Rh2CG367800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004863
Physical Location & Seq
Forward (+)
50049764 .. 50050186
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG367800.1

Sequence Viewer

Length: 423 bp
ATGTGGTCTGTCCTTACACTGGGGACAAAACTCAAGTTCATCACCTCCCTCCCCTTGAACCACTTTTTAGAGTCTTGCTCTTCTCTTTCAGACCTTAAATGCATCCATGCTAAAATCATCAAAACTGGGTACTATCGAAACCTCCCCCTTGTAACAAAGCTTGTAACTTTTGCTTCTTCTATGGTCCCTACCATGGACTATGCACGGAGCCTGTTCGATGCCATGCCTGAAAGAGATGTATTTCTTTGGAACACCTTGATCAGGGGTTATGCTGATCGGGAACCTTGTCATGAAGCCATAGTTTTGTACAGAAAAATGCATCAAAGGGGTTTATCACCCGATAACTATACTTTTCCTTTTGTAGTTCGGTCTTGTGCGCTGCAATCGGCTTTGAGAGAAGGAAATAAGTGCATTGTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

140

Amino Acids

16.02

Weight (kDa)

9.2

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 78 - 125 4.6e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 131, 308
AfiI CCNNNNNNNGG 3 cut(s) 19, 193, 261
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 379
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 34, 327
AvaII GGWCC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 366
BclI TGATCA 1 cut(s) 258
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 3 cut(s) 186, 209, 282
BmrI ACTGGG 2 cut(s) 29, 135
BmsI GCATC 3 cut(s) 111, 208, 328
BmuI ACTGGG 2 cut(s) 29, 135
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpuEI CTTGAG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 193, 261
Bse1I ACTGG 2 cut(s) 24, 130
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 3 cut(s) 19, 193, 261
BseNI ACTGG 2 cut(s) 24, 130
BseXI GCAGC 1 cut(s) 366
BslFI GGGAC 2 cut(s) 37, 170
BslI CCNNNNNNNGG 3 cut(s) 19, 193, 261
BsmFI GGGAC 2 cut(s) 37, 170
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 2 cut(s) 258, 274
Bsp19I CCATGG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 186, 209, 282
BspQI GCTCTTC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 2 cut(s) 24, 130
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 258, 274
BssT1I CCWWGG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 85
BstAUI TGTACA 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 259
BstF5I GGATG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 2 cut(s) 261, 277
BstMBI GATC 2 cut(s) 258, 274
BstV1I GCAGC 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 17
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 2 cut(s) 130, 307
CviAII CATG 4 cut(s) 107, 193, 223, 290
CviJI RGCY 4 cut(s) 160, 210, 296, 389
CviKI_1 RGCY 4 cut(s) 160, 210, 296, 389
CviQI GTAC 2 cut(s) 130, 307
DpnI GATC 2 cut(s) 260, 276
DpnII GATC 2 cut(s) 258, 274
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 184
EcoNI CCTNNNNNAGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 2 cut(s) 104, 321
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 4 cut(s) 110, 196, 226, 293
FaqI GGGAC 2 cut(s) 37, 170
FatI CATG 4 cut(s) 106, 192, 222, 289
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 380
GlaI GCGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 380
HhaI GCGC 1 cut(s) 379
Hin1II CATG 4 cut(s) 110, 196, 226, 293
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 71
HphI GGTGA 2 cut(s) 34, 327
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 278, 290
HpyAV CCTTC 1 cut(s) 392
HpyCH4V TGCA 5 cut(s) 102, 203, 319, 382, 411
Hsp92II CATG 4 cut(s) 110, 196, 226, 293
HspAI GCGC 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 2 cut(s) 258, 274
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 5 cut(s) 5, 111, 224, 240, 247
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 3 cut(s) 111, 208, 328
MaeIII GTNAC 3 cut(s) 151, 163, 415
MalI GATC 2 cut(s) 260, 276
MboI GATC 2 cut(s) 258, 274
MboII GAAGA 2 cut(s) 72, 168
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 3 cut(s) 55, 59, 152
Mph1103I ATGCAT 2 cut(s) 104, 321
MseI TTAA 1 cut(s) 96
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 258, 274
NlaIII CATG 4 cut(s) 110, 196, 226, 293
NlaIV GGNNCC 3 cut(s) 186, 209, 282
NsiI ATGCAT 2 cut(s) 104, 321
PagI TCATGA 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 186, 209, 282
PspPI GGNCC 1 cut(s) 184
RsaI GTAC 2 cut(s) 131, 308
RsaNI GTAC 2 cut(s) 130, 307
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 258, 274
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 1 cut(s) 80
SetI ASST 6 cut(s) 47, 96, 144, 162, 257, 286
SfaNI GCATC 3 cut(s) 111, 208, 328
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 2 cut(s) 136, 216
TaqII GACCGA 1 cut(s) 357
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 28, 306
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 259
Zsp2I ATGCAT 2 cut(s) 104, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.