RchiOBHm_Chr5g0054651

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004863
Physical Location & Seq
Reverse (-)
57292709 .. 57293434
726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33176

Sequence Viewer

Length: 510 bp
ATGGTCCCTACCATGGATTATGCAAGGAATATGTTCGATGCCATGCCTGAAAGAGAGGTATTTCTTTGGAACACCTTGATCAGGGGTAATGCTGATCGGGGAGCTTGTCATGAAGCCATAGTTTTGTACAGAAAAATCTCCTTGGTGAGTATGTATGCAAAGAATGGTGAAACTTTGAACTCAGAGCTGGTTTTTAATGAAATGGTTGTGAAGAACATAGTTTCCTGGACTGCAATGACAGCAGCCTATGTGAAAAATGGGTTCTATAAAGAAGGGTTGAGTCTTTTGCAAGACATGGTTGCTTCAGGTTCCCAACCAAATGTTGGTTACACTGTTGGAGTTGACTCAAGTATGTCACTCATGAATGCTTTGATTGCATTTTATGGTGAGTGTCGGAATCTTGAGACAGCAAGATCTTTATTTGATGGAATGGTAGTAAGAAACCAGGTCTCGTGGAATGCAATGATTGCTGCTTATGAACAGAATAATGCAGGAACGGAAGCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

169

Amino Acids

18.81

Weight (kDa)

