RLG00000013949
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000418
Physical Location & Seq
Forward (+)
44675085 .. 44700626
25542 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013949

Sequence Viewer

Length: 852 bp
ATGGGTTATCCGATGATTCCGATCGGGTACAGGTTTCATCCCACTGATGAAGAACTTGTGGGTTACTTTCTCCAGCAAAGGGCCAGGATGGGCAATCAGTTCCACTCGAATGAGATCTCCGAGTATCCGGAGTTTTACGGCCAAGAAGAACCCTGGGTTGTTTGGGACAAGCACGGTGGTTCCAGCGTGGATGATGGAGAGCCTCTCTTTTTCTTCACCAAACGCAAGAAGTTGAACCCCAACGGCAAGCGTTTTGATCGCAAAGTAGGCTCCGGAACGTGGAGCGGCCAGTTTTCCAGACAGGTTGTTGCCGCCGATAGAGAGACCGGATGCCGTATCATCAATGGGATTAGGAGGGATTTTAGGTATGAGGGCGGATGTGATGCTCAACAAAACAACTCTTGGTTGATGCAAGAGTTCGAATTGTGTCCCACTGATGCCTTGGTCTTGTGCACCTTGAAGAAGAACCCACGAAAAGCTGCTCAGACCAATGGCAAGAAGAGGAAGATGATCAATTCCGAGAGTCGAGATGATCAGTTGTTGCAAGTTGTTAATGAAGAGCTCTATCCTGAGTTATATCTTGATAATGGGCCTCTGTTTTCTATGGAGGAACTTCTTGCACCAAGTCCTCCAAATGTTCCGGATCCTCTTCAACACTTGGAGTCGAATGAGTCTCAGTCTCAGGATCAATCATATGTCAGCACTAATGATCAATTTCAGGATCATTCATATGAAGACAATAGCTTCCTGAGTTTCCTATCCGCTGAATTTCAACAACAGTTAGGCGAAGACAACAACTTCAGCTTTGTATCCACTGATCAATACTTGGACTGCAACGACTTAACATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

284

Amino Acids

32.72

Weight (kDa)

