Rroxscaffold_1G00026310

Pentatricopeptide repeat domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004863
Physical Location & Seq
Forward (+)
33158519 .. 33160972
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026310.1

Sequence Viewer

Length: 489 bp
ATGAGGGTGTCCGACCTAAAGAGTGTTACAAATCAAGCTGGCAACCTTAAATGCATCCATGCTAAAATCATTGAAACTGGGTACTATCAAAACCTCCCCCTCTTAAACAAAGCTTGTAACTCTGGCTTCTTCTATGGCCCCACATGGACTACACGGAGCCTGTTCAATGCCATGCCTGAAAGAGATGTTTGGAACACCTTGATAAGGGGTTATGCTGATCGGGGACCTTGTCACGAAGCCATAGCTTTGTACAGAAAAATGCATCGAATTCGGTCTTGTGCGGTGCAGTCGGCTTTGAGAGAAGGGAAAGAAGTGCATTGTAACATAATTAAAAATGGGTTTAGTTCTGATGTATTTGTTCAGAGCTCCTTGGTGAGTATGTATGCACAGAACGGTGAAACTTTGAACTCAGAACTTGTTATTAACGAAATGGTTGAGAAGAACATAATTTCCTGGACTGCAATGATAGCAGGCTATGTGAAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

162

Amino Acids

18.23

Weight (kDa)

9.01

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 63 - 89 6.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 267
AfaI GTAC 2 cut(s) 83, 251
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 3 cut(s) 74, 166, 406
AjnI CCWGG 1 cut(s) 452
AloI GAACNNNNNNTCC 2 cut(s) 434, 466
AluBI AGCT 4 cut(s) 38, 113, 245, 366
AluI AGCT 4 cut(s) 38, 113, 245, 366
Alw21I GWGCWC 1 cut(s) 368
AoxI GGCC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 137, 224
AsuHPI GGTGA 2 cut(s) 385, 407
AvaII GGWCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 368
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 454
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 137, 224
BmiI GGNNCC 3 cut(s) 139, 158, 225
BmrFI CCNGG 1 cut(s) 454
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 63, 271
BmuI ACTGGG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 468
BseBI CCWGG 1 cut(s) 454
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 468
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 305
BshFI GGCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 368
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 368
Bsp1407I TGTACA 1 cut(s) 249
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 422
BspLI GGNNCC 3 cut(s) 139, 158, 225
BsrDI GCAATG 1 cut(s) 468
BsrGI TGTACA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 454
Bst4CI ACNGT 1 cut(s) 395
BstAUI TGTACA 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 40, 472
BstDEI CTNAG 1 cut(s) 409
BstENI CCTNNNNNAGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 54
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 467
BstNI CCWGG 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 452
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 40, 472
Cfr13I GGNCC 2 cut(s) 137, 224
Csp6I GTAC 2 cut(s) 82, 250
CviAII CATG 3 cut(s) 59, 144, 172
CviQI GTAC 2 cut(s) 82, 250
DdeI CTNAG 1 cut(s) 409
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 366
EcoNI CCTNNNNNAGG 1 cut(s) 202
EcoO109I RGGNCCY 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 369
EcoT22I ATGCAT 2 cut(s) 56, 264
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 3 cut(s) 62, 147, 175
FaqI GGGAC 1 cut(s) 237
FatI CATG 3 cut(s) 58, 143, 171
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 368
HaeIII GGCC 1 cut(s) 138
Hin1II CATG 3 cut(s) 62, 147, 175
HindIII AAGCTT 1 cut(s) 111
HphI GGTGA 2 cut(s) 385, 407
Hpy188I TCNGA 4 cut(s) 13, 349, 363, 412
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 296, 475
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4V TGCA 6 cut(s) 54, 262, 286, 316, 386, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 467
HpyF3I CTNAG 1 cut(s) 409
Hsp92II CATG 3 cut(s) 62, 147, 175
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 156, 371
LpnPI CCDG 8 cut(s) 24, 63, 108, 173, 189, 439, 456, 466
LweI GCATC 2 cut(s) 63, 271
MaeIII GTNAC 4 cut(s) 25, 116, 230, 320
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 121, 451
MhlI GDGCHC 1 cut(s) 368
MluCI AATT 3 cut(s) 267, 327, 447
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 104, 110
Mph1103I ATGCAT 2 cut(s) 56, 264
MseI TTAA 4 cut(s) 48, 104, 330, 423
MspR9I CCNGG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 454
MwoI GCNNNNNNNGC 1 cut(s) 467
NdeII GATC 1 cut(s) 217
NlaIII CATG 3 cut(s) 62, 147, 175
NlaIV GGNNCC 3 cut(s) 139, 158, 225
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 2 cut(s) 56, 264
PflFI GACNNNGTC 1 cut(s) 228
PfoI TCCNGGA 1 cut(s) 452
PpuMI RGGWCCY 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 452
PspGI CCWGG 1 cut(s) 452
PspN4I GGNNCC 3 cut(s) 139, 158, 225
PspPI GGNCC 2 cut(s) 137, 224
PspPPI RGGWCCY 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 228
RsaI GTAC 2 cut(s) 83, 251
RsaNI GTAC 2 cut(s) 82, 250
SacI GAGCTC 1 cut(s) 368
SaqAI TTAA 4 cut(s) 48, 104, 330, 423
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 2 cut(s) 137, 224
ScrFI CCNGG 1 cut(s) 454
SduI GDGCHC 1 cut(s) 368
SetI ASST 9 cut(s) 18, 40, 48, 96, 115, 200, 229, 247, 368
SfaNI GCATC 2 cut(s) 63, 271
SinI GGWCC 1 cut(s) 224
Sse9I AATT 3 cut(s) 267, 327, 447
SsiI CCGC 1 cut(s) 281
SstI GAGCTC 1 cut(s) 368
StyD4I CCNGG 1 cut(s) 452
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 1 cut(s) 395
TaqI TCGA 1 cut(s) 265
TaqII GACCGA 1 cut(s) 261
TasI AATT 3 cut(s) 267, 327, 447
TatI WGTACW 1 cut(s) 249
Tru1I TTAA 4 cut(s) 48, 104, 330, 423
Tru9I TTAA 4 cut(s) 48, 104, 330, 423
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 169
Tth111I GACNNNGTC 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 224
XagI CCTNNNNNAGG 1 cut(s) 202
XapI RAATTY 1 cut(s) 267
Zsp2I ATGCAT 2 cut(s) 56, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.