Rh2DG404700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004863
Physical Location & Seq
Forward (+)
58884497 .. 58885375
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG404700.1

Sequence Viewer

Length: 879 bp
ATGGTGGCTTCAGGTTCCCAACCAAATGTGGTTACACTGGTCAGCATCCTCCCTGCTTGTGCTAGTTTAGAATTTTTGGATTTAGGAAAACTGATTCACTTTCATGGAATTAAAGTTGGAGTTGACTCAGATATGTCATTCATGAATGCTTTGATTGCATTTTATGGTAAGTGTCGGAATCTTGAGACAGCAAGATCTTTATTTGATGGGATGGTAGTAAGAAACCTGGTCTCCTGGAATGCAATGATTGCTGCTTATGAACAGAATAATGCAGGGACGGAGGCAATAAAGCTCTTTCGTAGGATGCAAAATGAAAATGTGGACTACGACTATATCACAATAGTCAGTGTAATTTCAGCCTGTGCTAGCTTGGGTGCATTGAACACTGTGAAATGGTTGCATGAGCTTGTCAAAAGGAAAGGCTTTGGAACCAATGTTTCAGTCACAAAGGCACTCATTGACATGTATGCAAAGTGTGGGAATATTGATCTGGCCAAGAATGTTTTTCAGAAATTGCCTCATAGAAGTGTTGTATCCTGGACATCTATAATGGGGGCTTGTGCATCTCATGGTCATGGAGATGATGCTCTCATGCTTTTCTCAATGATGAAAGACCAGGGCATTAAACCAAATAGTTTCACTTTTACTGCTGTTTTGACTGCTTGTAGGCACTCAGGTCTAGTAGACGAAGGGAGAAAGCATTTTGAGAGCATGATTAAAGACTACTCCCCTGTCCCTGGTGTAGAGCACTATGCTTGTGTAGTTGATCTTCTTGGTCGAGCTGGTTGTTTGTTAGAAGCTTATAAGTTTATTCAGAGGATGCCGGTTGAGCCAGACATTGGTGTCTGGGGAGCTTTACTTAGTGCTTGCAGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

292

Amino Acids

32.03

Weight (kDa)

