RchiOBHm_Chr3g0454631

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
4673454 .. 4675335
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42163

Sequence Viewer

Length: 1272 bp
ATGAGTGTTCTTCAATGTATTTTTTCTCAGGTCTTTGAGCCTCCGTGGTCGTTACGGACTCGTTGGCTTAATTGCTTGAGTCAAATGCGTAGTATGGACATTAGATGCTCCCATATTTATCGGGAGGGGAACACGGTTGCAGACTCTATGGCAAATCTGGGTTTGAGCTCTTCATCTTTAAAGTGGTTTGCTTCCCCGCCTCCAGTGATCTGGTTACCTTTGCATTTTGACACGGTCGGTCTTCCTTACCAGCGTGGTGTTGCAAGTCTCCCTTCATTGAACCTGGAAGGTGTTGCTCTGTTTTACGCAGTGGGTGGGGCTGCTTGCAAATCTCTCATTGATGGGTGCGATGATGTTTTCCTCAGCAGCTTTATTAATATTTTCATCTGTCCTTCCACTGTTCACAATAAAGCTAATGGTGACTTTGTCGGCTGCTGCTCTCGGTGTGGAGCATTGCTTTCCAATTTTATGGTGGTGTTCTGCTTTCCGCGTCCCCACAACATTGCTAGAAAACTCCTGCAGTTTTGTTTTTGTATGGCTTTCATTGCTGAGAAAGCTGAATGGATCATATATGTTACTGATGTTGGCCAGCAGCAACACTTTGATATGTTTTTCAAGGCAGCTACGCTTGCAGGTTGGCTTCCAATTGATGGCTCGTACCCGAAAGTTAGCCATGTTGGTTTTGGTGTTGTTCTTGGAGAAGATGGTAAACGATTACGGACTCGCTCTTCTGATGATGTGGTTCGATTGATTGATTTAATTGATGAAGCCAAGAGCCGAAGCAAAACAAGTCTTGTCGAGCGTGGTAAGAGTGAAGACTGGCTGAAGAGGAGCTTGAGCAAACTGCAGTGGCCATTGTCCGATTACACCTTTGATTTCAATCAGTTACTAAATGTTAAGGGAAACACTGCTGTGAGTGCTGTCTACTTGCTATACATGCTTGCTCGGATCTGTTCAATCATAAGGAAATCTGGTAAAGACATTGACGAATTGAAAAAAAAGGGGGAAATTGTGTTGGGTCATGCCGGTGAGCGTAAATTGGCGCTTCACTTATTAAGGTTTCCTGAGACCGTGGAGGAGGCTTGCACGAATCTGTTGCCAAGTGTTTTATGTGAATACTTCTATAATCTATCAGAAAGTTCTATTCCAATTGCCAGGTTATTGGGTCGGCAGAGGAAACGAGCAGACTCTTGCTTTGTGAAGCAACAGGCGTACGTAGTCATGAGGAAATGCTTTCATCTTCTCGGAATTGAAGCAGTGTGCAAGATGTGA

Protein Analysis

423

Amino Acids

47.54

Weight (kDa)