4.7

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 142 2.2e-22 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000418)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g25200 FvH4_5g34450 FvH4_6g05730 FvH4_6g05740 FvH4_7g06570
rosa_chinensis RchiOBHm_Chr1g0333911 RchiOBHm_Chr3g0454621 RchiOBHm_Chr3g0454651 RchiOBHm_Chr5g0045711 RchiOBHm_Chr5g0045741 RchiOBHm_Chr5g0045961 RchiOBHm_Chr5g0048841 RchiOBHm_Chr5g0048911 RchiOBHm_Chr6g0266631 RchiOBHm_Chr6g0266821 RchiOBHm_Chr7g0235081
rosa_laevigata RLG00000001184 RLG00000010084 RLG00000013949 RLG00000013954 RLG00000013958 RLG00000013962 RLG00000013991 RLG00000014031 RLG00000014041 RLG00000014077 RLG00000014088 RLG00000014094 RLG00000025427 RLG00000025429 RLG00000029394 RLG00000029510 RLG00000029526 RLG00000034372 RLG00000034376
rosa_multiflora Rmu_co8426689.1_g000001 Rmu_co8428107.1_g000001 Rmu_sc0000026.1_g000016 Rmu_sc0000115.1_g000020 Rmu_sc0001035.1_g000067 Rmu_sc0001035.1_g000078 Rmu_sc0001208.1_g000032 Rmu_sc0001208.1_g000034 Rmu_sc0001792.1_g000031 Rmu_sc0001792.1_g000034 Rmu_sc0002239.1_g000009 Rmu_sc0002722.1_g000010 Rmu_sc0003628.1_g000026 Rmu_sc0004304.1_g000006 Rmu_sc0006003.1_g000019 Rmu_sc0006413.1_g000005 Rmu_sc0006413.1_g000020 Rmu_sc0007177.1_g000007 Rmu_sc0020815.1_g000004
rosa_roxburghii Rroxscaffold_1G00033010 Rroxscaffold_3G00226320 Rroxscaffold_6G00424890 Rroxscaffold_6G00424920 Rroxscaffold_7G00195150
rosa_rugosa Rorug01G0112100 Rorug01G0112200 Rorug01G0119400 Rorug03G0000700 Rorug03G0000900 Rorug03G0211800 Rorug03G0211900 Rorug03G0212000 Rorug03G0212100 Rorug05G0224400 Rorug05G0232500 Rorug05G0232700 Rorug05G0573400 Rorug06G0025800 Rorug07G0143000 Rorug07G0143100
rosa_samantha Rh1AG136300 Rh1DG141400 Rh1DG146800 Rh3AG060600 Rh3AG060800 Rh6BG147300 Rh6BG148700 Rh6BG149100 Rh6BG160100 Rh6BG161000 Rh7AG442200
rosa_wichuraiana Rw0G021480 Rw1G011300 Rw3G004710 Rw3G004730 Rw3G025710 Rw5G028590 Rw5G028720 Rw5G028760 Rw5G030090 Rw5G030310 Rw5G030530 Rw7G036760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 285
AccIII TCCGGA 3 cut(s) 127, 272, 640
AciI CCGC 4 cut(s) 285, 312, 375, 762
AclWI GGATC 4 cut(s) 638, 651, 693, 729
AcoI YGGCCR 2 cut(s) 139, 286
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 784
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 79, 279
AgsI TTSAA 4 cut(s) 235, 460, 653, 773
AjnI CCWGG 2 cut(s) 83, 152
AluBI AGCT 4 cut(s) 479, 562, 744, 804
AluI AGCT 4 cut(s) 479, 562, 744, 804
Alw21I GWGCWC 2 cut(s) 455, 564
Alw26I GTCTC 3 cut(s) 317, 678, 684
Alw44I GTGCAC 1 cut(s) 451
AlwI GGATC 4 cut(s) 638, 651, 693, 729
Aor13HI TCCGGA 3 cut(s) 127, 272, 640
AoxI GGCC 4 cut(s) 81, 139, 286, 590
ApaLI GTGCAC 1 cut(s) 451
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 767
AspS9I GGNCC 2 cut(s) 81, 590
AsuHPI GGTGA 1 cut(s) 208
AsuII TTCGAA 1 cut(s) 420
BaeGI GKGCMC 1 cut(s) 455
BamHI GGATCC 1 cut(s) 643
BanII GRGCYC 1 cut(s) 564
BbsI GAAGAC 2 cut(s) 741, 795
Bbv12I GWGCWC 2 cut(s) 455, 564
BbvI GCAGC 1 cut(s) 466
BccI CCATC 2 cut(s) 82, 188
BceAI ACGGC 3 cut(s) 154, 259, 318
BciT130I CCWGG 2 cut(s) 85, 154
BciVI GTATCC 2 cut(s) 135, 820
BclI TGATCA 4 cut(s) 510, 532, 709, 817
BcoDI GTCTC 3 cut(s) 317, 678, 684
BfuI GTATCC 2 cut(s) 135, 820
BglII AGATCT 1 cut(s) 114
BisI GCNGC 3 cut(s) 286, 312, 480
