Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000418

Physical Location & Seq

Genomic Coordinates Forward (+)

121192 .. 127037

Gene Structure 5846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCATCGTCGTCGTCAAATTCGCCGTGTGCAGCCTGTAAGTTTCTGCGTCGCAAGTGCCAGCCAGAGTGCGTATTTGCTCCGTACTTCCCACCGGACCAGCCCCAGAAGTTTGCAAATGTTCACAAAGTTTTTGGGGCGAGCAACGTGACCAAGCTGCTTAACGAGTTGCACCCCCACCAGCGTGAGGACGCCGTCAATTCTCTTGCCTACGAGGCTGACATGCGCCTCCGTGATCCAGTCTACGGTTGCGTCGGAGTCATCTCTCTTCTCCAACACCAACTCCGCCAGCTTCAGATGGATCTAACCTGCGCCAAATCTGAACTCTCGAAATACCAAAACCTCCAGGGAATCACTAGCCACGGACTTATAGCTGCTGCCGCCGCAGCAGCCGCCAGCCACCACAGTAACAACATTCTTAATAATCAATATAACTTTTTGTCCTCGTCCCGGGAGAGGGAGAGAGACATCAATCTCATCTCTAGTACCACCACTGGCATTGGCATTGGCACCGGAGGGGGAGGAGGAGGCCGCGGATCAGCAGACCAATATAATAGTATATCACACCACCAGTTCTTCCCCAGAGATCAGCAACAACAACAGATGATCAGGACATTTGATCAGGCGGCTGCGGGAAACATTAACTATGATGCAAGCAGCCTTTTGGCCATGAACGTCTCAGCCGGCATTCCATTTCAGCAACCTAGGGCTGCTGCTGGGGATGACCGCCGAACCATTGATCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004814 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Arg_tRNA_synt_N DALR_1 tRNA-synt_1d

Protein Analysis

249

Amino Acids

27.08

Weight (kDa)

