Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004863

Physical Location & Seq

Genomic Coordinates Forward (+)

32700065 .. 32700884

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCATTGTAACATAATTAAAAATGGGTTTAGTTCTGATGTATTTGTTCAGAGCTCCTTGGTGAGTCTATATGCACAGAACGGTGAAAATTTGAACTCAGAACTTGTTATTAACGAAATGGTTGAGAAGAACATAATTTCCTGGACTGCAATGATAGCAGGCTATGTGAAAAATGGGTTCTATATAGAAGGGTTGAGTGTTTTGCACGACATGGTAGCTTCAGGTTCCCAACCAAATGTGGTTACACTGGTCAGCATCCTCCTTGCTTGTGCTAGGGCTTGTGCATCTCATGGTCATGGGGATGATGCTCTCATGCTTTTCTCAATGATGAAAGAAAAGGGTATTAAACCATATAGTTTCACTTTTACAGCTGTTTTGACTGCTTGTAGGCACTCAGGTCTAGTAGATGAAGGGAGAAAGCATTTTGAGAGCATGATTAAAGACTACTCCCTTGTCCCTGGTGTAGAGCACTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

159

Amino Acids

17.4

Weight (kDa)

5.93

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	43 - 92	2.4e-08	PPR repeat family
PPR	PF01535	46 - 75	3.4e-07	PPR repeat
PPR_3	PF13812	66 - 129	1.9e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	93 - 129	9.4e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30210
malus_domestica	MD17G1206900.v1.1
prunus_persica	Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1
pyrus_communis	pycom17g20970
rosa_chinensis	RchiOBHm_Chr2g0136451 RchiOBHm_Chr5g0054651 RchiOBHm_Chr5g0054891
rosa_laevigata	RLG00000034942
rosa_multiflora	Rmu_sc0001998.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025820 Rroxscaffold_1G00025830 Rroxscaffold_1G00026010 Rroxscaffold_1G00026310 Rroxscaffold_1G00026320 Rroxscaffold_2G00108280
rosa_rugosa	Rorug02G0330400 Rorug02G0330500 Rorug05G0287600
rosa_samantha	Rh2AG381500 Rh2AG381600 Rh2BG388200 Rh2BG388300 Rh2CG367800 Rh2CG367900 Rh2DG404600 Rh2DG404700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	2 cut(s)	140, 457
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	54, 218, 371
AluI	AGCT	3 cut(s)	54, 218, 371
Alw21I	GWGCWC	2 cut(s)	56, 471
ApoI	RAATTY	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	73, 95
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	56, 471
BciT130I	CCWGG	2 cut(s)	142, 459
BfaI	CTAG	2 cut(s)	273, 401
Bme1390I	CCNGG	2 cut(s)	142, 459
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	142, 459
BmsI	GCATC	3 cut(s)	264, 293, 295
BsaJI	CCNNGG	2 cut(s)	57, 457
Bse1I	ACTGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	142, 459
BseDI	CCNNGG	2 cut(s)	57, 457
BseGI	GGATG	2 cut(s)	255, 307
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	111, 408
BseNI	ACTGG	1 cut(s)	252
BsiHKAI	GWGCWC	2 cut(s)	56, 471
BslFI	GGGAC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	56, 471
BspCNI	CTCAG	2 cut(s)	110, 407
BspLI	GGNNCC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	2 cut(s)	57, 457
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	142, 459
Bst4CI	ACNGT	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	2 cut(s)	97, 394
BstF5I	GGATG	2 cut(s)	255, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	2 cut(s)	142, 459
BstSCI	CCNGG	2 cut(s)	140, 457
BtsCI	GGATG	2 cut(s)	255, 307
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	160
CviAII	CATG	5 cut(s)	211, 290, 296, 313, 433
CviJI	RGCY	5 cut(s)	54, 162, 218, 278, 371
CviKI_1	RGCY	5 cut(s)	54, 162, 218, 278, 371
DdeI	CTNAG	2 cut(s)	97, 394
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	140, 457
EcoT14I	CCWWGG	1 cut(s)	57
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	5 cut(s)	214, 293, 299, 316, 436
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	5 cut(s)	210, 289, 295, 312, 432
FokI	GGATG	2 cut(s)	242, 314
FriOI	GRGCYC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	273, 401
Hin1II	CATG	5 cut(s)	214, 293, 299, 316, 436
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	2 cut(s)	73, 95
Hpy188I	TCNGA	3 cut(s)	37, 51, 100
HpyAV	CCTTC	2 cut(s)	182, 404
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	5 cut(s)	4, 74, 149, 205, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	97, 394
Hsp92II	CATG	5 cut(s)	214, 293, 299, 316, 436
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	8 cut(s)	127, 144, 154, 207, 233, 381, 444, 471
LweI	GCATC	3 cut(s)	264, 293, 295
MaeI	CTAG	2 cut(s)	273, 401
MaeIII	GTNAC	2 cut(s)	8, 241
MboII	GAAGA	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	56, 471
MluCI	AATT	3 cut(s)	15, 88, 135
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	1 cut(s)	269
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	18, 111, 345, 438
MslI	CAYNNNNRTG	2 cut(s)	294, 300
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	142, 459
MvaI	CCWGG	2 cut(s)	142, 459
MwoI	GCNNNNNNNGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	214, 293, 299, 316, 436
NlaIV	GGNNCC	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	6
PfoI	TCCNGGA	1 cut(s)	140
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	2 cut(s)	140, 457
PspGI	CCWGG	2 cut(s)	140, 457
PspN4I	GGNNCC	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	371
RseI	CAYNNNNRTG	2 cut(s)	294, 300
SacI	GAGCTC	1 cut(s)	56
SaqAI	TTAA	4 cut(s)	18, 111, 345, 438
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	142, 459
SduI	GDGCHC	2 cut(s)	56, 471
SetI	ASST	5 cut(s)	56, 220, 226, 373, 400
SfaNI	GCATC	3 cut(s)	264, 293, 295
SmiMI	CAYNNNNRTG	2 cut(s)	294, 300
Sse9I	AATT	3 cut(s)	15, 88, 135
SspMI	CTAG	2 cut(s)	273, 401
SstI	GAGCTC	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	140, 457
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	83
TasI	AATT	3 cut(s)	15, 88, 135
Tru1I	TTAA	4 cut(s)	18, 111, 345, 438
Tru9I	TTAA	4 cut(s)	18, 111, 345, 438
TscAI	CASTG	1 cut(s)	252
TspDTI	ATGAA	2 cut(s)	344, 423
TspRI	CASTG	1 cut(s)	252
XapI	RAATTY	1 cut(s)	88
XspI	CTAG	2 cut(s)	273, 401
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.