BlsI GCNGC 3 cut(s) 287, 313, 481
Bme1390I CCNGG 2 cut(s) 85, 154
BmgT120I GGNCC 2 cut(s) 81, 590
BmiI GGNNCC 3 cut(s) 181, 271, 645
BmrFI CCNGG 2 cut(s) 85, 154
BmsI GCATC 4 cut(s) 320, 373, 399, 427
BpiI GAAGAC 2 cut(s) 741, 795
BplI GAGNNNNNCTC 2 cut(s) 189, 221
BpmI CTGGAG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 152, 153, 441
BsaWI WCCGGW 4 cut(s) 127, 272, 326, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 279
Bse1I ACTGG 1 cut(s) 289
Bse8I GATNNNNATC 1 cut(s) 20
BseAI TCCGGA 3 cut(s) 127, 272, 640
BseBI CCWGG 2 cut(s) 85, 154
BseDI CCNNGG 3 cut(s) 152, 153, 441
BseGI GGATG 5 cut(s) 37, 93, 196, 335, 383
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 79, 279
BseMII CTCAG 5 cut(s) 497, 561, 689, 695, 740
BseNI ACTGG 1 cut(s) 289
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 1 cut(s) 466
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 4 cut(s) 83, 141, 288, 592
BsiEI CGRYCG 1 cut(s) 24
BsiHKAI GWGCWC 2 cut(s) 455, 564
BsiSI CCGG 4 cut(s) 128, 273, 327, 641
BslFI GGGAC 2 cut(s) 179, 414
BslI CCNNNNNNNGG 2 cut(s) 79, 279
BsmAI GTCTC 3 cut(s) 317, 678, 684
BsmFI GGGAC 2 cut(s) 179, 414
BsnI GGCC 4 cut(s) 83, 141, 288, 592
Bso31I GGTCTC 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 420
Bsp1286I GDGCHC 2 cut(s) 455, 564
Bsp13I TCCGGA 3 cut(s) 127, 272, 640
BspACI CCGC 4 cut(s) 285, 312, 375, 762
BspANI GGCC 4 cut(s) 83, 141, 288, 592
BspCNI CTCAG 5 cut(s) 496, 562, 688, 694, 741
BspEI TCCGGA 3 cut(s) 127, 272, 640
BspLI GGNNCC 3 cut(s) 181, 271, 645
BspPI GGATC 4 cut(s) 638, 651, 693, 729
BspQI GCTCTTC 1 cut(s) 552
BspT104I TTCGAA 1 cut(s) 420
BspTNI GGTCTC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 285
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 3 cut(s) 152, 153, 441
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 85, 154
Bst4CI ACNGT 2 cut(s) 176, 780
Bst6I CTCTTC 3 cut(s) 494, 552, 654
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 5 cut(s) 483, 570, 675, 681, 749
BstF5I GGATG 5 cut(s) 37, 93, 196, 335, 383
BstMAI GTCTC 3 cut(s) 317, 678, 684
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 2 cut(s) 85, 154
BstSCI CCNGG 2 cut(s) 83, 152
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 1 cut(s) 466
BstV2I GAAGAC 2 cut(s) 741, 795
BstX2I RGATCY 2 cut(s) 114, 643
BstYI RGATCY 2 cut(s) 114, 643
BsuI GTATCC 2 cut(s) 135, 820
BsuRI GGCC 4 cut(s) 83, 141, 288, 592
BtsCI GGATG 5 cut(s) 37, 93, 196, 335, 383
BtsIMutI CAGTG 3 cut(s) 42, 432, 813
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 81, 590
Csp6I GTAC 1 cut(s) 28
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 1 cut(s) 846
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 5 cut(s) 483, 570, 675, 681, 749
EaeI YGGCCR 2 cut(s) 139, 286
Eam1104I CTCTTC 3 cut(s) 494, 552, 654
EarI CTCTTC 3 cut(s) 494, 552, 654
EciI GGCGGA 1 cut(s) 390
Ecl136II GAGCTC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 564
Eco31I GGTCTC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 784
EcoICRI GAGCTC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 83, 152
EcoT14I CCWWGG 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 1 cut(s) 849
FaiI YATR 8 cut(s) 369, 577, 605, 694, 696, 730, 732, 847
FaqI GGGAC 2 cut(s) 179, 414
FatI CATG 1 cut(s) 845
FauNDI CATATG 2 cut(s) 694, 730
