Rh6BG147300
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000418
Physical Location & Seq
Reverse (-)
23710819 .. 23711742
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG147300.1

Sequence Viewer

Length: 924 bp
ATGGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATTCGGAGTTTTACGGCCAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAATTGAACCCCAATAGCAAGCGGTTTGATCGAAAAGTAGGCTCGGGAACGTGGAGCGGGCAGTTTTCTAGAGAGGTTGTGGCCGAGGATAGAGACACCGGATGTCGTATTACTGGGATGAGGAGGGAATTTAGGTACGAGGGTGGCTGTGATCCTGAACAAAACAACTCTTGGTTGATGCAAGAGTACGAGTTGTGTGCCACTGATGTCTTGGTGTTGTGCACCTTGAAGAAGAACCCAAGAAAAGCACGATCATCAACATCAACAGCTACTACTAGTAGTTCTCAGACCAATGGTAAGAAGAGGAAGAGGATTGTTGATAATCAACTGAGAAAAACCAAGGCAGTGAGATCGGAAAAGGCTGAGACTTGTGAGGAACAACAATCCACCATCTGTGTCGATCTTACAGATCTGGAAGAGACCAATTCCGAGAGTCGAGATCATCAGCTGCTGCAAGTTGTTGATGAAGATTATCATCCTGAGCTCTATCTTGAGTTACATCCCGATCTCGTTCAAAGCAATGAGCATCTGTTTTTTATGGAGGAACTTTTTGCACCAAGTCCTCTAAATGTTCAGGATCCTCTTCCACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCATGAGTTTCCTATCCACTGAATTTCAACAACAGTTAGGCGAAGACAACAACTTCAGCTTTGTATCCAGTGATCAATTCTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

307

Amino Acids

35.5

Weight (kDa)

