Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001528

Physical Location & Seq

Genomic Coordinates Forward (+)

33358628 .. 33359393

Gene Structure 766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19297

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTTACTGGTAATTATTGAGACATCCCAGAAGGATCACTTGCATAAGATTTTCAAGGCAGCTCAGTGTGCAGGTTGGCTCCCAGCTGATGAAGGCAGGTCATTATATCCAAAAGCTAGCCATGTTGGTTTTGGTCTTGTTTGTGGAGCAGATGCCAAACCCCTCCTGACTCGCTGCGCCAATGTGGTTAGATTAGTTGATTTACTGGATGAAGCGAAGAACCGCAGCAAAGCAGCTCTAATTGAGCGGGTAGAGCTAAAGGCTGTTGGTTATGGTGCTGTTAAGTATGCTGACCTGAAGAATAGTAGATGTAGCAAATACAAGTTCGATTTTGATCAGATGCTAAATGATAAGGGAAACACTGCAGTTTACTTGCTCTATGCTCATGCTCGGATCTGTTCTATAATGAGCAAATCTGGCAGAAACATAGAGGAATTGAAAAGAACAGGAGAAATTGTGCTGGATCATGTTGGGGAACGGCAATTGGCGCTTCATTTGCTAAATTTTTCTGAGGCTGTGGAGGAGAGCTGCACCACTCTATTGCCGAATGTTTTGACTGACTACCTCTACAGTTTATCAGAAATCTTCACTAAGTTCTATGAAGACTGCAAGGTTGTTGGGAGTTCACAGGAAACAAGTAGACTGTTGCTTTGTGAAGCAACAGCCTTAGTGATGAGGAAATCATGTTTTAATCTGCTCGGAATCGAACCTGTTAACAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

241

Amino Acids

26.88

Weight (kDa)

