Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004863

Physical Location & Seq

Genomic Coordinates Forward (+)

50050380 .. 50051168

Gene Structure 789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG367900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGTGGCTTCAGGTTCCCAACCAAATGTGGTTACGCTGGTCAGCATCCTCCCTGCTTGTGCTAGTTTAGAATTTTTGGGTTTAGGAAAACTGATTCACTGTCATGGAATTAAAGTTGGAGTTGACTCAGATATGTCATTCATGAATGCTTTGATTGCATTTTATGGTAAGTGTCGGAATCTTGAGACAGCAAGATCTTTATTTGATGGGATGGTAGTAAGAAACCTGGTCTCGTGGAATGCAATGATTGCTGCTTATGAACAGAATAATGCAGGGACGGAGGCAATAAAGCTCTTTCATAGGATGCAAAATGAAAATGTGGACTATGACTATATCACAATAGTCAGTGTAATTTCAGCCTGTGCTAGCTTGGGTGCATTGAACACTGGGAAATGGTTGCATGAGCTTGTCAAAAGGAAAGGCTTTGGAACCAATGTTTCAGTCACAAAGGCACTCATTGACATGTATGCAAAGTGTGGGAATATTGATCTGGCCAAGAATGTTTTTCAGAAATTGCCTCATAGAAGTGTTGTGTCCTGGACATATATAATAGGGGCTTGTGCATCTCATGGTCATGGAGATGATGCTCTCATGCTTTTCTCAATGATGAAAGACCAGGGCATTAAACCAAATAGTTTCACTTTTACCGCTGTTTTGACTGCTTGTAGGCACTCAGGTCTAGTAGACGAAGGGAGAAAGCATTTTGAGAGCATGATTAAAGACTACTCCCTTGTCCCTGGTGTAGAGCACTATGCTTGTGTAGTTGATCTTCTTGGTCGTGCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

262

Amino Acids

28.57

Weight (kDa)

8.09

Isoelectric Point (pI)