4.66

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 111 5e-13 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 195
AciI CCGC 2 cut(s) 160, 195
AclWI GGATC 5 cut(s) 284, 710, 723, 765, 801
AcoI YGGCCR 2 cut(s) 52, 219
AcsI RAATTY 2 cut(s) 266, 839
AcuI CTGAAG 1 cut(s) 856
AfaI GTAC 2 cut(s) 275, 326
AgsI TTSAA 4 cut(s) 145, 367, 653, 845
AhlI ACTAGT 1 cut(s) 413
AjnI CCWGG 1 cut(s) 62
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 5 cut(s) 407, 586, 622, 816, 876
AluI AGCT 5 cut(s) 407, 586, 622, 816, 876
Alw21I GWGCWC 2 cut(s) 362, 624
Alw26I GTCTC 5 cut(s) 225, 497, 551, 750, 756
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 5 cut(s) 284, 710, 723, 765, 801
AlwNI CAGNNNCTG 1 cut(s) 589
Ama87I CYCGRG 1 cut(s) 181
AoxI GGCC 2 cut(s) 52, 219
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 586, 589
ApoI RAATTY 2 cut(s) 266, 839
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 362
BaeI ACNNNNGTAYC 2 cut(s) 265, 298
BamHI GGATCC 1 cut(s) 715
BanII GRGCYC 1 cut(s) 624
BbsI GAAGAC 2 cut(s) 813, 867
Bbv12I GWGCWC 2 cut(s) 362, 624
BbvI GCAGC 2 cut(s) 573, 576
BccI CCATC 2 cut(s) 98, 536
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 4 cut(s) 317, 351, 471, 505
BciT130I CCWGG 1 cut(s) 64
BciVI GTATCC 1 cut(s) 892
BclI TGATCA 2 cut(s) 781, 889
BcoDI GTCTC 5 cut(s) 225, 497, 551, 750, 756
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 2 cut(s) 207, 414
BfuI GTATCC 1 cut(s) 892
BglII AGATCT 2 cut(s) 27, 547
BisI GCNGC 2 cut(s) 587, 590
BlsI GCNGC 2 cut(s) 588, 591
Bme1390I CCNGG 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 91, 717
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 306, 673
BmuI ACTGGG 1 cut(s) 261
BpiI GAAGAC 2 cut(s) 813, 867
BplI GAGNNNNNCTC 2 cut(s) 99, 131
Bpu10I CCTNAGC 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 650
BsaBI GATNNNNATC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 62, 63, 222, 477
BsaWI WCCGGW 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 256, 885
Bse3DI GCAATG 1 cut(s) 664
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 4 cut(s) 62, 63, 222, 477
BseGI GGATG 5 cut(s) 106, 245, 261, 613, 637
BseJI GATNNNNATC 1 cut(s) 612
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 6 cut(s) 437, 458, 492, 609, 761, 767
BseNI ACTGG 2 cut(s) 256, 885
BseRI GAGGAG 1 cut(s) 274
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 2 cut(s) 573, 576
BshFI GGCC 2 cut(s) 54, 221
BsiHKAI GWGCWC 2 cut(s) 362, 624
BsiHKCI CYCGRG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 5 cut(s) 225, 497, 551, 750, 756
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 2 cut(s) 54, 221
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 181
Bsp1286I GDGCHC 2 cut(s) 362, 624
BspACI CCGC 2 cut(s) 160, 195
BspANI GGCC 2 cut(s) 54, 221
BspCNI CTCAG 6 cut(s) 436, 459, 493, 610, 760, 766
BspHI TCATGA 1 cut(s) 819
BspLI GGNNCC 2 cut(s) 91, 717
BspPI GGATC 5 cut(s) 284, 710, 723, 765, 801
BspTNI GGTCTC 1 cut(s) 551
BsrBI CCGCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 2 cut(s) 256, 885
BssECI CCNNGG 4 cut(s) 62, 63, 222, 477
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 86, 852
Bst6I CTCTTC 4 cut(s) 434, 440, 549, 726
BstC8I GCNNGC 2 cut(s) 158, 197
BstDEI CTNAG 6 cut(s) 423, 467, 501, 618, 747, 753
BstF5I GGATG 5 cut(s) 106, 245, 261, 613, 637
BstMAI GTCTC 5 cut(s) 225, 497, 551, 750, 756
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 2 cut(s) 573, 576
BstV2I GAAGAC 2 cut(s) 813, 867
BstX2I RGATCY 3 cut(s) 27, 547, 715
BstYI RGATCY 3 cut(s) 27, 547, 715
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 2 cut(s) 54, 221
BtsCI GGATG 5 cut(s) 106, 245, 261, 613, 637