8.02

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_1d	PF00750	1 - 111	4.3e-19	tRNA synthetases class I (R), catalytic domain
DALR_1	PF05746	125 - 241	2e-29	DALR anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66530 AT4G26300 AT4G26300 AT4G26300 AT4G26300 AT4G26300
fragaria_vesca	FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400 FvH4_1g06400
malus_domestica	MD02G1067300.v1.1 MD15G1198200.v1.1 MD15G1199100.v1.1
prunus_persica	Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1 Prupe.7G218100_v2.0.a1
pyrus_communis	pycom02g05330 pycom15g17660
rosa_chinensis	RchiOBHm_Chr2g0092141 RchiOBHm_Chr3g0454631 RchiOBHm_Chr3g0454641 RchiOBHm_Chr7g0215671
rosa_laevigata	RLG00000016278 RLG00000025428
rosa_multiflora	Rmu_co8501171.1_g000001 Rmu_sc0000898.1_g000026 Rmu_sc0001792.1_g000032 Rmu_sc0001792.1_g000033 Rmu_sc0013552.1_g000004
rosa_roxburghii	Rroxscaffold_2G00149440 Rroxscaffold_3G00243930
rosa_rugosa	Rorug02G0023000 Rorug02G0023100 Rorug02G0023200 Rorug03G0000700 Rorug03G0000800 Rorug07G0156100
rosa_samantha	Rh2AG068800 Rh2BG068100 Rh2CG069300 Rh2DG067400 Rh3DG062300 Rh7AG292900 Rh7BG285300 Rh7CG313000 Rh7DG296400
rosa_wichuraiana	Rw2G006350 Rw7G024930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	62, 87
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	640
AciI	CCGC	2 cut(s)	223, 247
AclWI	GGATC	3 cut(s)	42, 401, 471
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	55, 439
AluBI	AGCT	7 cut(s)	62, 86, 116, 236, 256, 528, 721
AluI	AGCT	7 cut(s)	62, 86, 116, 236, 256, 528, 721
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	42, 401, 471
ApeKI	GCWGC	5 cut(s)	59, 174, 225, 233, 528
ApoI	RAATTY	1 cut(s)	502
ArsI	GACNNNNNNTTYG	2 cut(s)	633, 665
AspLEI	GCGC	2 cut(s)	179, 490
AsuNHI	GCTAGC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	609
BbvI	GCAGC	5 cut(s)	71, 161, 237, 245, 515
BceAI	ACGGC	1 cut(s)	494
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	2 cut(s)	363, 568
BfoI	RGCGCY	1 cut(s)	491
BfuAI	ACCTGC	2 cut(s)	62, 87
BisI	GCNGC	5 cut(s)	60, 175, 226, 234, 529
BlsI	GCNGC	5 cut(s)	61, 176, 227, 235, 530
BmiI	GGNNCC	1 cut(s)	80
BmsI	GCATC	2 cut(s)	142, 330
BmtI	GCTAGC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bse1I	ACTGG	2 cut(s)	12, 210
Bse8I	GATNNNNATC	1 cut(s)	333
BseGI	GGATG	2 cut(s)	23, 214
BseJI	GATNNNNATC	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	77, 501
BseNI	ACTGG	2 cut(s)	12, 210
BseRI	GAGGAG	1 cut(s)	536
BseXI	GCAGC	5 cut(s)	71, 161, 237, 245, 515
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	2 cut(s)	90, 514
BsmAI	GTCTC	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	34, 334, 393, 463
BspACI	CCGC	2 cut(s)	223, 247
BspCNI	CTCAG	2 cut(s)	76, 502
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	2 cut(s)	62, 87
BspOI	GCTAGC	1 cut(s)	120
BspPI	GGATC	3 cut(s)	42, 401, 471
BsrBI	CCGCTC	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	12, 210
BssMI	GATC	4 cut(s)	34, 334, 393, 463
Bst4CI	ACNGT	2 cut(s)	572, 645
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	4 cut(s)	63, 510, 591, 667
BstF5I	GGATG	2 cut(s)	23, 214
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	2 cut(s)	179, 490
BstKTI	GATC	4 cut(s)	37, 337, 396, 466
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	4 cut(s)	34, 334, 393, 463
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 253, 417, 487, 496
BstSFI	CTRYAG	2 cut(s)	363, 568
BstV1I	GCAGC	5 cut(s)	71, 161, 237, 245, 515
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	23, 214
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	71, 360
BveI	ACCTGC	2 cut(s)	62, 87
Cac8I	GCNNGC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	179, 490
CviAII	CATG	4 cut(s)	122, 386, 467, 684
DdeI	CTNAG	4 cut(s)	63, 510, 591, 667
DpnI	GATC	4 cut(s)	36, 336, 395, 465
DpnII	GATC	4 cut(s)	34, 334, 393, 463
Eco57I	CTGAAG	1 cut(s)	317
FaeI	CATG	4 cut(s)	125, 389, 470, 687
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	4 cut(s)	121, 385, 466, 683
FauI	CCCGC	1 cut(s)	240
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	5 cut(s)	60, 175, 226, 234, 529
FokI	GGATG	2 cut(s)	10, 221
Fsp4HI	GCNGC	5 cut(s)	60, 175, 226, 234, 529
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	178, 489
GluI	GCNGC	5 cut(s)	60, 175, 226, 234, 529
GsaI	CCCAGC	1 cut(s)	86
HaeII	RGCGCY	1 cut(s)	491
HhaI	GCGC	2 cut(s)	179, 490
Hin1II	CATG	4 cut(s)	125, 389, 470, 687
Hin6I	GCGC	2 cut(s)	177, 488
HinP1I	GCGC	2 cut(s)	177, 488
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	2 cut(s)	169, 702
HpaI	GTTAAC	1 cut(s)	715
Hpy166II	GTNNAC	4 cut(s)	370, 626, 641, 715
Hpy188I	TCNGA	5 cut(s)	339, 393, 511, 580, 701
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	4 cut(s)	370, 626, 641, 715
HpyAV	CCTTC	2 cut(s)	25, 86
HpyCH4III	ACNGT	2 cut(s)	572, 645
HpyCH4V	TGCA	5 cut(s)	43, 71, 365, 531, 609
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 253, 417, 487, 496
HpyF3I	CTNAG	4 cut(s)	63, 510, 591, 667
Hsp92II	CATG	4 cut(s)	125, 389, 470, 687
HspAI	GCGC	2 cut(s)	177, 488
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	34, 334, 393, 463
LmnI	GCTCC	2 cut(s)	84, 146
Lsp1109I	GCAGC	5 cut(s)	71, 161, 237, 245, 515
LweI	GCATC	2 cut(s)	142, 330
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	4 cut(s)	36, 336, 395, 465
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	4 cut(s)	34, 334, 393, 463
MboII	GAAGA	4 cut(s)	229, 310, 577, 614
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	1 cut(s)	393
MluCI	AATT	6 cut(s)	12, 240, 434, 453, 482, 502
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	6 cut(s)	173, 424, 505, 514, 575, 669
MseI	TTAA	3 cut(s)	282, 690, 714
MspA1I	CMGCKG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	482
MwoI	GCNNNNNNNGC	5 cut(s)	68, 253, 417, 487, 496
NdeII	GATC	4 cut(s)	34, 334, 393, 463
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	4 cut(s)	125, 389, 470, 687
NlaIV	GGNNCC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	702
PkrI	GCNGC	5 cut(s)	61, 176, 227, 235, 530
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	80
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	282, 690, 714
SatI	GCNGC	5 cut(s)	60, 175, 226, 234, 529
Sau3AI	GATC	4 cut(s)	34, 334, 393, 463
SchI	GAGTC	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	142, 330
SfcI	CTRYAG	2 cut(s)	363, 568
Sse9I	AATT	6 cut(s)	12, 240, 434, 453, 482, 502
SsiI	CCGC	2 cut(s)	223, 247
SspMI	CTAG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	572, 645
TaqI	TCGA	2 cut(s)	327, 705
TasI	AATT	6 cut(s)	12, 240, 434, 453, 482, 502
TfiI	GAWTC	1 cut(s)	702
Tru1I	TTAA	3 cut(s)	282, 690, 714
Tru9I	TTAA	3 cut(s)	282, 690, 714
TscAI	CASTG	2 cut(s)	71, 367
TseI	GCWGC	5 cut(s)	59, 174, 225, 233, 528
TspDTI	ATGAA	4 cut(s)	105, 225, 482, 615
TspRI	CASTG	2 cut(s)	71, 367
XapI	RAATTY	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.