8.23

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	9 - 106	5.9e-43	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000418)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis	RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata	RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora	Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa	Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha	Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana	Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	509
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	534
AciI	CCGC	9 cut(s)	286, 381, 384, 393, 532, 534, 626, 632, 727
AclWI	GGATC	4 cut(s)	230, 309, 544, 734
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	86, 487
AfiI	CCNNNNNNNGG	5 cut(s)	187, 245, 450, 456, 457
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	183
AloI	GAACNNNNNNTCC	1 cut(s)	724
AluBI	AGCT	3 cut(s)	157, 292, 374
AluI	AGCT	3 cut(s)	157, 292, 374
Alw26I	GTCTC	2 cut(s)	459, 682
AlwI	GGATC	4 cut(s)	230, 309, 544, 734
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	2 cut(s)	529, 666
ApoI	RAATTY	1 cut(s)	19
AspA2I	CCTAGG	1 cut(s)	704
AspLEI	GCGC	2 cut(s)	228, 314
AspS9I	GGNCC	1 cut(s)	97
AsuC2I	CCSGG	2 cut(s)	451, 452
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	97
AvrII	CCTAGG	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	509
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	2 cut(s)	10, 179
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	2 cut(s)	606, 619
BcnI	CCSGG	2 cut(s)	451, 452
BcoDI	GTCTC	2 cut(s)	459, 682
BfaI	CTAG	3 cut(s)	357, 483, 705
BfuAI	ACCTGC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	215
BlnI	CCTAGG	1 cut(s)	704
Bme1390I	CCNGG	3 cut(s)	347, 451, 452
Bme18I	GGWCC	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	3 cut(s)	347, 451, 452
BmsI	GCATC	2 cut(s)	14, 640
BpmI	CTGGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	451, 452
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	5 cut(s)	346, 361, 450, 532, 704
BsaWI	WCCGGW	2 cut(s)	94, 512
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	5 cut(s)	187, 245, 450, 456, 457
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	3 cut(s)	239, 499, 571
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	5 cut(s)	346, 361, 450, 532, 704
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	5 cut(s)	187, 245, 450, 456, 457
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	3 cut(s)	239, 499, 571
BseRI	GAGGAG	2 cut(s)	537, 540
BseYI	CCCAGC	1 cut(s)	716
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	2 cut(s)	531, 668
BshNI	GGYRCC	1 cut(s)	509
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	4 cut(s)	95, 451, 513, 684
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	5 cut(s)	187, 245, 450, 456, 457
BsmAI	GTCTC	2 cut(s)	459, 682
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	2 cut(s)	531, 668
BsoBI	CYCGRG	1 cut(s)	450
Bsp143I	GATC	7 cut(s)	235, 301, 536, 586, 606, 619, 739
BspACI	CCGC	9 cut(s)	286, 381, 384, 393, 532, 534, 626, 632, 727
BspANI	GGCC	2 cut(s)	531, 668
BspCNI	CTCAG	1 cut(s)	692
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	511
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	4 cut(s)	230, 309, 544, 734
BspT107I	GGYRCC	1 cut(s)	509
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	3 cut(s)	239, 499, 571
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	5 cut(s)	346, 361, 450, 532, 704
BssMI	GATC	7 cut(s)	235, 301, 536, 586, 606, 619, 739
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	704
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	248, 407
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	6 cut(s)	62, 142, 290, 397, 655, 685
BstDEI	CTNAG	2 cut(s)	679, 747
BstDSI	CCRYGG	2 cut(s)	361, 532
BstF5I	GGATG	1 cut(s)	727
BstFNI	CGCG	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	228, 314
BstKTI	GATC	7 cut(s)	238, 304, 539, 589, 609, 622, 742
BstMAI	GTCTC	2 cut(s)	459, 682
BstMBI	GATC	7 cut(s)	235, 301, 536, 586, 606, 619, 739
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	3 cut(s)	345, 449, 450
BstUI	CGCG	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	531, 668
BtgI	CCRYGG	2 cut(s)	361, 532
BtsCI	GGATG	1 cut(s)	727
BtsIMutI	CAGTG	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	6 cut(s)	62, 142, 290, 397, 655, 685
CfoI	GCGC	2 cut(s)	228, 314
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	1 cut(s)	97
Cfr42I	CCGCGG	1 cut(s)	535
