Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004863

Physical Location & Seq

Genomic Coordinates Forward (+)

55272787 .. 55273533

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG388300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCATTCATGAATGCTTTGATTGCATTTTATGGTAAGTGTCGGAATCTTGAGACAGCAAGATCTTTATTTGATGGGATGGTAGTAAGAAACCTGGTCTCGTGGAATGCAATGATTGCTGCTTATGAACAGAATAATGCAGGGACGGAGGCAATAAAGCTCTTTCGTAGGATGCAAAATGAAAATGTGGACTATGACTATATCACAATAGTCAGTGTAATTTCAGCCTGTGCTAGCTTGGGTGCATTGAACACTGGGAAATGGTTGCATGAGCTTGTCAAAAGGAAAGGCTTTGGAACCAATGTTTCAGTCACAAAGGCACTCATTGACATGTATGCAAAGTGTGGGAATATTGATCTGGCCAAGAATGTTTTTCAGAAATTGCCTCATAGAAGTGTTGTGTCCTGGACATCTATAATAGGGGCTTGTGCATCTCATGGTCATGGAGATGATGCTCTCATGCTTTTCTCAATGAGGAAAGACCAGGGCATTAAGCCAAATAGTTTCACTTTTACCGCTGTTTTGACCGCTTGTAGGCACTCAGGTCTAGTAGATGAAGGAAGAAAGCATTTTGAGAGCATGATTAAAGACTACTCCCTTGTCCCTGGTGTAGAGCACTATGCTTGTGTAGTTGATCTTCTTGGTCGAGCTGGTTGTTTGTTAGAAGCTTATAAGTTTATTCAGAGGATGCCGGTTGAGCCAGACATTGGTGTCTGGGGAGCTTTACTTAGTGCTTGCAGGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

248

Amino Acids

27.45

Weight (kDa)