8.8

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1d PF00750 183 - 270 2e-16 tRNA synthetases class I (R), catalytic domain
DALR_1 PF05746 310 - 379 6.5e-13 DALR anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 623
AccB7I CCANNNNNTGG 1 cut(s) 650
AccI GTMKAC 1 cut(s) 924
AccII CGCG 1 cut(s) 490
AciI CCGC 2 cut(s) 197, 488
AclWI GGATC 2 cut(s) 572, 956
AcoI YGGCCR 2 cut(s) 586, 851
AcuI CTGAAG 1 cut(s) 845
AfaI GTAC 2 cut(s) 659, 1214
AfiI CCNNNNNNNGG 1 cut(s) 650
AgsI TTSAA 7 cut(s) 14, 280, 616, 880, 957, 994, 1253
AjnI CCWGG 2 cut(s) 282, 1154
AleI CACNNNNGTG 1 cut(s) 911
AluBI AGCT 6 cut(s) 168, 369, 413, 557, 623, 834
AluI AGCT 6 cut(s) 168, 369, 413, 557, 623, 834
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 2 cut(s) 272, 1061
AlwI GGATC 2 cut(s) 572, 956
AoxI GGCC 2 cut(s) 586, 851
ApeKI GCWGC 6 cut(s) 320, 366, 432, 435, 592, 620
ArsI GACNNNNNNTTYG 2 cut(s) 1178, 1210
AseI ATTAAT 1 cut(s) 375
AspLEI GCGC 1 cut(s) 1045
AsuHPI GGTGA 2 cut(s) 431, 1040
BalI TGGCCA 2 cut(s) 588, 853
BanII GRGCYC 1 cut(s) 170
BbsI GAAGAC 2 cut(s) 233, 822
Bbv12I GWGCWC 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 6 cut(s) 307, 378, 419, 422, 604, 632
BccI CCATC 3 cut(s) 335, 644, 698
BcgI CGANNNNNNTGC 2 cut(s) 1078, 1112
BciT130I CCWGG 2 cut(s) 284, 1156
BcoDI GTCTC 2 cut(s) 272, 1061
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 2 cut(s) 518, 845
BfoI RGCGCY 1 cut(s) 1046
BfuAI ACCTGC 1 cut(s) 623
BisI GCNGC 6 cut(s) 321, 367, 433, 436, 593, 621
BlsI GCNGC 6 cut(s) 322, 368, 434, 437, 594, 622
Bme1390I CCNGG 2 cut(s) 284, 1156
BmrFI CCNGG 2 cut(s) 284, 1156
BmsI GCATC 1 cut(s) 95
BpiI GAAGAC 2 cut(s) 233, 822
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 1 cut(s) 362
BpuEI CTTGAG 2 cut(s) 97, 856
BsaAI YACGTR 1 cut(s) 1216
BsaBI GATNNNNATC 1 cut(s) 879
BsaI GGTCTC 1 cut(s) 1061
BsaJI CCNNGG 2 cut(s) 44, 1071
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse118I RCCGGY 1 cut(s) 1025
Bse1I ACTGG 2 cut(s) 203, 824
Bse3DI GCAATG 3 cut(s) 452, 501, 543
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 2 cut(s) 284, 1156
BseDI CCNNGG 2 cut(s) 44, 1071
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMI GCAATG 3 cut(s) 452, 501, 543
BseMII CTCAG 4 cut(s) 41, 376, 540, 1056
BseNI ACTGG 2 cut(s) 203, 824
BseRI GAGGAG 2 cut(s) 844, 1091
BseXI GCAGC 6 cut(s) 307, 378, 419, 422, 604, 632
Bsh1236I CGCG 1 cut(s) 490
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 2 cut(s) 588, 853
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 1026
BsiWI CGTACG 1 cut(s) 1212
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 650
BsmAI GTCTC 2 cut(s) 272, 1061
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 2 cut(s) 588, 853
Bso31I GGTCTC 1 cut(s) 1061
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 207, 564, 948
BspACI CCGC 2 cut(s) 197, 488
BspANI GGCC 2 cut(s) 588, 853
BspCNI CTCAG 4 cut(s) 40, 375, 541, 1057
BspFNI CGCG 1 cut(s) 490
BspHI TCATGA 1 cut(s) 1221
BspMAI CTGCAG 2 cut(s) 522, 849
BspMI ACCTGC 1 cut(s) 623
BspPI GGATC 2 cut(s) 572, 956
BspQI GCTCTTC 2 cut(s) 175, 733
BspTNI GGTCTC 1 cut(s) 1061
BsrDI GCAATG 3 cut(s) 452, 501, 543
BsrFI RCCGGY 1 cut(s) 1025
BsrI ACTGG 2 cut(s) 203, 824
BssAI RCCGGY 1 cut(s) 1025
BssECI CCNNGG 2 cut(s) 44, 1071
BssMI GATC 3 cut(s) 207, 564, 948
Bst2UI CCWGG 2 cut(s) 284, 1156