Cfr9I	CCCGGG	1 cut(s)	450
CseI	GACGC	3 cut(s)	38, 200, 241
Csp6I	GTAC	2 cut(s)	85, 486
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	2 cut(s)	223, 670
CviQI	GTAC	2 cut(s)	85, 486
DdeI	CTNAG	2 cut(s)	679, 747
DpnI	GATC	7 cut(s)	237, 303, 538, 588, 608, 621, 741
DpnII	GATC	7 cut(s)	235, 301, 536, 586, 606, 619, 739
EaeI	YGGCCR	1 cut(s)	666
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	450
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	704
ErhI	CCWWGG	1 cut(s)	704
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	2 cut(s)	226, 673
FaiI	YATR	7 cut(s)	224, 371, 432, 552, 560, 648, 671
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	222, 669
FauI	CCCGC	1 cut(s)	625
FbaI	TGATCA	2 cut(s)	606, 619
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	734
FspBI	CTAG	3 cut(s)	357, 483, 705
GlaI	GCGC	2 cut(s)	227, 313
GsaI	CCCAGC	1 cut(s)	720
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	2 cut(s)	531, 668
HapII	CCGG	4 cut(s)	95, 451, 513, 684
HgaI	GACGC	3 cut(s)	38, 200, 241
HhaI	GCGC	2 cut(s)	228, 314
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	226, 673
Hin6I	GCGC	2 cut(s)	226, 312
HinP1I	GCGC	2 cut(s)	226, 312
HinfI	GANTC	2 cut(s)	258, 351
HpaII	CCGG	4 cut(s)	95, 451, 513, 684
Hpy166II	GTNNAC	2 cut(s)	124, 244
Hpy188I	TCNGA	3 cut(s)	257, 297, 322
Hpy188III	TCNNGA	2 cut(s)	328, 610
Hpy8I	GTNNAC	2 cut(s)	124, 244
Hpy99I	CGWCG	4 cut(s)	13, 16, 54, 257
HpyCH4III	ACNGT	2 cut(s)	248, 407
HpyCH4IV	ACGT	2 cut(s)	147, 675
HpyCH4V	TGCA	4 cut(s)	32, 116, 172, 653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
HpyF3I	CTNAG	2 cut(s)	679, 747
HpySE526I	ACGT	2 cut(s)	147, 675
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	226, 673
HspAI	GCGC	2 cut(s)	226, 312
KroI	GCCGGC	1 cut(s)	683
KroNI	GCCGGC	1 cut(s)	685
Ksp22I	TGATCA	2 cut(s)	606, 619
KspI	CCGCGG	1 cut(s)	535
Kzo9I	GATC	7 cut(s)	235, 301, 536, 586, 606, 619, 739
LmnI	GCTCC	1 cut(s)	85
LweI	GCATC	2 cut(s)	14, 640
MaeI	CTAG	3 cut(s)	357, 483, 705
MaeII	ACGT	2 cut(s)	147, 675
MaeIII	GTNAC	2 cut(s)	148, 407
MalI	GATC	7 cut(s)	237, 303, 538, 588, 608, 621, 741
MboI	GATC	7 cut(s)	235, 301, 536, 586, 606, 619, 739
MboII	GAAGA	2 cut(s)	260, 568
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	668
MluCI	AATT	2 cut(s)	19, 199
MluNI	TGGCCA	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	2 cut(s)	235, 298
Mox20I	TGGCCA	1 cut(s)	668
MroNI	GCCGGC	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	668
MseI	TTAA	3 cut(s)	162, 420, 642
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	668
MspA1I	CMGCKG	1 cut(s)	534
MspI	CCGG	4 cut(s)	95, 451, 513, 684
MspR9I	CCNGG	3 cut(s)	347, 451, 452
Mva1269I	GAATGC	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	6 cut(s)	215, 380, 383, 386, 389, 392
NaeI	GCCGGC	1 cut(s)	685
NciI	CCSGG	2 cut(s)	451, 452
NdeII	GATC	7 cut(s)	235, 301, 536, 586, 606, 619, 739
NgoMIV	GCCGGC	1 cut(s)	683
NlaIII	CATG	2 cut(s)	226, 673
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	226
OliI	CACNNNNGTG	1 cut(s)	183
PctI	GAATGC	1 cut(s)	687
PdiI	GCCGGC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	351
PflFI	GACNNNGTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	86, 487
RsaNI	GTAC	2 cut(s)	85, 486
RseI	CAYNNNNRTG	1 cut(s)	183
SacII	CCGCGG	1 cut(s)	535
SaqAI	TTAA	3 cut(s)	162, 420, 642
Sau3AI	GATC	7 cut(s)	235, 301, 536, 586, 606, 619, 739
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	347, 451, 452
SetI	ASST	8 cut(s)	150, 159, 294, 311, 345, 376, 678, 706
SfaNI	GCATC	2 cut(s)	14, 640
Sfr303I	CCGCGG	1 cut(s)	535
SgrBI	CCGCGG	1 cut(s)	535
SinI	GGWCC	1 cut(s)	97
SmaI	CCCGGG	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	2 cut(s)	19, 199
SsiI	CCGC	9 cut(s)	286, 381, 384, 393, 532, 534, 626, 632, 727
SspMI	CTAG	3 cut(s)	357, 483, 705
StyD4I	CCNGG	3 cut(s)	345, 449, 450
StyI	CCWWGG	1 cut(s)	704
TaaI	ACNGT	2 cut(s)	248, 407
TaiI	ACGT	2 cut(s)	150, 678
TaqI	TCGA	1 cut(s)	329
TasI	AATT	2 cut(s)	19, 199
TauI	GCSGC	5 cut(s)	383, 386, 395, 534, 629
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	3 cut(s)	162, 420, 642
Tru9I	TTAA	3 cut(s)	162, 420, 642
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	686
TspGWI	ACGGA	3 cut(s)	72, 221, 378
TspMI	CCCGGG	1 cut(s)	450
TspRI	CASTG	1 cut(s)	499
Tth111I	GACNNNGTC	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	226
XmaI	CCCGGG	1 cut(s)	450
XmaJI	CCTAGG	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	3 cut(s)	357, 483, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.