Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004863

Physical Location & Seq

Genomic Coordinates Forward (+)

32429936 .. 32430586

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00025830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTAGTAAGAAACCTGGTCTCTTGGAATGCAATGATTGCTGCTTATGAACAGAATAATGTAGGAAAGGAAGCAATAAATCTCTTTTGTAGGATCCAAAATGAAAATGTGGAGTATGACTATATCACAATAGTCGGTGTTATTTCAGCCTGTGCTAGCTTGGGTGCATTGAACACTGGGAAATGGTTGCATGAGTTGTCAAAAGGAAAGGCTTTGGAACCAATGTTTCACTCACAAATGCACTCATTGACATGGGCTTGTGCATCTCATGGTCATGGGGATGATGCTCTCATGCTTTTCTCAATGATGAAAGAAAAGGGTATTAAACCAAATAGTTTCACTTTTACAGCTGTTTTGACTGCTTGTAGGCACTCAGCGGGTTGTTTGTTAGAAGCTTATAAGTTTATTGAGAGGATGCCGGTTGAGCCGGACGTTGGTGTTTGGGGAGCTTTACTTAGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

154

Amino Acids

16.98

Weight (kDa)

6.28

Isoelectric Point (pI)

27.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	5 - 52	3.1e-07	PPR repeat family
PPR_3	PF13812	83 - 122	8.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	86 - 122	2.6e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30210
malus_domestica	MD17G1206900.v1.1
prunus_persica	Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1
pyrus_communis	pycom17g20970
rosa_chinensis	RchiOBHm_Chr2g0136451 RchiOBHm_Chr5g0054651 RchiOBHm_Chr5g0054891
rosa_laevigata	RLG00000034942
rosa_multiflora	Rmu_sc0001998.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025820 Rroxscaffold_1G00025830 Rroxscaffold_1G00026010 Rroxscaffold_1G00026310 Rroxscaffold_1G00026320 Rroxscaffold_2G00108280
rosa_rugosa	Rorug02G0330400 Rorug02G0330500 Rorug05G0287600
rosa_samantha	Rh2AG381500 Rh2AG381600 Rh2BG388200 Rh2BG388300 Rh2CG367800 Rh2CG367900 Rh2DG404600 Rh2DG404700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	2 cut(s)	88, 101
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	159, 350, 395, 449
AluI	AGCT	4 cut(s)	159, 350, 395, 449
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	88, 101
ApeKI	GCWGC	1 cut(s)	41
AsuNHI	GCTAGC	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	95, 219
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	3 cut(s)	272, 274, 405
BmtI	GCTAGC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	286, 420
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	419, 428
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	95, 219
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	88, 101
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	418
BssMI	GATC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	17
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	373, 455, 462
BstF5I	GGATG	2 cut(s)	286, 420
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 424
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	286, 420
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	15
CviAII	CATG	5 cut(s)	191, 252, 269, 275, 292
CviJI	RGCY	8 cut(s)	149, 159, 212, 257, 350, 395, 427, 449
CviKI_1	RGCY	8 cut(s)	149, 159, 212, 257, 350, 395, 427, 449
DdeI	CTNAG	3 cut(s)	373, 455, 462
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	5 cut(s)	194, 255, 272, 278, 295
FaiI	YATR	9 cut(s)	48, 117, 123, 192, 253, 270, 276, 293, 399
FatI	CATG	5 cut(s)	190, 251, 268, 274, 291
FauI	CCCGC	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	293, 427
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	42
HapII	CCGG	2 cut(s)	419, 428
Hin1II	CATG	5 cut(s)	194, 255, 272, 278, 295
HindIII	AAGCTT	1 cut(s)	393
HpaII	CCGG	2 cut(s)	419, 428
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	5 cut(s)	32, 167, 190, 241, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 424
HpyF3I	CTNAG	3 cut(s)	373, 455, 462
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	5 cut(s)	194, 255, 272, 278, 295
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	6 cut(s)	2, 29, 162, 163, 432, 441
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	3 cut(s)	272, 274, 405
MabI	ACCWGGT	1 cut(s)	15
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	432
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MflI	RGATCY	1 cut(s)	93
MnlI	CCTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	3 cut(s)	250, 273, 279
MspA1I	CMGCKG	2 cut(s)	350, 377
MspI	CCGG	2 cut(s)	419, 428
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	38, 424
NdeII	GATC	1 cut(s)	93
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	194, 255, 272, 278, 295
NlaIV	GGNNCC	2 cut(s)	95, 219
PctI	GAATGC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	95, 219
PsuI	RGATCY	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	350
RseI	CAYNNNNRTG	3 cut(s)	250, 273, 279
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	6 cut(s)	18, 161, 352, 397, 435, 451
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	3 cut(s)	272, 274, 405
SmiMI	CAYNNNNRTG	3 cut(s)	250, 273, 279
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	63, 117, 323
TspRI	CASTG	1 cut(s)	181
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.