4.99

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 74 - 103 4.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 323
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 3 cut(s) 13, 81, 323
AgsI TTSAA 1 cut(s) 178
AjnI CCWGG 2 cut(s) 224, 444
AloI GAACNNNNNNTCC 2 cut(s) 206, 238
AluBI AGCT 2 cut(s) 104, 187
AluI AGCT 2 cut(s) 104, 187
Alw26I GTCTC 2 cut(s) 398, 454
ApeKI GCWGC 2 cut(s) 242, 470
Asp700I GAANNNNTTC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 157, 179, 398
AvaII GGWCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 451
BbvI GCAGC 2 cut(s) 254, 457
BccI CCATC 1 cut(s) 419
BciT130I CCWGG 2 cut(s) 226, 446
BclI TGATCA 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 398, 454
BglII AGATCT 1 cut(s) 413
BisI GCNGC 2 cut(s) 243, 471
BlsI GCNGC 2 cut(s) 244, 472
Bme1390I CCNGG 2 cut(s) 226, 446
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 310
BmrFI CCNGG 2 cut(s) 226, 446
BmsI GCATC 1 cut(s) 28
BpuEI CTTGAG 2 cut(s) 331, 422
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 12, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 81, 323
Bse3DI GCAATG 2 cut(s) 240, 468
BseBI CCWGG 2 cut(s) 226, 446
BseDI CCNNGG 2 cut(s) 12, 141
BseLI CCNNNNNNNGG 3 cut(s) 13, 81, 323
BseMI GCAATG 2 cut(s) 240, 468
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 2 cut(s) 254, 457
BslI CCNNNNNNNGG 3 cut(s) 13, 81, 323
BsmAI GTCTC 2 cut(s) 398, 454
BsmI GAATGC 2 cut(s) 370, 463
Bso31I GGTCTC 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 3 cut(s) 78, 94, 413
Bsp19I CCATGG 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 194
BspHI TCATGA 2 cut(s) 109, 360
BspLI GGNNCC 2 cut(s) 6, 310
BspTNI GGTCTC 1 cut(s) 454
BsrDI GCAATG 2 cut(s) 240, 468
BsrGI TGTACA 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 12, 141
BssMI GATC 3 cut(s) 78, 94, 413
BssSI CACGAG 1 cut(s) 451
BssT1I CCWWGG 2 cut(s) 12, 141
Bst2BI CACGAG 1 cut(s) 451
Bst2UI CCWGG 2 cut(s) 226, 446
Bst4CI ACNGT 1 cut(s) 334
BstAPI GCANNNNNTGC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 79
BstKTI GATC 3 cut(s) 81, 97, 416
BstMAI GTCTC 2 cut(s) 398, 454
BstMBI GATC 3 cut(s) 78, 94, 413
BstMWI GCNNNNNNNGC 3 cut(s) 239, 374, 467
BstNI CCWGG 2 cut(s) 226, 446
BstSCI CCNGG 2 cut(s) 224, 444
BstV1I GCAGC 2 cut(s) 254, 457
BstX2I RGATCY 1 cut(s) 413
BstYI RGATCY 1 cut(s) 413
BtgI CCRYGG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 330
CciI TCATGA 2 cut(s) 109, 360
Cfr13I GGNCC 1 cut(s) 4
CsiI ACCWGGT 1 cut(s) 444
Csp6I GTAC 1 cut(s) 127
CviAII CATG 5 cut(s) 13, 43, 110, 295, 361
CviJI RGCY 4 cut(s) 104, 116, 187, 245
CviKI_1 RGCY 4 cut(s) 104, 116, 187, 245
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 181
DpnI GATC 3 cut(s) 80, 96, 415
DpnII GATC 3 cut(s) 78, 94, 413
Eco130I CCWWGG 2 cut(s) 12, 141
Eco31I GGTCTC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 288
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 224, 444
EcoT14I CCWWGG 2 cut(s) 12, 141
ErhI CCWWGG 2 cut(s) 12, 141
FaeI CATG 5 cut(s) 16, 46, 113, 298, 364
FatI CATG 5 cut(s) 12, 42, 109, 294, 360
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 243, 471
Fsp4HI GCNGC 2 cut(s) 243, 471
GluI GCNGC 2 cut(s) 243, 471
Hin1II CATG 5 cut(s) 16, 46, 113, 298, 364
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 3 cut(s) 280, 344, 397
HphI GGTGA 3 cut(s) 157, 179, 398
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 184, 396
Hpy188III TCNNGA 3 cut(s) 110, 361, 401
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 7 cut(s) 23, 158, 233, 289, 377, 461, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 374, 467
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 5 cut(s) 16, 46, 113, 298, 364
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 3 cut(s) 78, 94, 413
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 9 cut(s) 60, 67, 173, 211, 238, 291, 431, 458, 477
Lsp1109I GCAGC 2 cut(s) 254, 457
LweI GCATC 1 cut(s) 28
MabI ACCWGGT 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 326, 354
MalI GATC 3 cut(s) 80, 96, 415
MboI GATC 3 cut(s) 78, 94, 413
MboII GAAGA 1 cut(s) 223
MflI RGATCY 1 cut(s) 413
MlyI GAGTC 2 cut(s) 289, 338
MmeI TCCRAC 2 cut(s) 316, 374
MnlI CCTC 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 226, 446
Mva1269I GAATGC 2 cut(s) 370, 463
MvaI CCWGG 2 cut(s) 226, 446
MwoI GCNNNNNNNGC 3 cut(s) 239, 374, 467
NcoI CCATGG 1 cut(s) 12
NdeII GATC 3 cut(s) 78, 94, 413
NlaIII CATG 5 cut(s) 16, 46, 113, 298, 364
NlaIV GGNNCC 2 cut(s) 6, 310
NmuCI GTSAC 1 cut(s) 354
PagI TCATGA 2 cut(s) 109, 360
PctI GAATGC 2 cut(s) 370, 463
PdmI GAANNNNTTC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 397
PflMI CCANNNNNTGG 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 224
PkrI GCNGC 2 cut(s) 244, 472
PleI GAGTC 2 cut(s) 288, 338
PpsI GAGTC 2 cut(s) 288, 338
Psp6I CCWGG 2 cut(s) 224, 444
PspGI CCWGG 2 cut(s) 224, 444
PspN4I GGNNCC 2 cut(s) 6, 310
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 413
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 243, 471
Sau3AI GATC 3 cut(s) 78, 94, 413
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 289, 338
ScrFI CCNGG 2 cut(s) 226, 446
SetI ASST 6 cut(s) 60, 77, 106, 189, 310, 450
SexAI ACCWGGT 1 cut(s) 444
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 2 cut(s) 346, 401
SmoI CTYRAG 2 cut(s) 346, 401
StyD4I CCNGG 2 cut(s) 224, 444
StyI CCWWGG 2 cut(s) 12, 141
TaaI ACNGT 1 cut(s) 334
TaqI TCGA 1 cut(s) 36
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 2 cut(s) 242, 470
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 126, 213, 377, 492
TspRI CASTG 1 cut(s) 337
Van91I CCANNNNNTGG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.