Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001792.1

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Forward (+)

128811 .. 129506

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001792.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgtttttcaaggcagctacgcttgcaggttggcttccaattgatggctcgtacccgaaagttagccatgttggttttggtgttgttcttggagaagatggtaaacgattacggactcgctcttctgatgatgtggttcgattgattgatttacttgatgaagccaagagccgaagcaaaacaagtcttgtcgagcgtggtaagagtgaagactggactgaagaggagcttgagcaaactgcagtggccgttagttatggcgctgtgaagtatgctgatctgaagaacaacagattgtccgattacacctttgatttcaatcagttactaaatgttaagggaaacactgctgtgagtgctgtctacttgctatacatgcttgctcggatctgttcaatcataaggaaatctggtaaagacattgacgaattgaaaaaaaagggggaaattgtgttgggtcatgccggtgagcgtaaattggcgcttcacttattaaggtttcctgagaccgtggaggaggcttgcacgaatctgttgccaagtgttttatgtgaatacctctataatctatcagaaagttctattccaattgccaggttactgggtcggcagaggaaacgagcagatcgactcttgctttgtgaagcaacaggcgtacgtagtcatgaggaaatgctttcatcttctcggaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

231

Amino Acids

25.87

Weight (kDa)

8.27

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	240, 302
AfaI	GTAC	2 cut(s)	53, 657
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	10, 319, 396, 433
AjnI	CCWGG	1 cut(s)	593
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	2 cut(s)	17, 229
AluI	AGCT	2 cut(s)	17, 229
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	621, 653
AspLEI	GCGC	2 cut(s)	263, 484
AsuHPI	GGTGA	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	38, 92
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BciT130I	CCWGG	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	2 cut(s)	264, 485
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	595
BmrI	ACTGGG	1 cut(s)	611
BmuI	ACTGGG	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	659
BsaBI	GATNNNNATC	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	2 cut(s)	218, 606
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	510
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	218, 606
BseRI	GAGGAG	2 cut(s)	239, 530
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	465
BsiWI	CGTACG	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	248
Bso31I	GGTCTC	1 cut(s)	500
Bsp143I	GATC	3 cut(s)	277, 387, 625
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	664
BspMAI	CTGCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	2 cut(s)	218, 606
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	3 cut(s)	277, 387, 625
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	2 cut(s)	127, 216
BstBAI	YACGTR	1 cut(s)	659
BstC8I	GCNNGC	3 cut(s)	24, 381, 523
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	510
BstH2I	RGCGCY	2 cut(s)	264, 485
BstHHI	GCGC	2 cut(s)	263, 484
BstKTI	GATC	3 cut(s)	280, 390, 628
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	3 cut(s)	277, 387, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 356, 376
BstNI	CCWGG	1 cut(s)	595
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	593
BstSFI	CTRYAG	1 cut(s)	240
BstSNI	TACGTA	1 cut(s)	659
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	248
BtgI	CCRYGG	1 cut(s)	510
BtsI	GCAGTG	2 cut(s)	249, 345
BtsIMutI	CAGTG	2 cut(s)	249, 345
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	3 cut(s)	24, 381, 523
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	2 cut(s)	263, 484
Cfr10I	RCCGGY	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	52, 656
CviAII	CATG	4 cut(s)	68, 376, 461, 665
CviJI	RGCY	9 cut(s)	17, 34, 48, 66, 164, 171, 229, 248, 521
CviKI_1	RGCY	9 cut(s)	17, 34, 48, 66, 164, 171, 229, 248, 521
CviQI	GTAC	2 cut(s)	52, 656