8.75

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	31 - 78	4.4e-09	PPR repeat family
PPR	PF01535	33 - 63	2.9e-06	PPR repeat
PPR_2	PF13041	132 - 178	7.8e-13	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30210
malus_domestica	MD17G1206900.v1.1
prunus_persica	Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1 Prupe.3G081600_v2.0.a1
pyrus_communis	pycom17g20970
rosa_chinensis	RchiOBHm_Chr2g0136451 RchiOBHm_Chr5g0054651 RchiOBHm_Chr5g0054891
rosa_laevigata	RLG00000034942
rosa_multiflora	Rmu_sc0001998.1_g000003
rosa_roxburghii	Rroxscaffold_1G00025820 Rroxscaffold_1G00025830 Rroxscaffold_1G00026010 Rroxscaffold_1G00026310 Rroxscaffold_1G00026320 Rroxscaffold_2G00108280
rosa_rugosa	Rorug02G0330400 Rorug02G0330500 Rorug05G0287600
rosa_samantha	Rh2AG381500 Rh2AG381600 Rh2BG388200 Rh2BG388300 Rh2CG367800 Rh2CG367900 Rh2DG404600 Rh2DG404700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AasI	GACNNNNNNGTC	1 cut(s)	710
AccB7I	CCANNNNNTGG	1 cut(s)	707
AciI	CCGC	2 cut(s)	516, 528
AcoI	YGGCCR	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	534, 707
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	4 cut(s)	93, 404, 483, 604
AluBI	AGCT	6 cut(s)	160, 237, 274, 650, 668, 722
AluI	AGCT	6 cut(s)	160, 237, 274, 650, 668, 722
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	2 cut(s)	47, 103
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	119
AsuNHI	GCTAGC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	362
BarI	GAAGNNNNNNTAC	2 cut(s)	621, 653
BauI	CACGAG	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	68, 73
BciT130I	CCWGG	4 cut(s)	95, 406, 485, 606
BcoDI	GTCTC	2 cut(s)	47, 103
BfaI	CTAG	2 cut(s)	234, 548
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	4 cut(s)	95, 406, 485, 606
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	4 cut(s)	95, 406, 485, 606
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	4 cut(s)	162, 440, 442, 678
BmtI	GCTAGC	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	484, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 707
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	4 cut(s)	95, 406, 485, 606
BseDI	CCNNGG	2 cut(s)	484, 604
BseGI	GGATG	3 cut(s)	84, 177, 693
BseLI	CCNNNNNNNGG	2 cut(s)	534, 707
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	692
BslFI	GGGAC	2 cut(s)	157, 587
BslI	CCNNNNNNNGG	2 cut(s)	534, 707
BsmAI	GTCTC	2 cut(s)	47, 103
BsmFI	GGGAC	2 cut(s)	157, 587
BsmI	GAATGC	2 cut(s)	19, 112
BsnI	GGCC	1 cut(s)	362
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	62, 355, 634
BspACI	CCGC	2 cut(s)	516, 528
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	554
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	298
BspOI	GCTAGC	1 cut(s)	237
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	259
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	2 cut(s)	484, 604
BssMI	GATC	3 cut(s)	62, 355, 634
BssSI	CACGAG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	4 cut(s)	95, 406, 485, 606
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	235, 736
BstDEI	CTNAG	2 cut(s)	541, 728
BstF5I	GGATG	3 cut(s)	84, 177, 693
BstKTI	GATC	3 cut(s)	65, 358, 637
BstMAI	GTCTC	2 cut(s)	47, 103
BstMBI	GATC	3 cut(s)	62, 355, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 116, 697
BstNI	CCWGG	4 cut(s)	95, 406, 485, 606
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	4 cut(s)	93, 404, 483, 604
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	84, 177, 693
BtsIMutI	CAGTG	2 cut(s)	220, 252
Cac8I	GCNNGC	2 cut(s)	235, 736
CciI	TCATGA	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	691
CsiI	ACCWGGT	1 cut(s)	93
CviAII	CATG	7 cut(s)	10, 269, 331, 437, 443, 460, 580
DdeI	CTNAG	2 cut(s)	541, 728
DpnI	GATC	3 cut(s)	64, 357, 636
DpnII	GATC	3 cut(s)	62, 355, 634
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
EaeI	YGGCCR	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	103
EcoRII	CCWGG	4 cut(s)	93, 404, 483, 604
FaeI	CATG	7 cut(s)	13, 272, 334, 440, 446, 463, 583
FaqI	GGGAC	2 cut(s)	157, 587
FatI	CATG	7 cut(s)	9, 268, 330, 436, 442, 459, 579
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	91, 184, 700
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	234, 548
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	692
Hin1II	CATG	7 cut(s)	13, 272, 334, 440, 446, 463, 583
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	692
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	45, 378, 684
Hpy188III	TCNNGA	2 cut(s)	10, 50
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	551
HpyCH4V	TGCA	9 cut(s)	26, 110, 140, 175, 245, 268, 338, 431, 738
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 116, 697
HpyF3I	CTNAG	2 cut(s)	541, 728
Hsp92II	CATG	7 cut(s)	13, 272, 334, 440, 446, 463, 583
Kzo9I	GATC	3 cut(s)	62, 355, 634
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	4 cut(s)	162, 440, 442, 678
MabI	ACCWGGT	1 cut(s)	93
MaeI	CTAG	2 cut(s)	234, 548
MaeIII	GTNAC	1 cut(s)	310
MalI	GATC	3 cut(s)	64, 357, 636
MboI	GATC	3 cut(s)	62, 355, 634
MboII	GAAGA	2 cut(s)	573, 629
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	618
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	219, 380
MluNI	TGGCCA	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	23
MnlI	CCTC	4 cut(s)	142, 396, 468, 678
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	2 cut(s)	492, 585
MslI	CAYNNNNRTG	4 cut(s)	329, 393, 441, 447
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	692
MspR9I	CCNGG	4 cut(s)	95, 406, 485, 606
Mva1269I	GAATGC	2 cut(s)	19, 112
MvaI	CCWGG	4 cut(s)	95, 406, 485, 606
MwoI	GCNNNNNNNGC	3 cut(s)	23, 116, 697
NdeII	GATC	3 cut(s)	62, 355, 634
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	7 cut(s)	13, 272, 334, 440, 446, 463, 583
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	310
NspI	RCATGY	1 cut(s)	334
PagI	TCATGA	1 cut(s)	9
PciI	ACATGT	1 cut(s)	330
PctI	GAATGC	2 cut(s)	19, 112
PfeI	GAWTC	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	707
PfoI	TCCNGGA	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	121
PscI	ACATGT	1 cut(s)	330
PsiI	TTATAA	1 cut(s)	672
Psp6I	CCWGG	4 cut(s)	93, 404, 483, 604
PspGI	CCWGG	4 cut(s)	93, 404, 483, 604
PspN4I	GGNNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	62
RseI	CAYNNNNRTG	4 cut(s)	329, 393, 441, 447
SaqAI	TTAA	2 cut(s)	492, 585
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	62, 355, 634
ScrFI	CCNGG	4 cut(s)	95, 406, 485, 606
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	8 cut(s)	96, 162, 239, 276, 547, 652, 670, 724
SexAI	ACCWGGT	1 cut(s)	93
SfaNI	GCATC	4 cut(s)	162, 440, 442, 678
SmiMI	CAYNNNNRTG	4 cut(s)	329, 393, 441, 447
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	219, 380
SsiI	CCGC	2 cut(s)	516, 528
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	2 cut(s)	234, 548
StyD4I	CCNGG	4 cut(s)	93, 404, 483, 604
TaqI	TCGA	1 cut(s)	646
TasI	AATT	2 cut(s)	219, 380
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	492, 585
Tru9I	TTAA	2 cut(s)	492, 585
TscAI	CASTG	2 cut(s)	220, 259
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	4 cut(s)	26, 141, 195, 570
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	220, 259
Van91I	CCANNNNNTGG	1 cut(s)	707
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	2 cut(s)	234, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.