGTATGTATGCACAGAATGGTGAAACTTTGAATTCAGAGCTTGTTTTTAACGAAATGGTTGTGAGGAACATAGTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

183

Amino Acids

20.89

Weight (kDa)

8.99

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 78 - 125 2e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 502
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 3 cut(s) 19, 193, 261
AgsI TTSAA 2 cut(s) 58, 502
AloI GAACNNNNNNTCC 1 cut(s) 530
AluBI AGCT 3 cut(s) 160, 462, 511
AluI AGCT 3 cut(s) 160, 462, 511
Alw21I GWGCWC 1 cut(s) 464
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 502
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 4 cut(s) 34, 327, 481, 503
AvaII GGWCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 464
Bbv12I GWGCWC 1 cut(s) 464
BbvI GCAGC 1 cut(s) 366
BclI TGATCA 1 cut(s) 258
BfaI CTAG 1 cut(s) 550
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 3 cut(s) 186, 209, 282
BmrI ACTGGG 2 cut(s) 29, 135
BmsI GCATC 3 cut(s) 111, 208, 328
BmuI ACTGGG 2 cut(s) 29, 135
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpuEI CTTGAG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 193, 261
Bse1I ACTGG 2 cut(s) 24, 130
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 19, 193, 261
BseNI ACTGG 2 cut(s) 24, 130
BseXI GCAGC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 464
BslFI GGGAC 2 cut(s) 37, 170
BslI CCNNNNNNNGG 3 cut(s) 19, 193, 261
BsmFI GGGAC 2 cut(s) 37, 170
Bsp1286I GDGCHC 1 cut(s) 464
Bsp143I GATC 2 cut(s) 258, 274
Bsp19I CCATGG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 186, 209, 282
BspQI GCTCTTC 1 cut(s) 85
BsrI ACTGG 2 cut(s) 24, 130
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 258, 274
BssT1I CCWWGG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 85
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 2 cut(s) 261, 277
BstMBI GATC 2 cut(s) 258, 274
BstV1I GCAGC 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 17
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 130
CviAII CATG 4 cut(s) 107, 193, 223, 290
CviJI RGCY 6 cut(s) 160, 210, 296, 389, 462, 511
CviKI_1 RGCY 6 cut(s) 160, 210, 296, 389, 462, 511
CviQI GTAC 1 cut(s) 130
DpnI GATC 2 cut(s) 260, 276
DpnII GATC 2 cut(s) 258, 274
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 462
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 502
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 2 cut(s) 104, 321
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 4 cut(s) 110, 196, 226, 293
FaqI GGGAC 2 cut(s) 37, 170
FatI CATG 4 cut(s) 106, 192, 222, 289
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 550
GlaI GCGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 380
HhaI GCGC 1 cut(s) 379
Hin1II CATG 4 cut(s) 110, 196, 226, 293
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 71
HphI GGTGA 4 cut(s) 34, 327, 481, 503
Hpy188I TCNGA 4 cut(s) 91, 445, 459, 508
Hpy188III TCNNGA 2 cut(s) 278, 290
HpyAV CCTTC 1 cut(s) 392
HpyCH4V TGCA 6 cut(s) 102, 203, 319, 382, 412, 482
Hsp92II CATG 4 cut(s) 110, 196, 226, 293
HspAI GCGC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 2 cut(s) 258, 274
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 5 cut(s) 5, 111, 224, 240, 247
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 3 cut(s) 111, 208, 328
MaeI CTAG 1 cut(s) 550
MaeIII GTNAC 3 cut(s) 151, 163, 416
MalI GATC 2 cut(s) 260, 276
MboI GATC 2 cut(s) 258, 274
MboII GAAGA 2 cut(s) 72, 168
MhlI GDGCHC 1 cut(s) 464
MluCI AATT 1 cut(s) 502
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 55, 59, 152, 528
Mph1103I ATGCAT 2 cut(s) 104, 321
MseI TTAA 4 cut(s) 96, 426, 438, 519
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 258, 274
NlaIII CATG 4 cut(s) 110, 196, 226, 293
NlaIV GGNNCC 3 cut(s) 186, 209, 282
NsiI ATGCAT 2 cut(s) 104, 321
PagI TCATGA 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 464
PspN4I GGNNCC 3 cut(s) 186, 209, 282
PspPI GGNCC 1 cut(s) 184
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SacI GAGCTC 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 4 cut(s) 96, 426, 438, 519
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 258, 274
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 464
SetI ASST 8 cut(s) 47, 96, 144, 162, 257, 286, 464, 513
SfaNI GCATC 3 cut(s) 111, 208, 328
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 502
SspMI CTAG 1 cut(s) 550
SstI GAGCTC 1 cut(s) 464
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 2 cut(s) 136, 216
TaqII GACCGA 1 cut(s) 357
TasI AATT 1 cut(s) 502
Tru1I TTAA 4 cut(s) 96, 426, 438, 519
Tru9I TTAA 4 cut(s) 96, 426, 438, 519
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 28, 306
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 259
XapI RAATTY 1 cut(s) 502
XspI CTAG 1 cut(s) 550
Zsp2I ATGCAT 2 cut(s) 104, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.