8.05

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 75 - 122 5.7e-09 PPR repeat family
PPR PF01535 77 - 107 3.7e-06 PPR repeat
PPR_2 PF13041 176 - 222 5.2e-14 PPR repeat family
PPR_3 PF13812 176 - 222 1.3e-06 Pentatricopeptide repeat domain
PPR PF01535 178 - 208 1.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 804
AasI GACNNNNNNGTC 1 cut(s) 842
AccB7I CCANNNNNTGG 1 cut(s) 839
AccI GTMKAC 1 cut(s) 684
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 737, 839
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 5 cut(s) 225, 233, 536, 615, 736
AluBI AGCT 6 cut(s) 292, 369, 406, 782, 800, 854
AluI AGCT 6 cut(s) 292, 369, 406, 782, 800, 854
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 2 cut(s) 179, 235
AoxI GGCC 1 cut(s) 492
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 365
BalI TGGCCA 1 cut(s) 494
BarI GAAGNNNNNNTAC 2 cut(s) 753, 785
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 1 cut(s) 238
BccI CCATC 2 cut(s) 200, 205
BciT130I CCWGG 5 cut(s) 227, 235, 538, 617, 738
BciVI GTATCC 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 179, 235
BfaI CTAG 3 cut(s) 63, 366, 680
BfuI GTATCC 1 cut(s) 544
BglII AGATCT 1 cut(s) 194
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 5 cut(s) 227, 235, 538, 617, 738
BmiI GGNNCC 2 cut(s) 16, 430
BmrFI CCNGG 5 cut(s) 227, 235, 538, 617, 738
BmsI GCATC 5 cut(s) 54, 294, 572, 574, 810
BmtI GCTAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 616, 736
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 737, 839
Bse118I RCCGGY 1 cut(s) 823
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 5 cut(s) 227, 235, 538, 617, 738
BseDI CCNNGG 2 cut(s) 616, 736
BseGI GGATG 4 cut(s) 45, 216, 309, 825
BseLI CCNNNNNNNGG 2 cut(s) 737, 839
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 141, 687
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 750
BsiSI CCGG 1 cut(s) 824
BslFI GGGAC 2 cut(s) 289, 719
BslI CCNNNNNNNGG 2 cut(s) 737, 839
BsmAI GTCTC 2 cut(s) 179, 235
BsmFI GGGAC 2 cut(s) 289, 719
BsmI GAATGC 2 cut(s) 151, 244
BsnI GGCC 1 cut(s) 494
Bso31I GGTCTC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 750
Bsp143I GATC 3 cut(s) 194, 487, 766
BspANI GGCC 1 cut(s) 494
BspCNI CTCAG 2 cut(s) 140, 686
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 16, 430
BspOI GCTAGC 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 1 cut(s) 823
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 823
BssECI CCNNGG 2 cut(s) 616, 736
BssMI GATC 3 cut(s) 194, 487, 766
Bst2UI CCWGG 5 cut(s) 227, 235, 538, 617, 738
Bst4CI ACNGT 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 367, 868
BstDEI CTNAG 3 cut(s) 127, 673, 860
BstF5I GGATG 4 cut(s) 45, 216, 309, 825
BstKTI GATC 3 cut(s) 197, 490, 769
BstMAI GTCTC 2 cut(s) 179, 235
BstMBI GATC 3 cut(s) 194, 487, 766
BstMWI GCNNNNNNNGC 3 cut(s) 155, 248, 829
BstNI CCWGG 5 cut(s) 227, 235, 538, 617, 738
BstNSI RCATGY 1 cut(s) 466
BstSCI CCNGG 5 cut(s) 225, 233, 536, 615, 736
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 1 cut(s) 494
BtsCI GGATG 4 cut(s) 45, 216, 309, 825
BtsIMutI CAGTG 3 cut(s) 35, 352, 384
Cac8I GCNNGC 2 cut(s) 367, 868
CciI TCATGA 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 823
CsiI ACCWGGT 1 cut(s) 225
CviAII CATG 8 cut(s) 104, 142, 401, 463, 569, 575, 592, 712
DdeI CTNAG 3 cut(s) 127, 673, 860
DpnI GATC 3 cut(s) 196, 489, 768
DpnII GATC 3 cut(s) 194, 487, 766
DrdI GACNNNNNNGTC 1 cut(s) 842
DseDI GACNNNNNNGTC 1 cut(s) 842
EaeI YGGCCR 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 235
EcoRII CCWGG 5 cut(s) 225, 233, 536, 615, 736
FaeI CATG 8 cut(s) 107, 145, 404, 466, 572, 578, 595, 715
FaqI GGGAC 2 cut(s) 289, 719
FatI CATG 8 cut(s) 103, 141, 400, 462, 568, 574, 591, 711
