RLG00000034942

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004863
Physical Location & Seq
Reverse (-)
57422778 .. 57423984
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034942

Sequence Viewer

Length: 693 bp
ATGGACTATGCACGGAGCCTGTTCAATGCCATGCCTGAAAGAGATGTTTGGGACACCTTGATAAGGGGTTATGCTGATCGGGGACTTTGTCACGAAGCCATAGCTTTGTACAGAAAAATGCATCGAGGTGGTTTTTCACCCGATAACTATACTTTTCCCTTTAGCTCCTTGGTGAGTATGTATGCACAGAATGGTGAAACTTTGAACTCAGAACTTGTTATTAGCGAAATGGTTGAGAAGAACATAATTTCCTGGACTGCAATGATAACAGGCTACGTGAAAAATGGGTTCTATAAAGAAGGGTTGAGTGTTTTGCACGACATGGTGACTTCAGGTTCCCAACCAAATGTGGTTACACTGAATAATGCAGGAAAGGAAGCAATAAATCTCTTTTGTAGGATCCAAAATGAAAATGTGGAGTATGACTATATCACAATAGTCGGTGTTATTTCAGCCTGTGCTAGCTTGGGTGCATTGAACACTGGGAAATGGTTGCCTGAGTTGTCAAAAGGAAAGCCTTTGGAACCAATGCACTCAGGTCTAGCAGATGAAGGAAGAAAGCATTTTGAGAGCATGGTTAAAGACTACTCCCTTGTCCCAGGTGTAGAGCACTATGCTTGTATGGTTGATCATCCAGGTCGAGCGGGTTTTTTGTTAGAAGCTTGTAAGTTTATTGAAGAGGATGCCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

231

Amino Acids

25.58

Weight (kDa)