31.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 122	3.2e-09	PPR repeat family
PPR	PF01535	77 - 107	3.7e-06	PPR repeat
PPR_2	PF13041	176 - 222	7.7e-14	PPR repeat family
PPR_3	PF13812	176 - 222	2e-06	Pentatricopeptide repeat domain
PPR	PF01535	178 - 208	4.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30210
malus_domestica	MD17G1206900.v1.1
prunus_persica	Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1
pyrus_communis	pycom17g20970
rosa_chinensis	RchiOBHm_Chr2g0136451 RchiOBHm_Chr5g0054651 RchiOBHm_Chr5g0054891
rosa_laevigata	RLG00000034942
rosa_multiflora	Rmu_sc0001998.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025820 Rroxscaffold_1G00025830 Rroxscaffold_1G00026010 Rroxscaffold_1G00026310 Rroxscaffold_1G00026320 Rroxscaffold_2G00108280
rosa_rugosa	Rorug02G0330400 Rorug02G0330500 Rorug05G0287600
rosa_samantha	Rh2AG381500 Rh2AG381600 Rh2BG388200 Rh2BG388300 Rh2CG367800 Rh2CG367900 Rh2DG404600 Rh2DG404700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	684
AciI	CCGC	1 cut(s)	648
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	4 cut(s)	225, 536, 615, 736
AluBI	AGCT	3 cut(s)	292, 369, 406
AluI	AGCT	3 cut(s)	292, 369, 406
Alw21I	GWGCWC	1 cut(s)	750
Alw26I	GTCTC	2 cut(s)	179, 235
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	71
AsuNHI	GCTAGC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
BauI	CACGAG	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	200, 205
BciT130I	CCWGG	4 cut(s)	227, 538, 617, 738
BcoDI	GTCTC	2 cut(s)	179, 235
BfaI	CTAG	3 cut(s)	63, 366, 680
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	4 cut(s)	227, 538, 617, 738
BmiI	GGNNCC	2 cut(s)	16, 430
BmrFI	CCNGG	4 cut(s)	227, 538, 617, 738
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	4 cut(s)	54, 294, 572, 574
BmtI	GCTAGC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	616, 736
Bse1I	ACTGG	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	4 cut(s)	227, 538, 617, 738
BseDI	CCNNGG	2 cut(s)	616, 736
BseGI	GGATG	3 cut(s)	45, 216, 309
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	141, 687
BseNI	ACTGG	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	750
BslFI	GGGAC	2 cut(s)	289, 719
BsmAI	GTCTC	2 cut(s)	179, 235
BsmFI	GGGAC	2 cut(s)	289, 719
BsmI	GAATGC	2 cut(s)	151, 244
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	750
Bsp143I	GATC	3 cut(s)	194, 487, 766
BspACI	CCGC	1 cut(s)	648
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	140, 686
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	16, 430
BspOI	GCTAGC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	616, 736
BssMI	GATC	3 cut(s)	194, 487, 766
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
Bst2UI	CCWGG	4 cut(s)	227, 538, 617, 738
Bst4CI	ACNGT	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	2 cut(s)	127, 673
BstF5I	GGATG	3 cut(s)	45, 216, 309
BstKTI	GATC	3 cut(s)	197, 490, 769
BstMAI	GTCTC	2 cut(s)	179, 235
BstMBI	GATC	3 cut(s)	194, 487, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 248
BstNI	CCWGG	4 cut(s)	227, 538, 617, 738
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	4 cut(s)	225, 536, 615, 736
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	45, 216, 309
BtsIMutI	CAGTG	3 cut(s)	97, 352, 384
Cac8I	GCNNGC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	141
CsiI	ACCWGGT	1 cut(s)	225
CviAII	CATG	8 cut(s)	104, 142, 401, 463, 569, 575, 592, 712
CviJI	RGCY	8 cut(s)	8, 292, 359, 369, 406, 423, 494, 557
CviKI_1	RGCY	8 cut(s)	8, 292, 359, 369, 406, 423, 494, 557
DdeI	CTNAG	2 cut(s)	127, 673
DpnI	GATC	3 cut(s)	196, 489, 768
DpnII	GATC	3 cut(s)	194, 487, 766
EaeI	YGGCCR	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	235
EcoRII	CCWGG	4 cut(s)	225, 536, 615, 736
FaeI	CATG	8 cut(s)	107, 145, 404, 466, 572, 578, 595, 715
FaqI	GGGAC	2 cut(s)	289, 719
FatI	CATG	8 cut(s)	103, 141, 400, 462, 568, 574, 591, 711
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	3 cut(s)	32, 223, 316
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	3 cut(s)	63, 366, 680
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	494
Hin1II	CATG	8 cut(s)	107, 145, 404, 466, 572, 578, 595, 715
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	94, 125, 178
Hpy166II	GTNNAC	3 cut(s)	124, 322, 685
Hpy188I	TCNGA	3 cut(s)	130, 177, 510
Hpy188III	TCNNGA	2 cut(s)	142, 182
Hpy8I	GTNNAC	3 cut(s)	124, 322, 685
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	8 cut(s)	158, 242, 272, 307, 377, 400, 470, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 248
HpyF3I	CTNAG	2 cut(s)	127, 673
Hsp92II	CATG	8 cut(s)	107, 145, 404, 466, 572, 578, 595, 715
Kzo9I	GATC	3 cut(s)	194, 487, 766
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	4 cut(s)	54, 294, 572, 574
MabI	ACCWGGT	1 cut(s)	225
MaeI	CTAG	3 cut(s)	63, 366, 680
MaeIII	GTNAC	2 cut(s)	31, 442
MalI	GATC	3 cut(s)	196, 489, 768
MboI	GATC	3 cut(s)	194, 487, 766
MboII	GAAGA	1 cut(s)	761
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	750
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	4 cut(s)	71, 108, 351, 512
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	97, 155
MnlI	CCTC	3 cut(s)	59, 274, 528
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	3 cut(s)	111, 624, 717
MslI	CAYNNNNRTG	5 cut(s)	102, 461, 525, 573, 579
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	650
MspR9I	CCNGG	4 cut(s)	227, 538, 617, 738
Mva1269I	GAATGC	2 cut(s)	151, 244
MvaI	CCWGG	4 cut(s)	227, 538, 617, 738
MwoI	GCNNNNNNNGC	2 cut(s)	155, 248
NdeII	GATC	3 cut(s)	194, 487, 766
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	8 cut(s)	107, 145, 404, 466, 572, 578, 595, 715
NlaIV	GGNNCC	2 cut(s)	16, 430
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	466
PagI	TCATGA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	462
PctI	GAATGC	2 cut(s)	151, 244
PfeI	GAWTC	2 cut(s)	94, 178
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PscI	ACATGT	1 cut(s)	462
Psp6I	CCWGG	4 cut(s)	225, 536, 615, 736
PspGI	CCWGG	4 cut(s)	225, 536, 615, 736
PspN4I	GGNNCC	2 cut(s)	16, 430
PsuI	RGATCY	1 cut(s)	194
RseI	CAYNNNNRTG	5 cut(s)	102, 461, 525, 573, 579
SaqAI	TTAA	3 cut(s)	111, 624, 717
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	194, 487, 766
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	4 cut(s)	227, 538, 617, 738
SduI	GDGCHC	1 cut(s)	750
SetI	ASST	6 cut(s)	16, 228, 294, 371, 408, 679
SexAI	ACCWGGT	1 cut(s)	225
SfaNI	GCATC	4 cut(s)	54, 294, 572, 574
SmiMI	CAYNNNNRTG	5 cut(s)	102, 461, 525, 573, 579
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	71, 108, 351, 512
SsiI	CCGC	1 cut(s)	648
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	3 cut(s)	63, 366, 680
StyD4I	CCNGG	4 cut(s)	225, 536, 615, 736
TaaI	ACNGT	1 cut(s)	101
TasI	AATT	4 cut(s)	71, 108, 351, 512
TfiI	GAWTC	2 cut(s)	94, 178
Tru1I	TTAA	3 cut(s)	111, 624, 717
Tru9I	TTAA	3 cut(s)	111, 624, 717
TscAI	CASTG	3 cut(s)	104, 352, 391
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	6 cut(s)	130, 158, 273, 287, 327, 623
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	104, 352, 391
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	3 cut(s)	63, 366, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.