Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004863

Physical Location & Seq

Genomic Coordinates Forward (+)

57202940 .. 57203449

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG381600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTGGCTTCAGGTTCCCAACCAAATGTGGTTACACTGGTCAGCATCCTCCCTGCTTGTGCTAGTTTAGAATTTTTGGATTTAGGAAAACTGATTCACTATCATGGAATTAATGTTGGAGTTGACTCAGATATGTCATTCATGAATGCTTTGATTGCATTTTATGGTAAGTGTCGGAATCTTGAGACAGCAAGATCTTTATTTGATGGGATGGTAGTAAGAAACCTGGTCTCGTGGAATGCAATGATTGCTGCTTATGAACAGAATAATGCAGGGACAGAGGCAATAAAGCTCTTTCGTAGGATGCAAAATGAAAATGTGGACTATGACTATATCACAATAGTCAGTGTAATTTCAGCCTGTGCTAGCTTGGGTGCATTGAACACTGGGAAATGGTTGCATGAGCTTGTCAAAAGGAAAGGCTTTGGAACCAATGTTTCAGTCACAAAGGCACTCATTGACATGTATGCAAAGTGTGGGAATATTGATCTGGCCAAGAATGTTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

169

Amino Acids

18.5

Weight (kDa)

7.66

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	75 - 122	2.2e-09	PPR repeat family
PPR	PF01535	77 - 107	1.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30210
malus_domestica	MD17G1206900.v1.1
prunus_persica	Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1
pyrus_communis	pycom17g20970
rosa_chinensis	RchiOBHm_Chr2g0136451 RchiOBHm_Chr5g0054651 RchiOBHm_Chr5g0054891
rosa_laevigata	RLG00000034942
rosa_multiflora	Rmu_sc0001998.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025820 Rroxscaffold_1G00025830 Rroxscaffold_1G00026010 Rroxscaffold_1G00026310 Rroxscaffold_1G00026320 Rroxscaffold_2G00108280
rosa_rugosa	Rorug02G0330400 Rorug02G0330500 Rorug05G0287600
rosa_samantha	Rh2AG381500 Rh2AG381600 Rh2BG388200 Rh2BG388300 Rh2CG367800 Rh2CG367900 Rh2DG404600 Rh2DG404700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	292, 369, 406
AluI	AGCT	3 cut(s)	292, 369, 406
Alw26I	GTCTC	2 cut(s)	179, 235
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	71
AseI	ATTAAT	1 cut(s)	111
AsuNHI	GCTAGC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	494
BauI	CACGAG	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	200, 205
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	179, 235
BfaI	CTAG	2 cut(s)	63, 366
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	16, 430
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	54, 294
BmtI	GCTAGC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	42, 391
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	227
BseGI	GGATG	3 cut(s)	45, 216, 309
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	42, 391
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	289
BsmAI	GTCTC	2 cut(s)	179, 235
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	2 cut(s)	151, 244
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	194, 487
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	1 cut(s)	140
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	16, 430
BspOI	GCTAGC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	2 cut(s)	42, 391
BssMI	GATC	2 cut(s)	194, 487
BssSI	CACGAG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	45, 216, 309
BstKTI	GATC	2 cut(s)	197, 490
BstMAI	GTCTC	2 cut(s)	179, 235
BstMBI	GATC	2 cut(s)	194, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 248
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	45, 216, 309
BtsIMutI	CAGTG	3 cut(s)	35, 352, 384
Cac8I	GCNNGC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	141
CsiI	ACCWGGT	1 cut(s)	225
CviAII	CATG	4 cut(s)	104, 142, 401, 463
CviJI	RGCY	7 cut(s)	8, 292, 359, 369, 406, 423, 494
CviKI_1	RGCY	7 cut(s)	8, 292, 359, 369, 406, 423, 494
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	196, 489
DpnII	GATC	2 cut(s)	194, 487
EaeI	YGGCCR	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	225
FaeI	CATG	4 cut(s)	107, 145, 404, 466
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	4 cut(s)	103, 141, 400, 462
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	3 cut(s)	32, 223, 316
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	2 cut(s)	63, 366
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	494
Hin1II	CATG	4 cut(s)	107, 145, 404, 466
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	94, 125, 178
Hpy166II	GTNNAC	2 cut(s)	124, 322
Hpy188I	TCNGA	2 cut(s)	130, 177
Hpy188III	TCNNGA	2 cut(s)	142, 182
Hpy8I	GTNNAC	2 cut(s)	124, 322
HpyCH4V	TGCA	7 cut(s)	158, 242, 272, 307, 377, 400, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 248
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	107, 145, 404, 466
Kzo9I	GATC	2 cut(s)	194, 487
LpnPI	CCDG	8 cut(s)	23, 66, 212, 239, 258, 372, 373, 476
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	54, 294
MabI	ACCWGGT	1 cut(s)	225
MaeI	CTAG	2 cut(s)	63, 366
MaeIII	GTNAC	2 cut(s)	31, 442
MalI	GATC	2 cut(s)	196, 489
MboI	GATC	2 cut(s)	194, 487
MflI	RGATCY	1 cut(s)	194
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	3 cut(s)	71, 108, 351
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	97, 155
MnlI	CCTC	2 cut(s)	59, 274
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	2 cut(s)	102, 461
Msp20I	TGGCCA	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	227
Mva1269I	GAATGC	2 cut(s)	151, 244
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	155, 248
NdeII	GATC	2 cut(s)	194, 487
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	4 cut(s)	107, 145, 404, 466
NlaIV	GGNNCC	2 cut(s)	16, 430
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	466
PagI	TCATGA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	462
PctI	GAATGC	2 cut(s)	151, 244
PfeI	GAWTC	2 cut(s)	94, 178
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PscI	ACATGT	1 cut(s)	462
PshBI	ATTAAT	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	16, 430
PsuI	RGATCY	1 cut(s)	194
RseI	CAYNNNNRTG	2 cut(s)	102, 461
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	194, 487
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	5 cut(s)	16, 228, 294, 371, 408
SexAI	ACCWGGT	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	54, 294
SmiMI	CAYNNNNRTG	2 cut(s)	102, 461
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	71, 108, 351
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	2 cut(s)	63, 366
StyD4I	CCNGG	1 cut(s)	225
TasI	AATT	3 cut(s)	71, 108, 351
TfiI	GAWTC	2 cut(s)	94, 178
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	42, 352, 391
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	130, 158, 273, 327
TspRI	CASTG	3 cut(s)	42, 352, 391
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	1 cut(s)	466
XspI	CTAG	2 cut(s)	63, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.