Rorug02G0330400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004863
Physical Location & Seq
Forward (+)
40749030 .. 40749726
697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0330400.1

Sequence Viewer

Length: 339 bp
ATGGACCAAATGGTCGGTCAGACTCTCGGAACCTACATCCCTTTGAGCATGTGTAATTATCAACGCTGCCATCCTGTGAAGAATTCAGGAAGATGTAATAGACCCAAGACTACTAAATGGGTGGTTCCCCCCAGAAGAAGACTCAAGATAAATTTTGATGGGGCCTTTCGCAGCAATGATGGGATTGGGGGAGTGGGAGTAGTGGCTCGTGATGACACTGGTCGCTTTCGTGGAGCATGCTCTCGGAGGTTACCATTGTTAAGCTCGGCGCTACAAGCAGAGGCTGAAGCATGTAGAGCAGGGCTGCTCCTAGCCATACATCAAGCTGGCGTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

112

Amino Acids

12.28

Weight (kDa)

10.54

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 51 - 107 2.8e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AcsI RAATTY 2 cut(s) 82, 151
AcuI CTGAAG 1 cut(s) 306
AluBI AGCT 2 cut(s) 264, 326
AluI AGCT 2 cut(s) 264, 326
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 66, 171, 304
ApoI RAATTY 2 cut(s) 82, 151
ArsI GACNNNNNNTTYG 1 cut(s) 33
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 4, 162
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 145
BbvI GCAGC 3 cut(s) 53, 183, 291
BccI CCATC 3 cut(s) 78, 152, 173
BfaI CTAG 1 cut(s) 311
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 3 cut(s) 67, 172, 305
BlsI GCNGC 3 cut(s) 68, 173, 306
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 162
BmiI GGNNCC 3 cut(s) 31, 126, 163
BoxI GACNNNNGTC 1 cut(s) 219
BpiI GAAGAC 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 128
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 181
BseGI GGATG 2 cut(s) 36, 70
BseMI GCAATG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 53, 183, 291
BshFI GGCC 1 cut(s) 164
BsnI GGCC 1 cut(s) 164
BspANI GGCC 1 cut(s) 164
BspLI GGNNCC 3 cut(s) 31, 126, 163
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 223
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 238, 328
BstEII GGTNACC 1 cut(s) 249
BstF5I GGATG 2 cut(s) 36, 70
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 275, 296
BstNSI RCATGY 3 cut(s) 52, 240, 294
BstPAI GACNNNNGTC 1 cut(s) 219
BstPI GGTNACC 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 53, 183, 291
BstV2I GAAGAC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 2 cut(s) 36, 70
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 238, 328
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 4, 162
CviAII CATG 3 cut(s) 49, 237, 291
CviJI RGCY 7 cut(s) 164, 206, 264, 284, 304, 314, 326
CviKI_1 RGCY 7 cut(s) 164, 206, 264, 284, 304, 314, 326
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 306
Eco91I GGTNACC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 82
FaeI CATG 3 cut(s) 52, 240, 294
FaiI YATR 4 cut(s) 50, 238, 292, 317
FatI CATG 3 cut(s) 48, 236, 290
Fnu4HI GCNGC 3 cut(s) 67, 172, 305
FokI GGATG 2 cut(s) 23, 57
Fsp4HI GCNGC 3 cut(s) 67, 172, 305
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 270
GluI GCNGC 3 cut(s) 67, 172, 305
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 1 cut(s) 271
Hin1II CATG 3 cut(s) 52, 240, 294
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 2 cut(s) 22, 141
Hpy188I TCNGA 3 cut(s) 21, 29, 246
Hpy188III TCNNGA 3 cut(s) 87, 145, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 296
Hsp92II CATG 3 cut(s) 52, 240, 294
HspAI GCGC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 233, 312
LpnPI CCDG 6 cut(s) 72, 87, 145, 204, 285, 312
Lsp1109I GCAGC 3 cut(s) 53, 183, 291
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 249
MboII GAAGA 4 cut(s) 91, 102, 147, 150
MluCI AATT 3 cut(s) 55, 82, 151
MlyI GAGTC 2 cut(s) 16, 135
MnlI CCTC 3 cut(s) 240, 274, 327
MseI TTAA 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 275, 296
NlaIII CATG 3 cut(s) 52, 240, 294
NlaIV GGNNCC 3 cut(s) 31, 126, 163
NmeAIII GCCGAG 1 cut(s) 245
NspI RCATGY 3 cut(s) 52, 240, 294
PaeI GCATGC 1 cut(s) 240
PkrI GCNGC 3 cut(s) 68, 173, 306
PleI GAGTC 2 cut(s) 16, 135
PpsI GAGTC 2 cut(s) 16, 135
PshAI GACNNNNGTC 1 cut(s) 219
PspEI GGTNACC 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 31, 126, 163
PspPI GGNCC 2 cut(s) 4, 162
PstNI CAGNNNCTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 3 cut(s) 67, 172, 305
Sau96I GGNCC 2 cut(s) 4, 162
SchI GAGTC 2 cut(s) 16, 135
SetI ASST 5 cut(s) 35, 251, 266, 328, 338
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 1 cut(s) 240
Sse9I AATT 3 cut(s) 55, 82, 151
SspMI CTAG 1 cut(s) 311
TaqII GACCGA 1 cut(s) 5
TasI AATT 3 cut(s) 55, 82, 151
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 223
TseI GCWGC 3 cut(s) 66, 171, 304
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 82, 151
XceI RCATGY 3 cut(s) 52, 240, 294
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.