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 4 cut(s) 32, 223, 316, 832
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 3 cut(s) 63, 366, 680
GluI GCNGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 494
HapII CCGG 1 cut(s) 824
Hin1II CATG 8 cut(s) 107, 145, 404, 466, 572, 578, 595, 715
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 798
HinfI GANTC 3 cut(s) 94, 125, 178
HpaII CCGG 1 cut(s) 824
Hpy166II GTNNAC 3 cut(s) 124, 322, 685
Hpy188I TCNGA 4 cut(s) 130, 177, 510, 816
Hpy188III TCNNGA 2 cut(s) 142, 182
Hpy8I GTNNAC 3 cut(s) 124, 322, 685
HpyAV CCTTC 1 cut(s) 683
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 9 cut(s) 158, 242, 272, 307, 377, 400, 470, 563, 870
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 248, 829
HpyF3I CTNAG 3 cut(s) 127, 673, 860
Hsp92II CATG 8 cut(s) 107, 145, 404, 466, 572, 578, 595, 715
Kzo9I GATC 3 cut(s) 194, 487, 766
LmnI GCTCC 1 cut(s) 851
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 5 cut(s) 54, 294, 572, 574, 810
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 3 cut(s) 63, 366, 680
MaeIII GTNAC 2 cut(s) 31, 442
MalI GATC 3 cut(s) 196, 489, 768
MboI GATC 3 cut(s) 194, 487, 766
MboII GAAGA 1 cut(s) 761
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 750
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 4 cut(s) 71, 108, 351, 512
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 97, 155
MnlI CCTC 4 cut(s) 59, 274, 528, 810
Mox20I TGGCCA 1 cut(s) 494
MscI TGGCCA 1 cut(s) 494
MseI TTAA 3 cut(s) 111, 624, 717
MslI CAYNNNNRTG 5 cut(s) 102, 461, 525, 573, 579
Msp20I TGGCCA 1 cut(s) 494
MspI CCGG 1 cut(s) 824
MspR9I CCNGG 5 cut(s) 227, 235, 538, 617, 738
Mva1269I GAATGC 2 cut(s) 151, 244
MvaI CCWGG 5 cut(s) 227, 235, 538, 617, 738
MwoI GCNNNNNNNGC 3 cut(s) 155, 248, 829
NdeII GATC 3 cut(s) 194, 487, 766
NheI GCTAGC 1 cut(s) 365
NlaIII CATG 8 cut(s) 107, 145, 404, 466, 572, 578, 595, 715
NlaIV GGNNCC 2 cut(s) 16, 430
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 466
PagI TCATGA 1 cut(s) 141
PciI ACATGT 1 cut(s) 462
PctI GAATGC 2 cut(s) 151, 244
PfeI GAWTC 2 cut(s) 94, 178
PflMI CCANNNNNTGG 1 cut(s) 839
PfoI TCCNGGA 2 cut(s) 233, 536
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 462
PsiI TTATAA 1 cut(s) 804
Psp6I CCWGG 5 cut(s) 225, 233, 536, 615, 736
PspGI CCWGG 5 cut(s) 225, 233, 536, 615, 736
PspN4I GGNNCC 2 cut(s) 16, 430
PsuI RGATCY 1 cut(s) 194
RseI CAYNNNNRTG 5 cut(s) 102, 461, 525, 573, 579
SaqAI TTAA 3 cut(s) 111, 624, 717
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 3 cut(s) 194, 487, 766
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 5 cut(s) 227, 235, 538, 617, 738
SduI GDGCHC 1 cut(s) 750
SetI ASST 9 cut(s) 16, 228, 294, 371, 408, 679, 784, 802, 856
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 5 cut(s) 54, 294, 572, 574, 810
SmiMI CAYNNNNRTG 5 cut(s) 102, 461, 525, 573, 579
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 4 cut(s) 71, 108, 351, 512
SspI AATATT 1 cut(s) 484
SspMI CTAG 3 cut(s) 63, 366, 680
StyD4I CCNGG 5 cut(s) 225, 233, 536, 615, 736
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 778
TasI AATT 4 cut(s) 71, 108, 351, 512
TfiI GAWTC 2 cut(s) 94, 178
Tru1I TTAA 3 cut(s) 111, 624, 717
Tru9I TTAA 3 cut(s) 111, 624, 717
TscAI CASTG 3 cut(s) 42, 352, 391
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 6 cut(s) 92, 130, 158, 273, 327, 623
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 3 cut(s) 42, 352, 391
Van91I CCANNNNNTGG 1 cut(s) 839
XapI RAATTY 1 cut(s) 71
XceI RCATGY 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 684
XspI CTAG 3 cut(s) 63, 366, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.