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	3 cut(s)	279, 389, 627
DpnII	GATC	3 cut(s)	277, 387, 625
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	127, 216
EarI	CTCTTC	2 cut(s)	127, 216
Eco105I	TACGTA	1 cut(s)	659
Eco31I	GGTCTC	1 cut(s)	500
Eco57I	CTGAAG	2 cut(s)	240, 302
EcoRII	CCWGG	1 cut(s)	593
FaeI	CATG	4 cut(s)	71, 379, 464, 668
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FatI	CATG	4 cut(s)	67, 375, 460, 664
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
GlaI	GCGC	2 cut(s)	262, 483
GluI	GCNGC	1 cut(s)	15
HaeII	RGCGCY	2 cut(s)	264, 485
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	465
HhaI	GCGC	2 cut(s)	263, 484
Hin1II	CATG	4 cut(s)	71, 379, 464, 668
Hin6I	GCGC	2 cut(s)	261, 482
HinP1I	GCGC	2 cut(s)	261, 482
HinfI	GANTC	3 cut(s)	115, 529, 630
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	2 cut(s)	104, 364
Hpy188I	TCNGA	6 cut(s)	127, 282, 301, 387, 574, 690
Hpy188III	TCNNGA	2 cut(s)	503, 665
Hpy8I	GTNNAC	2 cut(s)	104, 364
HpyCH4III	ACNGT	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	3 cut(s)	26, 242, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 356, 376
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	4 cut(s)	71, 379, 464, 668
HspAI	GCGC	2 cut(s)	261, 482
Kzo9I	GATC	3 cut(s)	277, 387, 625
LguI	GCTCTTC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	9 cut(s)	12, 199, 396, 478, 516, 580, 587, 607, 636
Lsp1109I	GCAGC	1 cut(s)	26
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	2 cut(s)	324, 597
MalI	GATC	3 cut(s)	279, 389, 627
MboI	GATC	3 cut(s)	277, 387, 625
MboII	GAAGA	6 cut(s)	107, 114, 221, 233, 295, 675
MfeI	CAATTG	2 cut(s)	39, 588
MflI	RGATCY	1 cut(s)	387
MluCI	AATT	6 cut(s)	39, 428, 447, 476, 588, 691
MlyI	GAGTC	2 cut(s)	109, 624
MnlI	CCTC	6 cut(s)	217, 508, 511, 569, 606, 661
MseI	TTAA	2 cut(s)	336, 494
MslI	CAYNNNNRTG	2 cut(s)	350, 465
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	595
MunI	CAATTG	2 cut(s)	39, 588
MvaI	CCWGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	23, 356, 376
NdeII	GATC	3 cut(s)	277, 387, 625
NlaIII	CATG	4 cut(s)	71, 379, 464, 668
NspI	RCATGY	1 cut(s)	379
OliI	CACNNNNGTG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	664
PciSI	GCTCTTC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	529
Pfl23II	CGTACG	1 cut(s)	655
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	2 cut(s)	109, 624
PpsI	GAGTC	2 cut(s)	109, 624
Ppu21I	YACGTR	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspLI	CGTACG	1 cut(s)	655
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	53, 657
RsaNI	GTAC	2 cut(s)	52, 656
RseI	CAYNNNNRTG	2 cut(s)	350, 465
SapI	GCTCTTC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	336, 494
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	277, 387, 625
SchI	GAGTC	2 cut(s)	109, 624
ScrFI	CCNGG	1 cut(s)	595
SetI	ASST	8 cut(s)	19, 31, 231, 311, 500, 561, 599, 661
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	350, 465
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SnaBI	TACGTA	1 cut(s)	659
Sse9I	AATT	6 cut(s)	39, 428, 447, 476, 588, 691
StyD4I	CCNGG	1 cut(s)	593
TaaI	ACNGT	1 cut(s)	511
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	3 cut(s)	139, 192, 628
TasI	AATT	6 cut(s)	39, 428, 447, 476, 588, 691
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	2 cut(s)	336, 494
Tru9I	TTAA	2 cut(s)	336, 494
TscAI	CASTG	2 cut(s)	249, 352
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	174, 669
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	2 cut(s)	249, 352
Van91I	CCANNNNNTGG	1 cut(s)	44
XceI	RCATGY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.