Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004863

Physical Location & Seq

Genomic Coordinates Forward (+)

33161133 .. 33161679

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGTAAGAAACCTGGTCTCTTGGAATGCAATGATTGCTGCTTATGAACAGAATAATGCAGGAAAGGAAGCAATAAATCTCTTTTGTAGGATCCAAAATGAAAATGTGGAGTATGACTATATCACAATAGTCGGTGTTATTTCAGCCTGTGCTAGCTTGGGTGCATTGAACACTGGGAAATGGTTGCATGAGTTGTCAAAAGGAAAGGCTTTGGAACCAATGTTTCACTCACAAATGCACTCATTGACATGTATGCAAAGTGTGGGAATGTTGATCTGGCCAAGGGCTTGTGCATCTCATGGTCATGGGGATGATGCTCTCATGCTTTTCTCAATGATGAAAGAAAAGGGTATTAAACCAAATAGTTTCACTTTTACAGCTGTTTTGACTGCTTGCAGGCACTCAGGTCTAGTAGATGAAGGGAGAAAGCATTTTGAGAGCATGATCAAAGACTACTCCCTTGTCCCTGGTGTAGAGCACTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

163

Amino Acids

18.07

Weight (kDa)

6.69

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	5 - 52	1.5e-07	PPR repeat family
PPR_2	PF13041	97 - 133	3.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30210
malus_domestica	MD17G1206900.v1.1
prunus_persica	Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1
pyrus_communis	pycom17g20970
rosa_chinensis	RchiOBHm_Chr2g0136451 RchiOBHm_Chr5g0054651 RchiOBHm_Chr5g0054891
rosa_laevigata	RLG00000034942
rosa_multiflora	Rmu_sc0001998.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025820 Rroxscaffold_1G00025830 Rroxscaffold_1G00026010 Rroxscaffold_1G00026310 Rroxscaffold_1G00026320 Rroxscaffold_2G00108280
rosa_rugosa	Rorug02G0330400 Rorug02G0330500 Rorug05G0287600
rosa_samantha	Rh2AG381500 Rh2AG381600 Rh2BG388200 Rh2BG388300 Rh2CG367800 Rh2CG367900 Rh2DG404600 Rh2DG404700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	88, 101
AcoI	YGGCCR	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	15, 469
AluBI	AGCT	2 cut(s)	159, 383
AluI	AGCT	2 cut(s)	159, 383
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	88, 101
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	41
AsuNHI	GCTAGC	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	17, 471
BclI	TGATCA	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	156, 413
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	17, 471
BmiI	GGNNCC	2 cut(s)	95, 219
BmrFI	CCNGG	2 cut(s)	17, 471
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	305, 307
BmtI	GCTAGC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	284, 469
Bse1I	ACTGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	17, 471
BseDI	CCNNGG	2 cut(s)	284, 469
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	452
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	283
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	3 cut(s)	93, 276, 447
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	95, 219
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	88, 101
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	284, 469
BssMI	GATC	3 cut(s)	93, 276, 447
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	17, 471
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	157, 397, 401
BstDEI	CTNAG	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	319
BstKTI	GATC	3 cut(s)	96, 279, 450
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	93, 276, 447
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	2 cut(s)	17, 471
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	15, 469
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	3 cut(s)	157, 397, 401
CsiI	ACCWGGT	1 cut(s)	15
CviAII	CATG	6 cut(s)	191, 252, 302, 308, 325, 445
CviJI	RGCY	6 cut(s)	149, 159, 212, 283, 290, 383
CviKI_1	RGCY	6 cut(s)	149, 159, 212, 283, 290, 383
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	3 cut(s)	95, 278, 449
DpnII	GATC	3 cut(s)	93, 276, 447
EaeI	YGGCCR	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	15, 469
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	6 cut(s)	194, 255, 305, 311, 328, 448
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	190, 251, 301, 307, 324, 444
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	156, 413
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	6 cut(s)	194, 255, 305, 311, 328, 448
HpyAV	CCTTC	1 cut(s)	416
HpyCH4V	TGCA	8 cut(s)	32, 62, 167, 190, 241, 259, 296, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	406
Hsp92II	CATG	6 cut(s)	194, 255, 305, 311, 328, 448
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	3 cut(s)	93, 276, 447
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	305, 307
MabI	ACCWGGT	1 cut(s)	15
MaeI	CTAG	2 cut(s)	156, 413
MalI	GATC	3 cut(s)	95, 278, 449
MboI	GATC	3 cut(s)	93, 276, 447
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	483
MlsI	TGGCCA	1 cut(s)	283
MluNI	TGGCCA	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	3 cut(s)	250, 306, 312
Msp20I	TGGCCA	1 cut(s)	283
MspA1I	CMGCKG	1 cut(s)	383
MspR9I	CCNGG	2 cut(s)	17, 471
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	17, 471
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	3 cut(s)	93, 276, 447
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	6 cut(s)	194, 255, 305, 311, 328, 448
NlaIV	GGNNCC	2 cut(s)	95, 219
NspI	RCATGY	1 cut(s)	255
PciI	ACATGT	1 cut(s)	251
PctI	GAATGC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	15, 469
PspGI	CCWGG	2 cut(s)	15, 469
PspN4I	GGNNCC	2 cut(s)	95, 219
PsuI	RGATCY	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	383
RseI	CAYNNNNRTG	3 cut(s)	250, 306, 312
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	93, 276, 447
ScrFI	CCNGG	2 cut(s)	17, 471
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	4 cut(s)	18, 161, 385, 412
SexAI	ACCWGGT	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	305, 307
SmiMI	CAYNNNNRTG	3 cut(s)	250, 306, 312
SspMI	CTAG	2 cut(s)	156, 413
StyD4I	CCNGG	2 cut(s)	15, 469
StyI	CCWWGG	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	63, 117, 356, 435
TspRI	CASTG	1 cut(s)	181
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	2 cut(s)	156, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.