Bst4CI ACNGT 4 cut(s) 136, 235, 400, 1072
Bst6I CTCTTC 3 cut(s) 175, 733, 821
BstBAI YACGTR 1 cut(s) 1216
BstC8I GCNNGC 5 cut(s) 325, 590, 630, 942, 1084
BstDEI CTNAG 4 cut(s) 27, 362, 549, 1065
BstDSI CCRYGG 2 cut(s) 44, 1071
BstEII GGTNACC 1 cut(s) 213
BstFNI CGCG 1 cut(s) 490
BstH2I RGCGCY 1 cut(s) 1046
BstHHI GCGC 1 cut(s) 1045
BstKTI GATC 3 cut(s) 210, 567, 951
BstMAI GTCTC 2 cut(s) 272, 1061
BstMBI GATC 3 cut(s) 207, 564, 948
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 5 cut(s) 545, 554, 629, 917, 937
BstNI CCWGG 2 cut(s) 284, 1156
BstNSI RCATGY 1 cut(s) 940
BstPI GGTNACC 1 cut(s) 213
BstSCI CCNGG 2 cut(s) 282, 1154
BstSFI CTRYAG 2 cut(s) 518, 845
BstSNI TACGTA 1 cut(s) 1216
BstUI CGCG 1 cut(s) 490
BstV1I GCAGC 6 cut(s) 307, 378, 419, 422, 604, 632
BstV2I GAAGAC 2 cut(s) 233, 822
BstX2I RGATCY 1 cut(s) 948
BstXI CCANNNNNNTGG 3 cut(s) 210, 469, 1162
BstYI RGATCY 1 cut(s) 948
BsuRI GGCC 2 cut(s) 588, 853
BtgI CCRYGG 2 cut(s) 44, 1071
BtgZI GCGATG 1 cut(s) 363
BtsI GCAGTG 4 cut(s) 315, 854, 906, 1263
BtsIMutI CAGTG 6 cut(s) 210, 315, 396, 854, 906, 1263
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 5 cut(s) 325, 590, 630, 942, 1084
CciI TCATGA 1 cut(s) 1221
CfoI GCGC 1 cut(s) 1045
Cfr10I RCCGGY 1 cut(s) 1025
CseI GACGC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 658, 1213
CviAII CATG 4 cut(s) 674, 937, 1022, 1222
CviQI GTAC 2 cut(s) 658, 1213
DdeI CTNAG 4 cut(s) 27, 362, 549, 1065
DpnI GATC 3 cut(s) 209, 566, 950
DpnII GATC 3 cut(s) 207, 564, 948
DraI TTTAAA 1 cut(s) 180
EaeI YGGCCR 2 cut(s) 586, 851
Eam1104I CTCTTC 3 cut(s) 175, 733, 821
EarI CTCTTC 3 cut(s) 175, 733, 821
Ecl136II GAGCTC 1 cut(s) 168
Eco105I TACGTA 1 cut(s) 1216
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 1061
Eco53kI GAGCTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 845
Eco91I GGTNACC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 282, 1154
EcoT38I GRGCYC 1 cut(s) 170
FaeI CATG 4 cut(s) 677, 940, 1025, 1225
FalI AAGNNNNNCTT 4 cut(s) 256, 288, 818, 850
FaqI GGGAC 1 cut(s) 477
FatI CATG 4 cut(s) 673, 936, 1021, 1221
FauI CCCGC 1 cut(s) 204
FblI GTMKAC 1 cut(s) 924
Fnu4HI GCNGC 6 cut(s) 321, 367, 433, 436, 593, 621
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 6 cut(s) 321, 367, 433, 436, 593, 621
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 1044
GluI GCNGC 6 cut(s) 321, 367, 433, 436, 593, 621
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 1046
HaeIII GGCC 2 cut(s) 588, 853
HapII CCGG 1 cut(s) 1026
HgaI GACGC 1 cut(s) 479
HhaI GCGC 1 cut(s) 1045
Hin1II CATG 4 cut(s) 677, 940, 1025, 1225
Hin6I GCGC 1 cut(s) 1043
HinP1I GCGC 1 cut(s) 1043
HinfI GANTC 6 cut(s) 58, 79, 143, 721, 1090, 1187
HpaII CCGG 1 cut(s) 1026
HphI GGTGA 2 cut(s) 431, 1040
Hpy166II GTNNAC 3 cut(s) 403, 710, 925
Hpy188I TCNGA 5 cut(s) 733, 862, 948, 1135, 1247
Hpy188III TCNNGA 3 cut(s) 122, 1064, 1222
Hpy8I GTNNAC 3 cut(s) 403, 710, 925
HpyAV CCTTC 3 cut(s) 281, 282, 402
HpyCH4III ACNGT 4 cut(s) 136, 235, 400, 1072
HpyCH4IV ACGT 1 cut(s) 1215
HpyCH4V TGCA 9 cut(s) 140, 223, 263, 327, 520, 632, 847, 1086, 1263
HpyF10VI GCNNNNNNNGC 5 cut(s) 545, 554, 629, 917, 937
HpyF3I CTNAG 4 cut(s) 27, 362, 549, 1065
HpySE526I ACGT 1 cut(s) 1215
Hsp92II CATG 4 cut(s) 677, 940, 1025, 1225
HspAI GCGC 1 cut(s) 1043
Kzo9I GATC 3 cut(s) 207, 564, 948
LguI GCTCTTC 2 cut(s) 175, 733
