Rh2BG388200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004863
Physical Location & Seq
Forward (+)
55272230 .. 55272589
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG388200.1

Sequence Viewer

Length: 360 bp
ATGGTCCCTACCATGGACTATGCACGGAGCCTGTTCGATGCCATGCCTGAAAGAGATCTCTTTCTTTGGAACACCTTGATAAGGGGTTATGCTGATCGAGAACCTTGTCATGAAGCCATAGTTTTTTACAGAAAAATGCATCAAAGGGGTTTATCACCCGATAACTATACTTTTCCTTTTGTAGTTCAGTCTTGTGCGCTGCAATCGGCTTTGAGAGAAGGGAAACAAGTGGTTAAAAATGGGTTTAAGTCTGATGTATTTGTTCAGAGCTCTTTGGTGAGTATGTATACACAGAATGGTGAAACTTTGAATTCAGAGCTTGTTTTTAACGAAATGGTTGTGAGGAACATAGTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

119

Amino Acids

13.72

Weight (kDa)

6.08

Isoelectric Point (pI)

64.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 19 - 65 7.8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 287
AcsI RAATTY 1 cut(s) 310
AfiI CCNNNNNNNGG 2 cut(s) 13, 81
AgsI TTSAA 1 cut(s) 310
AloI GAACNNNNNNTCC 1 cut(s) 338
AluBI AGCT 2 cut(s) 270, 319
AluI AGCT 2 cut(s) 270, 319
Alw21I GWGCWC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 310
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 147, 289, 311
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 186
BfaI CTAG 1 cut(s) 358
BglII AGATCT 1 cut(s) 55
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 29
BmsI GCATC 2 cut(s) 28, 148
BsaJI CCNNGG 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 81
BseDI CCNNGG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 13, 81
BseXI GCAGC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 13, 81
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 55, 94
Bsp19I CCATGG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 6, 29
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 55, 94
BssNAI GTATAC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 12
Bst1107I GTATAC 1 cut(s) 288
BstDSI CCRYGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 58, 97
BstMBI GATC 2 cut(s) 55, 94
BstV1I GCAGC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 12
CciI TCATGA 1 cut(s) 109
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 3 cut(s) 13, 43, 110
CviJI RGCY 5 cut(s) 30, 116, 209, 270, 319
CviKI_1 RGCY 5 cut(s) 30, 116, 209, 270, 319
DpnI GATC 2 cut(s) 57, 96
DpnII GATC 2 cut(s) 55, 94
Ecl136II GAGCTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 270
EcoICRI GAGCTC 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 16, 46, 113
FatI CATG 3 cut(s) 12, 42, 109
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 358
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 199
Hin1II CATG 3 cut(s) 16, 46, 113
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HphI GGTGA 3 cut(s) 147, 289, 311
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 3 cut(s) 253, 267, 316
Hpy188III TCNNGA 2 cut(s) 98, 110
Hpy8I GTNNAC 1 cut(s) 288
HpyAV CCTTC 1 cut(s) 212
HpyCH4V TGCA 3 cut(s) 23, 139, 202
Hsp92II CATG 3 cut(s) 16, 46, 113
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 2 cut(s) 55, 94
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 2 cut(s) 44, 60
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 2 cut(s) 28, 148
MaeI CTAG 1 cut(s) 358
MalI GATC 2 cut(s) 57, 96
MboI GATC 2 cut(s) 55, 94
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 1 cut(s) 310
MnlI CCTC 1 cut(s) 336
Mph1103I ATGCAT 1 cut(s) 141
MseI TTAA 3 cut(s) 234, 246, 327
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 55, 94
NlaIII CATG 3 cut(s) 16, 46, 113
NlaIV GGNNCC 2 cut(s) 6, 29
NsiI ATGCAT 1 cut(s) 141
PagI TCATGA 1 cut(s) 109
PkrI GCNGC 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 6, 29
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 55
SacI GAGCTC 1 cut(s) 272
SaqAI TTAA 3 cut(s) 234, 246, 327
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 2 cut(s) 55, 94
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 272
SetI ASST 4 cut(s) 77, 106, 272, 321
SfaNI GCATC 2 cut(s) 28, 148
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 358
SstI GAGCTC 1 cut(s) 272
StyI CCWWGG 1 cut(s) 12
TaqI TCGA 2 cut(s) 36, 97
TasI AATT 1 cut(s) 310
Tru1I TTAA 3 cut(s) 234, 246, 327
Tru9I TTAA 3 cut(s) 234, 246, 327
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 79
XapI RAATTY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 287
XspI CTAG 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.