5.25

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 16 - 52 4e-08 PPR repeat family
PPR_2 PF13041 80 - 121 1.2e-08 PPR repeat family
PPR PF01535 83 - 112 1.5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 644
AciI CCGC 1 cut(s) 644
AclWI GGATC 2 cut(s) 394, 407
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 4 cut(s) 25, 205, 478, 677
AjnI CCWGG 3 cut(s) 251, 598, 634
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 104, 165, 465, 662
AluI AGCT 4 cut(s) 104, 165, 465, 662
Alw21I GWGCWC 1 cut(s) 612
AlwI GGATC 2 cut(s) 394, 407
AsuHPI GGTGA 4 cut(s) 129, 184, 206, 337
AsuNHI GCTAGC 1 cut(s) 461
BamHI GGATCC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 612
BciT130I CCWGG 3 cut(s) 253, 600, 636
BclI TGATCA 1 cut(s) 628
BfaI CTAG 2 cut(s) 462, 542
Bme1390I CCNGG 3 cut(s) 253, 600, 636
BmiI GGNNCC 4 cut(s) 17, 337, 401, 525
BmrFI CCNGG 3 cut(s) 253, 600, 636
BmrI ACTGGG 1 cut(s) 492
BmsI GCATC 2 cut(s) 130, 673
BmtI GCTAGC 1 cut(s) 465
BmuI ACTGGG 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 168, 598
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 686
Bse1I ACTGG 1 cut(s) 487
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 3 cut(s) 253, 600, 636
BseDI CCNNGG 2 cut(s) 168, 598
BseGI GGATG 2 cut(s) 631, 688
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 222, 489, 549
BseNI ACTGG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 612
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 3 cut(s) 65, 96, 581
BslI CCNNNNNNNGG 1 cut(s) 63
BsmFI GGGAC 3 cut(s) 65, 96, 581
Bsp1286I GDGCHC 1 cut(s) 612
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 3 cut(s) 76, 399, 628
BspACI CCGC 1 cut(s) 644
BspCNI CTCAG 3 cut(s) 221, 490, 548
BspLI GGNNCC 4 cut(s) 17, 337, 401, 525
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 2 cut(s) 394, 407
BsrBI CCGCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 686
BsrGI TGTACA 1 cut(s) 108
BsrI ACTGG 1 cut(s) 487
BssAI RCCGGY 1 cut(s) 686
BssECI CCNNGG 2 cut(s) 168, 598
BssMI GATC 3 cut(s) 76, 399, 628
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 3 cut(s) 253, 600, 636
Bst6I CTCTTC 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 3 cut(s) 208, 498, 535
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 631, 688
BstKTI GATC 3 cut(s) 79, 402, 631
BstMBI GATC 3 cut(s) 76, 399, 628
BstNI CCWGG 3 cut(s) 253, 600, 636
BstSCI CCNGG 3 cut(s) 251, 598, 634
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
BtsCI GGATG 2 cut(s) 631, 688
BtsIMutI CAGTG 2 cut(s) 356, 480
Cac8I GCNNGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 686
Csp6I GTAC 1 cut(s) 109
CviAII CATG 3 cut(s) 31, 322, 574
CviJI RGCY 9 cut(s) 18, 98, 104, 165, 273, 455, 465, 517, 662
CviKI_1 RGCY 9 cut(s) 18, 98, 104, 165, 273, 455, 465, 517, 662
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 3 cut(s) 208, 498, 535
DpnI GATC 3 cut(s) 78, 401, 630
DpnII GATC 3 cut(s) 76, 399, 628
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 315
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 251, 598, 634
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 3 cut(s) 34, 325, 577
FaqI GGGAC 3 cut(s) 65, 96, 581
FatI CATG 3 cut(s) 30, 321, 573
FauI CCCGC 1 cut(s) 637
FbaI TGATCA 1 cut(s) 628
FokI GGATG 1 cut(s) 618
FspBI CTAG 2 cut(s) 462, 542
HapII CCGG 1 cut(s) 687
Hin1II CATG 3 cut(s) 34, 325, 577
HindIII AAGCTT 1 cut(s) 660
HpaII CCGG 1 cut(s) 687
HphI GGTGA 4 cut(s) 129, 184, 206, 337
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 293, 545
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 8 cut(s) 11, 121, 185, 260, 316, 368, 473, 532
HpyF3I CTNAG 3 cut(s) 208, 498, 535
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 3 cut(s) 34, 325, 577
Ksp22I TGATCA 1 cut(s) 628
Kzo9I GATC 3 cut(s) 76, 399, 628
LmnI GCTCC 2 cut(s) 15, 170
LweI GCATC 2 cut(s) 130, 673
MaeI CTAG 2 cut(s) 462, 542
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 3 cut(s) 89, 325, 352
MalI GATC 3 cut(s) 78, 401, 630
MbiI CCGCTC 1 cut(s) 644
MboI GATC 3 cut(s) 76, 399, 628
MboII GAAGA 3 cut(s) 250, 567, 689
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 612
MluCI AATT 1 cut(s) 246
MnlI CCTC 2 cut(s) 119, 673
Mph1103I ATGCAT 1 cut(s) 123
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 126
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 3 cut(s) 253, 600, 636
MvaI CCWGG 3 cut(s) 253, 600, 636
NdeII GATC 3 cut(s) 76, 399, 628
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 3 cut(s) 34, 325, 577
NlaIV GGNNCC 4 cut(s) 17, 337, 401, 525
NmuCI GTSAC 2 cut(s) 89, 325
NsiI ATGCAT 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 87
PfoI TCCNGGA 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 277
Psp6I CCWGG 3 cut(s) 251, 598, 634
PspGI CCWGG 3 cut(s) 251, 598, 634
PspN4I GGNNCC 4 cut(s) 17, 337, 401, 525
PsuI RGATCY 1 cut(s) 399
PsyI GACNNNGTC 1 cut(s) 87
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 579
Sau3AI GATC 3 cut(s) 76, 399, 628
ScrFI CCNGG 3 cut(s) 253, 600, 636
SduI GDGCHC 1 cut(s) 612
SfaNI GCATC 2 cut(s) 130, 673
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse9I AATT 1 cut(s) 246
SsiI CCGC 1 cut(s) 644
SspMI CTAG 2 cut(s) 462, 542
StyD4I CCNGG 3 cut(s) 251, 598, 634
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 124, 640
TasI AATT 1 cut(s) 246
TatI WGTACW 1 cut(s) 108
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 2 cut(s) 363, 487
TseFI GTSAC 2 cut(s) 89, 325
Tsp45I GTSAC 2 cut(s) 89, 325
TspDTI ATGAA 2 cut(s) 423, 564
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 2 cut(s) 363, 487
Tth111I GACNNNGTC 1 cut(s) 87
XagI CCTNNNNNAGG 1 cut(s) 61
XspI CTAG 2 cut(s) 462, 542
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.