RchiOBHm_Chr6g0266821

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000418
Physical Location & Seq
Forward (+)
23280620 .. 23280925
306 bp
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UTR
Exon/CDS
Intron
PRQ23930

Sequence Viewer

Length: 306 bp
ATGGGTTGTCCGATCGGGTTCAGGTTTCATCCCATAGATGAAGAACTTGTGGGTTACTTTCTCCAGCAAAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGGTCTCCGATTATTCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTTGGGACAAGAACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAATGGCAAGCGGTTTGATCGCAAAGTAGGCTCGGGAACTTGGAGCGGGCAGTTTTCGAGAGAGGTTGTGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

101

Amino Acids

11.69

Weight (kDa)

6.09

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 98 8.3e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 2 cut(s) 241, 276
AcoI YGGCCR 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 2 cut(s) 74, 143
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
Alw26I GTCTC 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 2 cut(s) 72, 130
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 262
BccI CCATC 2 cut(s) 73, 179
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 76, 145
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 304
Bme1390I CCNGG 2 cut(s) 76, 145
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 2 cut(s) 76, 145
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 143, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 70
BseBI CCWGG 2 cut(s) 76, 145
BseDI CCNNGG 2 cut(s) 143, 144
BseGI GGATG 3 cut(s) 28, 84, 187
BseLI CCNNNNNNNGG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 74, 132
BsiEI CGRYCG 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 2 cut(s) 74, 132
Bso31I GGTCTC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 262
Bsp143I GATC 2 cut(s) 12, 247
BspACI CCGC 2 cut(s) 241, 276
BspANI GGCC 2 cut(s) 74, 132
BspLI GGNNCC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 143, 144
BssMI GATC 2 cut(s) 12, 247
Bst2UI CCWGG 2 cut(s) 76, 145
Bst4CI ACNGT 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 239, 278
BstF5I GGATG 3 cut(s) 28, 84, 187
BstKTI GATC 2 cut(s) 15, 250
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 12, 247
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 2 cut(s) 76, 145
BstSCI CCNGG 2 cut(s) 74, 143
BsuRI GGCC 2 cut(s) 74, 132
BtsCI GGATG 3 cut(s) 28, 84, 187
Cac8I GCNNGC 2 cut(s) 239, 278
Cfr13I GGNCC 1 cut(s) 72
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviJI RGCY 4 cut(s) 74, 132, 193, 261
CviKI_1 RGCY 4 cut(s) 74, 132, 193, 261
DpnI GATC 2 cut(s) 14, 249
DpnII GATC 2 cut(s) 12, 247
EaeI YGGCCR 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 74, 143
FaiI YATR 1 cut(s) 35
FaqI GGGAC 1 cut(s) 170
FauI CCCGC 1 cut(s) 269
FokI GGATG 3 cut(s) 15, 91, 194
FspBI CTAG 1 cut(s) 304
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 74, 132
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 12, 112, 121
Hpy188III TCNNGA 2 cut(s) 264, 288
HpyCH4III ACNGT 1 cut(s) 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
Kzo9I GATC 2 cut(s) 12, 247
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 7 cut(s) 7, 61, 77, 88, 130, 157, 187
MaeI CTAG 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 14, 249
MbiI CCGCTC 1 cut(s) 276
MboI GATC 2 cut(s) 12, 247
MboII GAAGA 3 cut(s) 53, 149, 196
MnlI CCTC 3 cut(s) 97, 204, 286
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 76, 145
MvaI CCWGG 2 cut(s) 76, 145
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 2 cut(s) 12, 247
NlaIV GGNNCC 1 cut(s) 172
PasI CCCWGGG 1 cut(s) 144
Ple19I CGATCG 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 74, 143
PspGI CCWGG 2 cut(s) 74, 143
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 72
PvuI CGATCG 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 99
Sau3AI GATC 2 cut(s) 12, 247
Sau96I GGNCC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 76, 145
SetI ASST 3 cut(s) 26, 108, 297
SmiMI CAYNNNNRTG 1 cut(s) 99
SsiI CCGC 2 cut(s) 241, 276
SspMI CTAG 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 74, 143
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 98, 287
TspDTI ATGAA 2 cut(s) 17, 54
XspI CTAG 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.