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 4 cut(s) 339, 489, 834, 892
Cac8I GCNNGC 2 cut(s) 158, 197
CaiI CAGNNNCTG 1 cut(s) 589
CciI TCATGA 1 cut(s) 819
Csp6I GTAC 2 cut(s) 274, 325
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 2 cut(s) 820, 918
CviQI GTAC 2 cut(s) 274, 325
DdeI CTNAG 6 cut(s) 423, 467, 501, 618, 747, 753
EaeI YGGCCR 2 cut(s) 52, 219
Eam1104I CTCTTC 4 cut(s) 434, 440, 549, 726
EarI CTCTTC 4 cut(s) 434, 440, 549, 726
Ecl136II GAGCTC 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 551
Eco53kI GAGCTC 1 cut(s) 622
Eco57I CTGAAG 1 cut(s) 856
Eco88I CYCGRG 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 2 cut(s) 823, 921
FaiI YATR 7 cut(s) 677, 766, 768, 802, 804, 821, 919
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 819, 917
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 2 cut(s) 766, 802
FbaI TGATCA 2 cut(s) 781, 889
Fnu4HI GCNGC 2 cut(s) 587, 590
FokI GGATG 5 cut(s) 113, 252, 268, 600, 624
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 2 cut(s) 587, 590
FspBI CTAG 2 cut(s) 207, 414
GluI GCNGC 2 cut(s) 587, 590
HaeIII GGCC 2 cut(s) 54, 221
HapII CCGG 1 cut(s) 237
Hin1II CATG 2 cut(s) 823, 921
HinfI GANTC 3 cut(s) 571, 734, 743
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 5 cut(s) 34, 43, 426, 493, 568
Hpy8I GTNNAC 1 cut(s) 360
HpyCH4III ACNGT 2 cut(s) 86, 852
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 5 cut(s) 319, 360, 592, 692, 906
HpyF3I CTNAG 6 cut(s) 423, 467, 501, 618, 747, 753
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 2 cut(s) 823, 921
Ksp22I TGATCA 2 cut(s) 781, 889
LmnI GCTCC 1 cut(s) 192
Lsp1109I GCAGC 2 cut(s) 573, 576
LweI GCATC 2 cut(s) 306, 673
MaeI CTAG 2 cut(s) 207, 414
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 633
MbiI CCGCTC 1 cut(s) 195
MflI RGATCY 3 cut(s) 27, 547, 715
MhlI GDGCHC 2 cut(s) 362, 624
MluCI AATT 6 cut(s) 140, 266, 562, 785, 839, 893
MlyI GAGTC 3 cut(s) 580, 743, 752
MseI TTAA 1 cut(s) 914
MslI CAYNNNNRTG 2 cut(s) 21, 801
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
NdeI CATATG 2 cut(s) 766, 802
NlaIII CATG 2 cut(s) 823, 921
NlaIV GGNNCC 2 cut(s) 91, 717
NmeAIII GCCGAG 1 cut(s) 247
PagI TCATGA 1 cut(s) 819
PasI CCCWGGG 1 cut(s) 63
PkrI GCNGC 2 cut(s) 588, 591
PleI GAGTC 3 cut(s) 579, 742, 751
PpsI GAGTC 3 cut(s) 579, 742, 751
Psp124BI GAGCTC 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 91, 717
PstNI CAGNNNCTG 1 cut(s) 589
PsuI RGATCY 3 cut(s) 27, 547, 715
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 2 cut(s) 275, 326
RsaNI GTAC 2 cut(s) 274, 325
RseI CAYNNNNRTG 2 cut(s) 21, 801
SacI GAGCTC 1 cut(s) 624
SaqAI TTAA 1 cut(s) 914
SatI GCNGC 2 cut(s) 587, 590
SchI GAGTC 3 cut(s) 580, 743, 752
ScrFI CCNGG 1 cut(s) 64
SduI GDGCHC 2 cut(s) 362, 624
SetI ASST 9 cut(s) 191, 216, 275, 365, 409, 588, 624, 818, 878
SfaNI GCATC 2 cut(s) 306, 673
SmiMI CAYNNNNRTG 2 cut(s) 21, 801
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 6 cut(s) 140, 266, 562, 785, 839, 893
SsiI CCGC 2 cut(s) 160, 195
SspMI CTAG 2 cut(s) 207, 414
SstI GAGCTC 1 cut(s) 624
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 2 cut(s) 86, 852
TaiI ACGT 1 cut(s) 191
TaqI TCGA 5 cut(s) 20, 169, 537, 574, 737
TasI AATT 6 cut(s) 140, 266, 562, 785, 839, 893
Tru1I TTAA 1 cut(s) 914
Tru9I TTAA 1 cut(s) 914
TscAI CASTG 4 cut(s) 346, 489, 841, 892
TseI GCWGC 2 cut(s) 586, 589
TspDTI ATGAA 4 cut(s) 618, 789, 808, 819
TspRI CASTG 4 cut(s) 346, 489, 841, 892
VneI GTGCAC 1 cut(s) 358
XapI RAATTY 2 cut(s) 266, 839
XbaI TCTAGA 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XspI CTAG 2 cut(s) 207, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.