FbaI TGATCA 4 cut(s) 510, 532, 709, 817
Fnu4HI GCNGC 3 cut(s) 286, 312, 480
FokI GGATG 5 cut(s) 24, 100, 203, 342, 390
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 3 cut(s) 286, 312, 480
GluI GCNGC 3 cut(s) 286, 312, 480
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 4 cut(s) 83, 141, 288, 592
HapII CCGG 4 cut(s) 128, 273, 327, 641
Hin1II CATG 1 cut(s) 849
HinfI GANTC 4 cut(s) 16, 523, 662, 671
HpaII CCGG 4 cut(s) 128, 273, 327, 641
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 5 cut(s) 12, 21, 121, 486, 520
Hpy8I GTNNAC 1 cut(s) 453
HpyCH4III ACNGT 2 cut(s) 176, 780
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 5 cut(s) 412, 453, 544, 620, 834
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 5 cut(s) 483, 570, 675, 681, 749
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 1 cut(s) 849
Kpn2I TCCGGA 3 cut(s) 127, 272, 640
Ksp22I TGATCA 4 cut(s) 510, 532, 709, 817
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 2 cut(s) 275, 282
Lsp1109I GCAGC 1 cut(s) 466
LweI GCATC 4 cut(s) 320, 373, 399, 427
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 1 cut(s) 62
MbiI CCGCTC 1 cut(s) 285
MflI RGATCY 2 cut(s) 114, 643
MhlI GDGCHC 2 cut(s) 455, 564
MluCI AATT 4 cut(s) 422, 514, 713, 767
MlyI GAGTC 3 cut(s) 532, 671, 680
MnlI CCTC 8 cut(s) 213, 348, 364, 495, 601, 603, 639, 657
MroI TCCGGA 3 cut(s) 127, 272, 640
MseI TTAA 2 cut(s) 552, 842
MslI CAYNNNNRTG 2 cut(s) 108, 729
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 4 cut(s) 128, 273, 327, 641
MspR9I CCNGG 2 cut(s) 85, 154
MvaI CCWGG 2 cut(s) 85, 154
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeI CATATG 2 cut(s) 694, 730
NlaIII CATG 1 cut(s) 849
NlaIV GGNNCC 3 cut(s) 181, 271, 645
NspV TTCGAA 1 cut(s) 420
PasI CCCWGGG 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 3 cut(s) 287, 313, 481
Ple19I CGATCG 1 cut(s) 24
PleI GAGTC 3 cut(s) 531, 670, 679
PpsI GAGTC 3 cut(s) 531, 670, 679
Psp124BI GAGCTC 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 83, 152
PspGI CCWGG 2 cut(s) 83, 152
PspN4I GGNNCC 3 cut(s) 181, 271, 645
PspPI GGNCC 2 cut(s) 81, 590
PsuI RGATCY 2 cut(s) 114, 643
PvuI CGATCG 1 cut(s) 24
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 108, 729
SacI GAGCTC 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 2 cut(s) 552, 842
SatI GCNGC 3 cut(s) 286, 312, 480
Sau96I GGNCC 2 cut(s) 81, 590
SchI GAGTC 3 cut(s) 532, 671, 680
ScrFI CCNGG 2 cut(s) 85, 154
SduI GDGCHC 2 cut(s) 455, 564
SetI ASST 9 cut(s) 35, 281, 306, 368, 458, 481, 564, 746, 806
SfaNI GCATC 4 cut(s) 320, 373, 399, 427
SfuI TTCGAA 1 cut(s) 420
SmiMI CAYNNNNRTG 2 cut(s) 108, 729
Sse9I AATT 4 cut(s) 422, 514, 713, 767
SsiI CCGC 4 cut(s) 285, 312, 375, 762
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 83, 152
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 2 cut(s) 176, 780
TaiI ACGT 1 cut(s) 281
TaqI TCGA 4 cut(s) 107, 420, 526, 665
TasI AATT 4 cut(s) 422, 514, 713, 767
TauI GCSGC 2 cut(s) 288, 314
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 2 cut(s) 552, 842
Tru9I TTAA 2 cut(s) 552, 842
TscAI CASTG 3 cut(s) 49, 439, 820
TseI GCWGC 1 cut(s) 479
TspDTI ATGAA 5 cut(s) 26, 63, 570, 717, 747
TspRI CASTG 3 cut(s) 49, 439, 820
VneI GTGCAC 1 cut(s) 451
XapI RAATTY 1 cut(s) 767
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.