LmnI GCTCC 3 cut(s) 113, 449, 831
Lsp1109I GCAGC 6 cut(s) 307, 378, 419, 422, 604, 632
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 1215
MaeIII GTNAC 5 cut(s) 51, 213, 419, 574, 885
MalI GATC 3 cut(s) 209, 566, 950
MboI GATC 3 cut(s) 207, 564, 948
MboII GAAGA 7 cut(s) 162, 233, 713, 720, 827, 838, 1232
MfeI CAATTG 2 cut(s) 645, 1149
MflI RGATCY 1 cut(s) 948
MhlI GDGCHC 1 cut(s) 170
MlsI TGGCCA 2 cut(s) 588, 853
MluCI AATT 9 cut(s) 70, 463, 645, 759, 989, 1008, 1037, 1149, 1248
MluNI TGGCCA 2 cut(s) 588, 853
MlyI GAGTC 5 cut(s) 52, 88, 137, 715, 1181
MnlI CCTC 9 cut(s) 51, 118, 210, 371, 822, 1069, 1072, 1167, 1218
Mox20I TGGCCA 2 cut(s) 588, 853
MscI TGGCCA 2 cut(s) 588, 853
MseI TTAA 6 cut(s) 69, 179, 375, 758, 897, 1055
MslI CAYNNNNRTG 2 cut(s) 911, 1026
Msp20I TGGCCA 2 cut(s) 588, 853
MspI CCGG 1 cut(s) 1026
MspR9I CCNGG 2 cut(s) 284, 1156
MunI CAATTG 2 cut(s) 645, 1149
MvaI CCWGG 2 cut(s) 284, 1156
MvnI CGCG 1 cut(s) 490
MwoI GCNNNNNNNGC 5 cut(s) 545, 554, 629, 917, 937
NdeII GATC 3 cut(s) 207, 564, 948
NlaIII CATG 4 cut(s) 677, 940, 1025, 1225
NmuCI GTSAC 1 cut(s) 419
NspI RCATGY 1 cut(s) 940
OliI CACNNNNGTG 1 cut(s) 911
PagI TCATGA 1 cut(s) 1221
PciSI GCTCTTC 2 cut(s) 175, 733
PfeI GAWTC 1 cut(s) 1090
Pfl23II CGTACG 1 cut(s) 1212
PflFI GACNNNGTC 2 cut(s) 233, 425
PflMI CCANNNNNTGG 1 cut(s) 650
PkrI GCNGC 6 cut(s) 322, 368, 434, 437, 594, 622
PleI GAGTC 5 cut(s) 52, 87, 137, 715, 1181
PpsI GAGTC 5 cut(s) 52, 87, 137, 715, 1181
Ppu21I YACGTR 1 cut(s) 1216
PshBI ATTAAT 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 282, 1154
PspEI GGTNACC 1 cut(s) 213
PspGI CCWGG 2 cut(s) 282, 1154
PspLI CGTACG 1 cut(s) 1212
PstI CTGCAG 2 cut(s) 522, 849
PsuI RGATCY 1 cut(s) 948
PsyI GACNNNGTC 2 cut(s) 233, 425
RsaI GTAC 2 cut(s) 659, 1214
RsaNI GTAC 2 cut(s) 658, 1213
RseI CAYNNNNRTG 2 cut(s) 911, 1026
SacI GAGCTC 1 cut(s) 170
SapI GCTCTTC 2 cut(s) 175, 733
SaqAI TTAA 6 cut(s) 69, 179, 375, 758, 897, 1055
SatI GCNGC 6 cut(s) 321, 367, 433, 436, 593, 621
Sau3AI GATC 3 cut(s) 207, 564, 948
SchI GAGTC 5 cut(s) 52, 88, 137, 715, 1181
ScrFI CCNGG 2 cut(s) 284, 1156
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 1 cut(s) 95
SfcI CTRYAG 2 cut(s) 518, 845
SmiMI CAYNNNNRTG 2 cut(s) 911, 1026
SmlI CTYRAG 2 cut(s) 76, 835
SmoI CTYRAG 2 cut(s) 76, 835
SnaBI TACGTA 1 cut(s) 1216
Sse9I AATT 9 cut(s) 70, 463, 645, 759, 989, 1008, 1037, 1149, 1248
SsiI CCGC 2 cut(s) 197, 488
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 282, 1154
TaaI ACNGT 4 cut(s) 136, 235, 400, 1072
TaiI ACGT 1 cut(s) 1218
TaqI TCGA 2 cut(s) 745, 798
TaqII GACCGA 1 cut(s) 227
TasI AATT 9 cut(s) 70, 463, 645, 759, 989, 1008, 1037, 1149, 1248
TfiI GAWTC 1 cut(s) 1090
Tru1I TTAA 6 cut(s) 69, 179, 375, 758, 897, 1055
Tru9I TTAA 6 cut(s) 69, 179, 375, 758, 897, 1055
TscAI CASTG 6 cut(s) 210, 315, 403, 854, 913, 1263
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 6 cut(s) 320, 366, 432, 435, 592, 620
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 6 cut(s) 162, 264, 373, 532, 780, 1226
TspGWI ACGGA 3 cut(s) 33, 70, 733
TspRI CASTG 6 cut(s) 210, 315, 403, 854, 913, 1263
Tth111I GACNNNGTC 2 cut(s) 233, 425
Van91I CCANNNNNTGG 1 cut(s) 650
VspI ATTAAT 1 cut(s) 375
XceI RCATGY 1 cut(s) 940
XcmI CCANNNNNNNNNTGG 2 cut(s) 469, 680
XmiI GTMKAC 1 cut(s) 924
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.